Wall clock time and date at job start Wed Apr 1 2020 05:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34259 * 125.75462 * 2 1 4 4 C 1.38043 * 107.41843 * 180.02562 * 3 2 1 5 5 C 1.47432 * 126.41404 * 179.97438 * 4 3 2 6 6 O 1.21599 * 119.99785 * 174.10566 * 5 4 3 7 7 N 1.34772 * 119.99954 * 354.11490 * 5 4 3 8 8 C 1.47895 * 134.34102 * 179.97438 * 7 5 4 9 9 C 1.52376 * 85.73074 * 156.53498 * 8 7 5 10 10 C 1.48162 * 134.44871 * 359.87241 * 7 5 4 11 11 C 1.53652 * 116.39605 * 141.28648 * 9 8 7 12 12 C 1.54598 * 102.73579 * 162.91451 * 11 9 8 13 13 N 1.47140 * 107.36533 * 339.24640 * 12 11 9 14 14 C 1.36929 * 125.58852 * 179.07251 * 13 12 11 15 15 H 1.08005 * 120.00066 * 180.02562 * 14 13 12 16 16 C 1.38817 * 119.99938 * 0.02707 * 14 13 12 17 17 N 1.31612 * 119.99900 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99855 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47007 * 89.99748 * 18 16 14 20 20 H 1.48500 * 109.46928 * 210.00073 * 18 16 14 21 21 H 1.48506 * 109.46958 * 329.99849 * 18 16 14 22 22 C 1.47725 * 108.82059 * 359.07537 * 13 12 11 23 23 C 1.41289 * 107.16955 * 0.22927 * 4 3 2 24 24 C 1.50703 * 125.98745 * 179.74008 * 23 4 3 25 25 C 1.52997 * 109.47100 * 62.30907 * 24 23 4 26 26 C 1.52999 * 109.46913 * 182.31164 * 24 23 4 27 27 C 1.53006 * 109.46915 * 302.31003 * 24 23 4 28 28 N 1.30445 * 108.02266 * 359.61179 * 23 4 3 29 29 H 1.08993 * 109.46950 * 90.00011 * 1 2 3 30 30 H 1.09003 * 109.46385 * 209.99848 * 1 2 3 31 31 H 1.09001 * 109.47116 * 329.99699 * 1 2 3 32 32 H 1.08002 * 126.28913 * 0.02562 * 3 2 1 33 33 H 1.08998 * 113.85349 * 42.30962 * 8 7 5 34 34 H 1.08995 * 113.85224 * 270.76696 * 8 7 5 35 35 H 1.08994 * 113.74000 * 89.29798 * 10 7 5 36 36 H 1.09000 * 114.04438 * 317.67163 * 10 7 5 37 37 H 1.09002 * 110.75762 * 281.22694 * 11 9 8 38 38 H 1.09003 * 110.76223 * 44.60069 * 11 9 8 39 39 H 1.09001 * 109.86810 * 98.69289 * 12 11 9 40 40 H 1.08997 * 109.86828 * 219.79854 * 12 11 9 41 41 H 0.97008 * 119.99658 * 180.02562 * 17 16 14 42 42 H 1.08996 * 110.40046 * 263.65498 * 22 13 12 43 43 H 1.09006 * 110.39864 * 141.24866 * 22 13 12 44 44 H 1.08999 * 109.47215 * 68.28947 * 25 24 23 45 45 H 1.08996 * 109.47075 * 188.28664 * 25 24 23 46 46 H 1.08996 * 109.47286 * 308.28618 * 25 24 23 47 47 H 1.08997 * 109.47599 * 59.99952 * 26 24 23 48 48 H 1.09005 * 109.46623 * 179.97438 * 26 24 23 49 49 H 1.08995 * 109.47118 * 299.99710 * 26 24 23 50 50 H 1.08995 * 109.47272 * 51.77027 * 27 24 23 51 51 H 1.08999 * 109.46832 * 171.76611 * 27 24 23 52 52 H 1.09001 * 109.46879 * 291.76543 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5599 0.6553 -0.0006 5 6 4.7639 1.5062 -0.0013 6 8 5.8650 1.0016 0.1063 7 7 4.6440 2.8432 -0.1212 8 6 5.6038 3.9678 -0.1589 9 6 4.5087 4.7285 -0.8964 10 6 3.5002 3.7732 -0.2694 11 6 4.3523 6.2153 -0.5419 12 6 3.5225 6.7626 -1.7260 13 7 3.6843 5.8232 -2.8469 14 6 3.0932 5.9403 -4.0765 15 1 3.2752 5.1947 -4.8364 16 6 2.2601 7.0174 -4.3462 17 7 2.0380 7.9257 -3.4201 18 14 1.4531 7.1768 -6.0234 19 1 0.1398 6.4836 -6.0088 20 1 1.2511 8.6133 -6.3410 21 1 2.3269 6.5602 -7.0538 22 6 4.5890 4.7329 -2.4282 23 6 3.5311 -0.7573 -0.0063 24 6 4.7322 -1.6675 -0.0145 25 6 5.5482 -1.4465 1.2607 26 6 4.2679 -3.1240 -0.0770 27 6 5.5999 -1.3559 -1.2356 28 7 2.2827 -1.1356 -0.0006 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3632 -0.8901 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.9166 2.1170 0.0004 33 1 6.4887 3.7719 -0.7644 34 1 5.8410 4.3779 0.8227 35 1 3.0930 4.1227 0.6793 36 1 2.7326 3.4263 -0.9612 37 1 3.8109 6.3339 0.3967 38 1 5.3248 6.7052 -0.4927 39 1 2.4715 6.8254 -1.4441 40 1 3.8906 7.7478 -2.0123 41 1 1.4555 8.6782 -3.6085 42 1 5.6083 4.9386 -2.7547 43 1 4.2458 3.7793 -2.8295 44 1 4.9833 -1.8068 2.1205 45 1 6.4888 -1.9926 1.1894 46 1 5.7538 -0.3829 1.3808 47 1 3.6866 -3.2814 -0.9855 48 1 5.1368 -3.7822 -0.0834 49 1 3.6498 -3.3459 0.7928 50 1 5.8095 -0.2868 -1.2691 51 1 6.5372 -1.9078 -1.1656 52 1 5.0712 -1.6511 -2.1419 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073062809.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:03 Heat of formation + Delta-G solvation = 91.874716 kcal Electronic energy + Delta-G solvation = -31961.425868 eV Core-core repulsion = 27964.281737 eV Total energy + Delta-G solvation = -3997.144131 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.63861 -41.47620 -39.35696 -37.79690 -36.98472 -34.11140 -33.64727 -32.03518 -31.07114 -29.66465 -28.13378 -28.07132 -27.89890 -27.37754 -27.15235 -25.41435 -23.37402 -22.57442 -22.05521 -20.67035 -19.80805 -19.18253 -18.74603 -18.18507 -17.31133 -16.81014 -16.78464 -16.46038 -16.27457 -15.90343 -15.83621 -15.55991 -15.24526 -15.07782 -14.79003 -14.33602 -14.14284 -13.83765 -13.77107 -13.62332 -13.46418 -13.35248 -13.19622 -13.00706 -12.88603 -12.82306 -12.76232 -12.44677 -12.30463 -12.27571 -12.01534 -11.99841 -11.89084 -11.84544 -11.64632 -11.61081 -11.35898 -11.21334 -10.66033 -10.48587 -10.38508 -9.76696 -9.43537 -8.84695 -7.82099 -5.16122 0.51133 1.12250 1.42410 1.47039 1.48158 1.56571 1.91134 2.45338 2.50640 3.25658 3.31999 3.44206 3.58167 3.66136 3.72890 3.85407 3.93840 4.09944 4.12840 4.20330 4.24997 4.32566 4.38937 4.45425 4.55005 4.56468 4.63381 4.66601 4.68327 4.79922 4.81733 4.83607 4.85098 4.95840 4.98563 5.01448 5.02499 5.10348 5.13308 5.16030 5.17570 5.23553 5.28507 5.48998 5.49822 5.54816 5.64001 5.77508 5.86142 5.87973 6.24537 6.55882 6.80458 7.15615 7.32372 7.81581 8.45286 9.27362 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012977 B = 0.003062 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.179104 B = 9141.076652 C = 9959.701387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.362 5.362 3 C 0.108 3.892 4 C -0.308 4.308 5 C 0.607 3.393 6 O -0.557 6.557 7 N -0.640 5.640 8 C 0.134 3.866 9 C -0.096 4.096 10 C 0.121 3.879 11 C -0.112 4.112 12 C 0.185 3.815 13 N -0.624 5.624 14 C -0.240 4.240 15 H 0.074 0.926 16 C -0.058 4.058 17 N -0.945 5.945 18 Si 0.970 3.030 19 H -0.285 1.285 20 H -0.294 1.294 21 H -0.275 1.275 22 C 0.160 3.840 23 C 0.130 3.870 24 C 0.016 3.984 25 C -0.139 4.139 26 C -0.128 4.128 27 C -0.143 4.143 28 N -0.319 5.319 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.119 0.881 32 H 0.206 0.794 33 H 0.076 0.924 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.019 0.981 40 H 0.003 0.997 41 H 0.247 0.753 42 H 0.021 0.979 43 H 0.029 0.971 44 H 0.046 0.954 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.048 0.952 48 H 0.074 0.926 49 H 0.054 0.946 50 H 0.067 0.933 51 H 0.070 0.930 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.049 -15.071 12.676 19.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.139 5.139 3 C -0.045 4.045 4 C -0.322 4.322 5 C 0.400 3.600 6 O -0.439 6.439 7 N -0.374 5.374 8 C 0.012 3.988 9 C -0.098 4.098 10 C -0.001 4.001 11 C -0.151 4.151 12 C 0.060 3.940 13 N -0.350 5.350 14 C -0.369 4.369 15 H 0.091 0.909 16 C -0.252 4.252 17 N -0.594 5.594 18 Si 0.799 3.201 19 H -0.212 1.212 20 H -0.221 1.221 21 H -0.201 1.201 22 C 0.035 3.965 23 C -0.037 4.037 24 C 0.014 3.986 25 C -0.197 4.197 26 C -0.185 4.185 27 C -0.201 4.201 28 N -0.140 5.140 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.138 0.862 32 H 0.223 0.777 33 H 0.095 0.905 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.095 0.905 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.037 0.963 40 H 0.021 0.979 41 H 0.056 0.944 42 H 0.039 0.961 43 H 0.047 0.953 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.067 0.933 48 H 0.092 0.908 49 H 0.073 0.927 50 H 0.086 0.914 51 H 0.089 0.911 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.617 -16.427 12.637 20.735 hybrid contribution -0.235 1.239 -1.369 1.862 sum -0.852 -15.188 11.268 18.931 Atomic orbital electron populations 1.22388 0.71042 1.06725 1.05138 1.48714 1.08461 1.03190 1.53520 1.23740 0.90081 0.94855 0.95830 1.20238 0.93119 0.93788 1.25088 1.17002 0.87757 0.79969 0.75272 1.90595 1.28310 1.72397 1.52582 1.50065 1.11634 1.03433 1.72279 1.23001 0.93436 0.81519 1.00833 1.22246 0.97008 0.95366 0.95164 1.23289 0.90604 0.85283 1.00906 1.22525 1.00980 0.92884 0.98666 1.21004 0.96391 0.91107 0.85508 1.44827 1.53724 1.25228 1.11252 1.19341 1.21262 1.06474 0.89851 0.90861 1.25490 1.01254 0.97252 1.01198 1.70155 1.41667 1.13932 1.33653 0.85208 0.78508 0.76441 0.79947 1.21156 1.22093 1.20068 1.21106 0.92889 0.90617 0.91862 1.22629 0.93361 0.92490 0.95261 1.19025 0.89116 0.92807 0.97651 1.21988 0.98970 1.04193 0.94535 1.21747 1.01285 0.93761 1.01715 1.22019 0.98929 1.03896 0.95220 1.77084 1.01397 1.08409 1.27105 0.89372 0.88047 0.86241 0.77709 0.90543 0.86784 0.86265 0.90457 0.88466 0.90330 0.96307 0.97856 0.94402 0.96090 0.95263 0.93488 0.91344 0.90915 0.93267 0.90754 0.92666 0.91400 0.91126 0.94063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.03 11.44 127.77 1.46 2.50 16 2 N -0.36 -7.96 3.98 -367.77 -1.46 -9.42 16 3 C 0.11 2.47 10.52 84.28 0.89 3.35 16 4 C -0.31 -8.69 5.89 -20.15 -0.12 -8.81 16 5 C 0.61 18.34 7.43 86.67 0.64 18.99 16 6 O -0.56 -18.81 11.14 -4.03 -0.04 -18.86 16 7 N -0.64 -17.02 3.63 -862.94 -3.13 -20.15 16 8 C 0.13 3.26 8.20 85.90 0.70 3.97 16 9 C -0.10 -2.75 0.99 -52.16 -0.05 -2.80 16 10 C 0.12 2.91 6.22 85.86 0.53 3.44 16 11 C -0.11 -3.34 6.36 31.36 0.20 -3.14 16 12 C 0.18 8.24 5.39 86.80 0.47 8.71 16 13 N -0.62 -30.18 3.41 -693.35 -2.36 -32.54 16 14 C -0.24 -13.06 10.28 84.04 0.86 -12.19 16 15 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 16 C -0.06 -3.22 5.49 84.86 0.47 -2.75 16 17 N -0.95 -54.28 10.30 21.65 0.22 -54.06 16 18 Si 0.97 44.63 29.55 68.60 2.03 46.66 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 20 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 C 0.16 6.21 6.63 86.28 0.57 6.78 16 23 C 0.13 3.71 5.64 43.52 0.25 3.96 16 24 C 0.02 0.42 0.75 -52.93 -0.04 0.38 16 25 C -0.14 -3.46 8.20 71.98 0.59 -2.87 16 26 C -0.13 -2.78 7.94 71.98 0.57 -2.21 16 27 C -0.14 -3.85 8.19 71.98 0.59 -3.26 16 28 N -0.32 -8.71 11.80 -46.68 -0.55 -9.26 16 29 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.21 3.61 5.37 -2.91 -0.02 3.60 16 33 H 0.08 1.98 8.12 -2.39 -0.02 1.96 16 34 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.12 2.12 8.04 -2.39 -0.02 2.10 16 36 H 0.08 2.01 6.68 -2.39 -0.02 1.99 16 37 H 0.10 2.31 7.99 -2.39 -0.02 2.29 16 38 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.02 0.93 7.39 -2.39 -0.02 0.91 16 40 H 0.00 0.16 7.49 -2.39 -0.02 0.15 16 41 H 0.25 13.84 8.31 -92.70 -0.77 13.07 16 42 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.03 1.18 8.07 -2.38 -0.02 1.16 16 44 H 0.05 1.09 8.13 -2.39 -0.02 1.07 16 45 H 0.07 1.49 8.08 -2.39 -0.02 1.48 16 46 H 0.07 2.15 4.77 -2.39 -0.01 2.14 16 47 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 49 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.07 2.18 4.58 -2.39 -0.01 2.17 16 51 H 0.07 1.65 8.08 -2.39 -0.02 1.63 16 52 H 0.04 1.09 8.13 -2.39 -0.02 1.07 16 Total: -1.00 -72.28 401.03 4.19 -68.09 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.91 Total: 15.50 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 8.59 Total: 14.04 kcal Atomic # 7 Polarization: -118.14 SS G_CDS: -7.29 Total: -125.43 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.04 Total: -18.86 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -72.28 4.19 -68.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073062809.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.965 kcal (2) G-P(sol) polarization free energy of solvation -72.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds