Wall clock time and date at job start Wed Apr 1 2020 04:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47266 * 2 1 4 4 N 1.30498 * 125.65146 * 269.95824 * 3 2 1 5 5 C 1.34128 * 109.25660 * 180.02562 * 4 3 2 6 6 C 1.34669 * 108.02336 * 0.02562 * 5 4 3 7 7 N 1.35044 * 125.65011 * 89.99721 * 3 2 1 8 8 C 1.46503 * 126.39660 * 359.70746 * 7 3 2 9 9 H 1.09004 * 109.47193 * 359.97438 * 8 7 3 10 10 C 1.53000 * 109.47187 * 119.99644 * 8 7 3 11 11 C 1.52997 * 109.46923 * 239.99649 * 8 7 3 12 12 C 1.50708 * 109.46967 * 174.99881 * 11 8 7 13 13 O 1.21273 * 119.99917 * 0.02562 * 12 11 8 14 14 N 1.34776 * 119.99882 * 180.02562 * 12 11 8 15 15 C 1.47404 * 125.59197 * 0.02562 * 14 12 11 16 16 C 1.54848 * 104.81333 * 204.61171 * 15 14 12 17 17 C 1.55129 * 101.77682 * 322.81098 * 16 15 14 18 18 H 1.08996 * 113.45966 * 159.24249 * 17 16 15 19 19 C 1.54039 * 108.25830 * 286.09674 * 17 16 15 20 20 N 1.46698 * 106.83304 * 135.80628 * 19 17 16 21 21 C 1.36939 * 125.32589 * 161.83778 * 20 19 17 22 22 H 1.07993 * 119.99853 * 0.02562 * 21 20 19 23 23 C 1.38818 * 120.00005 * 180.02562 * 21 20 19 24 24 N 1.31623 * 119.99706 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99921 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.46979 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.46684 * 120.00023 * 25 23 21 28 28 H 1.48498 * 109.46621 * 239.99885 * 25 23 21 29 29 C 1.46639 * 109.35404 * 341.81573 * 20 19 17 30 30 C 1.46728 * 125.59051 * 179.71972 * 14 12 11 31 31 H 1.08992 * 111.32955 * 56.12132 * 30 14 12 32 32 H 1.09003 * 109.47396 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47149 * 299.99690 * 1 2 3 34 34 H 1.08994 * 109.47064 * 59.99927 * 1 2 3 35 35 H 1.08993 * 109.47303 * 239.99827 * 2 1 3 36 36 H 1.09011 * 109.47228 * 119.99937 * 2 1 3 37 37 H 1.07999 * 125.98696 * 180.02562 * 5 4 3 38 38 H 1.07996 * 126.59301 * 180.02562 * 6 5 4 39 39 H 1.08994 * 109.47192 * 299.99847 * 10 8 7 40 40 H 1.08996 * 109.46977 * 60.00331 * 10 8 7 41 41 H 1.09005 * 109.46724 * 179.97438 * 10 8 7 42 42 H 1.08994 * 109.47742 * 294.99788 * 11 8 7 43 43 H 1.09004 * 109.47407 * 55.00339 * 11 8 7 44 44 H 1.09004 * 110.36715 * 323.44244 * 15 14 12 45 45 H 1.08997 * 110.37191 * 85.66092 * 15 14 12 46 46 H 1.08994 * 110.97265 * 80.93351 * 16 15 14 47 47 H 1.09001 * 110.96517 * 204.69405 * 16 15 14 48 48 H 1.09008 * 109.98742 * 255.14873 * 19 17 16 49 49 H 1.09003 * 109.99163 * 16.46014 * 19 17 16 50 50 H 0.97004 * 119.99540 * 179.97438 * 24 23 21 51 51 H 1.09000 * 109.75390 * 120.92825 * 29 20 19 52 52 H 1.08994 * 109.75773 * 241.63002 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2866 2.1376 -1.0604 5 6 2.7158 3.3507 -0.6818 6 6 2.7285 3.3868 0.6643 7 7 2.2946 2.1629 1.0974 8 6 2.1384 1.7392 2.4910 9 1 1.7704 0.7135 2.5199 10 6 3.4908 1.8164 3.2023 11 6 1.1388 2.6592 3.1947 12 6 0.8847 2.1510 4.5906 13 8 1.4481 1.1516 4.9839 14 7 0.0315 2.8070 5.4017 15 6 -0.7169 4.0280 5.0524 16 6 -1.0123 4.7131 6.4093 17 6 -1.2871 3.4928 7.3269 18 1 -1.1674 3.7120 8.3879 19 6 -2.6739 2.9243 6.9713 20 7 -2.5330 1.4652 6.9145 21 6 -3.5646 0.5670 6.9790 22 1 -4.5809 0.9182 7.0796 23 6 -3.3041 -0.7950 6.9150 24 7 -2.0655 -1.2230 6.7918 25 14 -4.7114 -2.0203 7.0022 26 1 -5.9966 -1.2890 7.1382 27 1 -4.7345 -2.8366 5.7618 28 1 -4.5216 -2.9093 8.1764 29 6 -1.1147 1.1189 6.7773 30 6 -0.3097 2.4195 6.7752 31 1 0.5816 2.3382 7.3972 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8899 35 1 1.8933 -0.5138 -0.8899 36 1 1.8933 -0.5139 0.8901 37 1 3.0012 4.1571 -1.3410 38 1 3.0234 4.2213 1.2832 39 1 4.2029 1.1610 2.7010 40 1 3.8584 2.8421 3.1735 41 1 3.3743 1.5016 4.2394 42 1 1.5466 3.6687 3.2443 43 1 0.2023 2.6727 2.6370 44 1 -0.1092 4.6785 4.4233 45 1 -1.6466 3.7710 4.5448 46 1 -0.1470 5.2765 6.7584 47 1 -1.8910 5.3542 6.3394 48 1 -3.3973 3.1991 7.7391 49 1 -2.9957 3.3056 6.0022 50 1 -1.8834 -2.1748 6.7475 51 1 -0.8056 0.4932 7.6147 52 1 -0.9545 0.5857 5.8403 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075811870.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:42 Heat of formation + Delta-G solvation = 55.795879 kcal Electronic energy + Delta-G solvation = -32067.214276 eV Core-core repulsion = 28068.505649 eV Total energy + Delta-G solvation = -3998.708627 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -42.25279 -40.36269 -38.32745 -35.58216 -34.87742 -33.84568 -32.32825 -30.97142 -30.89113 -29.19026 -28.65384 -27.85305 -26.29621 -24.75810 -24.01224 -23.33143 -22.46601 -21.19682 -20.62402 -19.76079 -19.27339 -18.51281 -17.62110 -16.89544 -16.41766 -15.87659 -15.64789 -15.34763 -14.92740 -14.67089 -14.43006 -14.21445 -13.88932 -13.78250 -13.60522 -13.50796 -13.23578 -13.17733 -12.84598 -12.69683 -12.34971 -12.28885 -12.01251 -11.85359 -11.67421 -11.60018 -11.58193 -11.34038 -11.17077 -11.09204 -11.06260 -10.79183 -10.53309 -10.30352 -10.19319 -10.03699 -9.91893 -9.74233 -9.69299 -9.46503 -8.62467 -8.39864 -8.28734 -6.84895 -5.71306 -3.07220 1.99460 2.58465 2.82706 3.11529 3.29024 3.38232 3.43435 3.46321 4.32341 4.34327 4.45107 4.49365 4.61197 4.68614 4.71821 4.90056 4.99090 5.03836 5.10434 5.20204 5.23715 5.28845 5.37091 5.42379 5.44365 5.49049 5.51111 5.54653 5.66870 5.67659 5.70378 5.72983 5.80102 5.82804 5.92772 5.94284 6.07355 6.13413 6.16217 6.24721 6.33945 6.39531 6.48137 6.57519 6.73005 6.79330 7.14869 7.49729 7.61023 7.81630 7.87347 8.08684 8.25345 8.40572 9.20431 9.81352 10.44247 11.38601 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010987 B = 0.003398 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.902657 B = 8238.090347 C = 9743.343328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.042 4.042 3 C 0.213 3.787 4 N -0.495 5.495 5 C -0.033 4.033 6 C -0.058 4.058 7 N -0.446 5.446 8 C 0.145 3.855 9 H 0.114 0.886 10 C -0.164 4.164 11 C -0.144 4.144 12 C 0.532 3.468 13 O -0.528 6.528 14 N -0.600 5.600 15 C 0.099 3.901 16 C -0.124 4.124 17 C -0.111 4.111 18 H 0.099 0.901 19 C 0.141 3.859 20 N -0.603 5.603 21 C -0.234 4.234 22 H 0.078 0.922 23 C -0.005 4.005 24 N -0.915 5.915 25 Si 0.910 3.090 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.290 1.290 29 C 0.177 3.823 30 C 0.116 3.884 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.166 0.834 38 H 0.169 0.831 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.083 0.917 48 H 0.035 0.965 49 H 0.018 0.982 50 H 0.252 0.748 51 H 0.053 0.947 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.123 12.652 -8.085 17.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.081 4.081 3 C -0.049 4.049 4 N -0.214 5.214 5 C -0.181 4.181 6 C -0.191 4.191 7 N -0.129 5.129 8 C 0.042 3.958 9 H 0.131 0.869 10 C -0.221 4.221 11 C -0.185 4.185 12 C 0.320 3.680 13 O -0.405 6.405 14 N -0.334 5.334 15 C -0.024 4.024 16 C -0.162 4.162 17 C -0.130 4.130 18 H 0.117 0.883 19 C 0.015 3.985 20 N -0.329 5.329 21 C -0.362 4.362 22 H 0.096 0.904 23 C -0.202 4.202 24 N -0.562 5.562 25 Si 0.741 3.259 26 H -0.205 1.205 27 H -0.217 1.217 28 H -0.217 1.217 29 C 0.051 3.949 30 C 0.012 3.988 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.184 0.816 38 H 0.186 0.814 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.118 0.882 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.101 0.899 48 H 0.053 0.947 49 H 0.035 0.965 50 H 0.063 0.937 51 H 0.071 0.929 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.354 11.531 -8.594 17.156 hybrid contribution -0.680 -0.110 0.840 1.087 sum 8.674 11.421 -7.754 16.304 Atomic orbital electron populations 1.21740 0.93661 1.02659 1.02488 1.20008 0.96697 0.87379 1.04004 1.23301 1.03622 0.96685 0.81312 1.70233 1.18550 1.04272 1.28300 1.22225 1.06832 0.96291 0.92716 1.22569 1.09749 0.90124 0.96666 1.45647 1.48261 1.11747 1.07221 1.21204 0.97198 1.00133 0.77238 0.86854 1.22268 0.94370 1.02228 1.03243 1.21935 1.01193 1.00715 0.94630 1.19652 0.78950 0.83554 0.85881 1.90726 1.49500 1.24554 1.75686 1.48375 1.42846 1.27257 1.14897 1.22340 0.96458 0.85850 0.97727 1.22746 1.01867 0.97182 0.94407 1.23158 0.97005 0.93658 0.99221 0.88323 1.21306 0.93239 0.86380 0.97560 1.44236 1.03022 0.99183 1.86487 1.19052 0.86786 0.86383 1.43983 0.90413 1.24831 0.96559 0.96884 1.01945 1.70001 1.16779 1.13417 1.55997 0.86077 0.81128 0.81438 0.77299 1.20519 1.21744 1.21698 1.21124 0.82065 0.89671 1.02020 1.22523 0.97502 0.97595 0.81131 0.90368 0.91379 0.92631 0.92001 0.88823 0.90218 0.81644 0.81364 0.92021 0.92468 0.88160 0.88615 0.88445 0.91322 0.90987 0.91031 0.89882 0.94722 0.96482 0.93714 0.92942 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.89 37.15 0.37 -1.29 16 2 C -0.04 -0.47 6.07 -27.89 -0.17 -0.64 16 3 C 0.21 2.80 7.16 -155.42 -1.11 1.69 16 4 N -0.49 -7.07 11.25 -10.82 -0.12 -7.19 16 5 C -0.03 -0.39 11.87 -17.81 -0.21 -0.60 16 6 C -0.06 -0.62 10.70 -16.56 -0.18 -0.80 16 7 N -0.45 -5.31 2.61 -106.83 -0.28 -5.59 16 8 C 0.15 1.73 2.64 -67.93 -0.18 1.55 16 9 H 0.11 1.52 6.49 -51.93 -0.34 1.18 16 10 C -0.16 -1.83 9.00 37.16 0.33 -1.50 16 11 C -0.14 -1.70 4.17 -27.88 -0.12 -1.82 16 12 C 0.53 8.50 7.12 -10.98 -0.08 8.42 16 13 O -0.53 -10.26 13.84 5.56 0.08 -10.18 16 14 N -0.60 -9.51 2.99 -162.72 -0.49 -10.00 16 15 C 0.10 1.22 6.22 -2.57 -0.02 1.20 16 16 C -0.12 -1.39 6.35 -24.63 -0.16 -1.55 16 17 C -0.11 -1.70 4.35 -87.73 -0.38 -2.09 16 18 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 19 C 0.14 2.72 6.44 -3.39 -0.02 2.69 16 20 N -0.60 -15.00 3.38 -172.35 -0.58 -15.58 16 21 C -0.23 -6.44 10.25 -15.06 -0.15 -6.60 16 22 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 23 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 24 N -0.92 -27.14 10.24 55.49 0.57 -26.57 16 25 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 C 0.18 4.29 4.91 -3.99 -0.02 4.27 16 30 C 0.12 2.12 3.55 -66.61 -0.24 1.88 16 31 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.85 7.09 -51.92 -0.37 0.48 16 37 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.17 1.32 8.06 -52.49 -0.42 0.89 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.55 7.96 -51.93 -0.41 0.14 16 41 H 0.10 1.32 5.95 -51.93 -0.31 1.01 16 42 H 0.10 0.90 7.78 -51.93 -0.40 0.50 16 43 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.07 0.64 7.45 -51.93 -0.39 0.25 16 45 H 0.07 0.97 7.19 -51.93 -0.37 0.60 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 48 H 0.03 0.65 8.14 -51.92 -0.42 0.23 16 49 H 0.02 0.33 6.53 -51.93 -0.34 -0.01 16 50 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 51 H 0.05 1.45 7.33 -51.93 -0.38 1.07 16 52 H 0.05 1.51 6.66 -51.93 -0.35 1.16 16 LS Contribution 403.53 15.07 6.08 6.08 Total: -1.00 -33.82 403.53 -10.89 -44.71 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -8.70 Total: 2.69 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -2.42 Total: 4.58 kcal Atomic # 7 Polarization: -64.04 SS G_CDS: -0.90 Total: -64.94 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.08 Total: -10.18 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.82 -10.89 -44.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075811870.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.505 kcal (2) G-P(sol) polarization free energy of solvation -33.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds