Wall clock time and date at job start Wed Apr 1 2020 05:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46883 * 2 1 4 4 C 1.50697 * 109.47086 * 120.00168 * 2 1 3 5 5 N 1.30503 * 125.65263 * 300.03877 * 4 2 1 6 6 C 1.34121 * 109.25851 * 179.97438 * 5 4 2 7 7 C 1.34674 * 108.02191 * 359.73624 * 6 5 4 8 8 N 1.35048 * 125.64756 * 120.00541 * 4 2 1 9 9 C 1.46498 * 126.39884 * 0.03127 * 8 4 2 10 10 C 1.53001 * 109.46952 * 85.00408 * 9 8 4 11 11 C 1.50701 * 109.47100 * 180.02562 * 10 9 8 12 12 O 1.21290 * 119.99650 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00312 * 180.02562 * 11 10 9 14 14 C 1.47399 * 125.58896 * 0.02562 * 13 11 10 15 15 C 1.54857 * 104.81277 * 204.60973 * 14 13 11 16 16 C 1.55120 * 101.77763 * 322.81553 * 15 14 13 17 17 H 1.08994 * 113.46269 * 159.24100 * 16 15 14 18 18 C 1.54044 * 108.25822 * 286.09348 * 16 15 14 19 19 N 1.46700 * 106.83082 * 135.80973 * 18 16 15 20 20 C 1.36942 * 125.32308 * 161.80121 * 19 18 16 21 21 H 1.07997 * 119.99724 * 359.97438 * 20 19 18 22 22 C 1.38816 * 119.99846 * 179.97438 * 20 19 18 23 23 N 1.31617 * 120.00061 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99746 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47573 * 89.99822 * 24 22 20 26 26 H 1.48505 * 109.46896 * 209.99695 * 24 22 20 27 27 H 1.48502 * 109.47305 * 329.99185 * 24 22 20 28 28 C 1.46632 * 109.35438 * 341.81226 * 19 18 16 29 29 C 1.46728 * 125.59242 * 180.02562 * 13 11 10 30 30 H 1.09005 * 111.83795 * 55.80975 * 29 13 11 31 31 H 1.08998 * 109.47042 * 299.99316 * 1 2 3 32 32 H 1.09001 * 109.47050 * 60.00188 * 1 2 3 33 33 H 1.09005 * 109.46533 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47390 * 240.00319 * 2 1 3 35 35 H 1.08995 * 109.46999 * 300.00171 * 3 2 1 36 36 H 1.09002 * 109.46847 * 59.99986 * 3 2 1 37 37 H 1.08999 * 109.47004 * 180.02562 * 3 2 1 38 38 H 1.08001 * 125.99148 * 180.02562 * 6 5 4 39 39 H 1.08000 * 126.59666 * 180.28151 * 7 6 5 40 40 H 1.09003 * 109.47085 * 325.00400 * 9 8 4 41 41 H 1.08998 * 109.47111 * 205.00419 * 9 8 4 42 42 H 1.08996 * 109.47200 * 59.99680 * 10 9 8 43 43 H 1.09006 * 109.46914 * 299.99841 * 10 9 8 44 44 H 1.08997 * 110.37063 * 85.77301 * 14 13 11 45 45 H 1.09004 * 110.36669 * 323.44241 * 14 13 11 46 46 H 1.08998 * 110.96734 * 80.94083 * 15 14 13 47 47 H 1.09004 * 110.96567 * 204.65615 * 15 14 13 48 48 H 1.09007 * 109.98405 * 255.15083 * 18 16 15 49 49 H 1.09000 * 109.98835 * 16.45722 * 18 16 15 50 50 H 0.96996 * 120.00231 * 180.02562 * 23 22 20 51 51 H 1.08997 * 109.75755 * 120.93336 * 28 19 18 52 52 H 1.09002 * 109.76043 * 241.63440 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7854 -0.3625 2.4637 6 6 2.3925 -1.2216 3.2957 7 6 3.0355 -2.1402 2.5497 8 7 2.8121 -1.8130 1.2394 9 6 3.3192 -2.5288 0.0661 10 6 4.6109 -1.8660 -0.4167 11 6 5.1322 -2.6018 -1.6241 12 8 4.5301 -3.5622 -2.0556 13 7 6.2680 -2.1935 -2.2237 14 6 7.0957 -1.0483 -1.8040 15 6 7.8505 -0.6148 -3.0849 16 6 8.1437 -1.9816 -3.7574 17 1 8.3466 -1.9050 -4.8255 18 6 9.2696 -2.6761 -2.9681 19 7 8.8710 -4.0784 -2.8045 20 6 9.7138 -5.1088 -2.4832 21 1 10.7656 -4.9181 -2.3292 22 6 9.2161 -6.3984 -2.3553 23 7 7.9342 -6.6307 -2.5424 24 14 10.3659 -7.8040 -1.9177 25 1 10.4309 -7.9492 -0.4413 26 1 9.8576 -9.0641 -2.5170 27 1 11.7232 -7.5165 -2.4472 28 6 7.4290 -4.2043 -3.0390 29 6 6.8834 -2.8159 -3.4013 30 1 6.1904 -2.8684 -4.2410 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0278 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.6766 1.9563 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.1300 1.4426 -0.0005 38 1 2.3661 -1.1861 4.3748 39 1 3.6174 -2.9735 2.9150 40 1 2.5746 -2.4959 -0.7294 41 1 3.5207 -3.5663 0.3324 42 1 5.3554 -1.8988 0.3787 43 1 4.4093 -0.8284 -0.6831 44 1 7.8022 -1.3534 -1.0322 45 1 6.4646 -0.2364 -1.4424 46 1 7.2172 0.0045 -3.7200 47 1 8.7759 -0.0957 -2.8354 48 1 10.2054 -2.6172 -3.5241 49 1 9.3855 -2.2053 -1.9919 50 1 7.5864 -7.5317 -2.4527 51 1 7.2485 -4.8971 -3.8609 52 1 6.9392 -4.5684 -2.1359 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076322942.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:46 Heat of formation + Delta-G solvation = 52.236983 kcal Electronic energy + Delta-G solvation = -31550.787492 eV Core-core repulsion = 27551.924540 eV Total energy + Delta-G solvation = -3998.862952 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.25367 -40.30528 -38.12837 -35.54996 -34.86777 -34.83085 -32.31685 -30.94547 -30.62380 -28.93492 -28.66230 -27.36876 -26.50474 -24.89489 -24.56922 -22.97173 -22.42285 -21.29505 -20.71762 -19.72354 -19.14842 -18.61472 -17.61021 -16.90704 -16.58824 -15.91341 -15.70653 -15.40046 -14.97605 -14.67068 -14.45699 -14.37523 -13.88769 -13.78773 -13.54379 -13.47716 -13.32224 -13.12994 -12.82492 -12.69277 -12.44359 -12.27480 -12.17533 -11.96267 -11.72518 -11.62912 -11.51317 -11.42069 -11.17205 -11.12888 -11.05297 -10.78446 -10.53322 -10.30675 -10.20797 -10.01797 -9.92440 -9.81010 -9.73686 -9.47310 -8.62358 -8.43606 -8.28366 -6.84949 -5.71147 -3.07230 1.95242 2.57068 2.84167 3.08094 3.28990 3.38067 3.42808 3.45436 4.17693 4.43605 4.47152 4.50683 4.57978 4.63503 4.69598 4.88161 4.90634 5.00100 5.02045 5.06820 5.18109 5.27433 5.40421 5.43242 5.44374 5.44979 5.52507 5.55354 5.61652 5.64383 5.65599 5.67845 5.69023 5.75020 5.80559 5.95175 6.01904 6.03980 6.13823 6.25538 6.29017 6.39535 6.47618 6.57867 6.70422 6.79905 7.08899 7.49998 7.60836 7.81994 7.87722 8.04241 8.25519 8.40560 9.20405 9.81368 10.44441 11.38660 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013647 B = 0.002809 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.286117 B = 9967.048510 C =11074.638947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.011 4.011 3 C -0.138 4.138 4 C 0.211 3.789 5 N -0.489 5.489 6 C -0.033 4.033 7 C -0.055 4.055 8 N -0.452 5.452 9 C 0.118 3.882 10 C -0.150 4.150 11 C 0.531 3.469 12 O -0.532 6.532 13 N -0.600 5.600 14 C 0.100 3.900 15 C -0.124 4.124 16 C -0.110 4.110 17 H 0.098 0.902 18 C 0.142 3.858 19 N -0.603 5.603 20 C -0.234 4.234 21 H 0.078 0.922 22 C -0.006 4.006 23 N -0.916 5.916 24 Si 0.911 3.089 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.177 3.823 29 C 0.114 3.886 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.168 0.832 39 H 0.174 0.826 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.083 0.917 48 H 0.035 0.965 49 H 0.018 0.982 50 H 0.253 0.747 51 H 0.052 0.948 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.766 16.830 3.801 19.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.031 4.031 3 C -0.196 4.196 4 C -0.052 4.052 5 N -0.207 5.207 6 C -0.181 4.181 7 C -0.188 4.188 8 N -0.134 5.134 9 C -0.004 4.004 10 C -0.191 4.191 11 C 0.318 3.682 12 O -0.408 6.408 13 N -0.334 5.334 14 C -0.023 4.023 15 C -0.162 4.162 16 C -0.130 4.130 17 H 0.117 0.883 18 C 0.015 3.985 19 N -0.329 5.329 20 C -0.362 4.362 21 H 0.096 0.904 22 C -0.203 4.203 23 N -0.562 5.562 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.207 1.207 28 C 0.051 3.949 29 C 0.011 3.989 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.185 0.815 39 H 0.191 0.809 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.117 0.883 43 H 0.113 0.887 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.101 0.899 48 H 0.053 0.947 49 H 0.035 0.965 50 H 0.063 0.937 51 H 0.070 0.930 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.595 16.615 3.775 20.064 hybrid contribution 1.345 -1.647 0.222 2.138 sum -9.250 14.968 3.997 18.044 Atomic orbital electron populations 1.21771 0.93095 1.02205 1.02633 1.19575 0.96729 0.95780 0.91058 1.21770 1.00951 0.94226 1.02683 1.23195 0.97236 0.89135 0.95599 1.70156 1.23926 1.27634 0.99004 1.22251 1.01666 0.94680 0.99510 1.22790 1.08366 1.04715 0.82888 1.45509 1.38227 1.22815 1.06884 1.21623 0.95688 0.96772 0.86354 1.21937 0.98243 1.01015 0.97868 1.19710 0.79960 0.84375 0.84136 1.90769 1.57682 1.27199 1.65186 1.48358 1.23318 1.31065 1.30615 1.22342 0.94008 0.88046 0.97946 1.22753 1.00354 0.97121 0.96008 1.23149 0.95924 0.93694 1.00231 0.88333 1.21307 0.94741 0.86610 0.95806 1.44224 1.04388 1.01766 1.82555 1.19007 0.90301 0.85953 1.40969 0.90444 1.24839 0.96217 0.97436 1.01799 1.69986 1.11190 1.20039 1.55025 0.86138 0.79664 0.82053 0.77989 1.21646 1.21632 1.20673 1.21234 0.83609 0.88992 1.01033 1.22621 0.93240 0.96239 0.86824 0.90238 0.91389 0.91863 0.92743 0.90037 0.91856 0.91362 0.92792 0.81502 0.80921 0.88122 0.87655 0.88328 0.88691 0.90979 0.91295 0.91013 0.89885 0.94710 0.96477 0.93657 0.92999 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.18 37.16 0.34 -0.86 16 2 C -0.01 -0.11 3.25 -91.77 -0.30 -0.40 16 3 C -0.14 -1.15 9.18 37.16 0.34 -0.81 16 4 C 0.21 2.51 6.41 -155.41 -1.00 1.52 16 5 N -0.49 -6.50 11.25 -10.81 -0.12 -6.62 16 6 C -0.03 -0.39 11.87 -17.81 -0.21 -0.61 16 7 C -0.05 -0.62 11.58 -16.56 -0.19 -0.81 16 8 N -0.45 -5.29 2.75 -113.90 -0.31 -5.60 16 9 C 0.12 1.37 4.98 -4.04 -0.02 1.35 16 10 C -0.15 -1.76 5.02 -27.88 -0.14 -1.90 16 11 C 0.53 8.64 7.40 -10.99 -0.08 8.56 16 12 O -0.53 -10.76 15.86 5.55 0.09 -10.67 16 13 N -0.60 -9.65 2.98 -162.41 -0.48 -10.14 16 14 C 0.10 1.24 6.22 -2.57 -0.02 1.22 16 15 C -0.12 -1.41 6.34 -24.63 -0.16 -1.57 16 16 C -0.11 -1.71 4.33 -87.74 -0.38 -2.09 16 17 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 18 C 0.14 2.74 6.45 -3.39 -0.02 2.71 16 19 N -0.60 -15.11 3.38 -172.01 -0.58 -15.69 16 20 C -0.23 -6.48 10.25 -15.06 -0.15 -6.63 16 21 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 22 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 23 N -0.92 -27.38 10.24 55.49 0.57 -26.81 16 24 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 C 0.18 4.34 4.91 -3.71 -0.02 4.32 16 29 C 0.11 2.12 3.60 -66.33 -0.24 1.88 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.72 6.85 -51.93 -0.36 0.36 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.17 1.59 8.06 -52.49 -0.42 1.17 16 40 H 0.10 1.14 7.24 -51.93 -0.38 0.76 16 41 H 0.11 1.32 8.09 -51.93 -0.42 0.90 16 42 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.09 0.93 7.84 -51.93 -0.41 0.52 16 44 H 0.07 0.98 7.18 -51.93 -0.37 0.60 16 45 H 0.07 0.66 7.45 -51.93 -0.39 0.27 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 48 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.02 0.33 6.52 -51.93 -0.34 -0.01 16 50 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 51 H 0.05 1.45 7.33 -51.93 -0.38 1.07 16 52 H 0.05 1.51 6.65 -51.93 -0.35 1.17 16 LS Contribution 408.84 15.07 6.16 6.16 Total: -1.00 -34.45 408.84 -10.89 -45.34 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -8.85 Total: 1.25 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -2.34 Total: 5.62 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: -0.93 Total: -64.87 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.45 -10.89 -45.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076322942.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.578 kcal (2) G-P(sol) polarization free energy of solvation -34.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds