Wall clock time and date at job start Wed Apr 1 2020 05:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46883 * 2 1 4 4 C 1.50697 * 109.47086 * 120.00168 * 2 1 3 5 5 N 1.30503 * 125.65263 * 300.03877 * 4 2 1 6 6 C 1.34121 * 109.25851 * 179.97438 * 5 4 2 7 7 C 1.34674 * 108.02191 * 359.73624 * 6 5 4 8 8 N 1.35048 * 125.64756 * 120.00541 * 4 2 1 9 9 C 1.46498 * 126.39884 * 0.03127 * 8 4 2 10 10 C 1.53001 * 109.46952 * 85.00408 * 9 8 4 11 11 C 1.50701 * 109.47100 * 180.02562 * 10 9 8 12 12 O 1.21290 * 119.99650 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00312 * 180.02562 * 11 10 9 14 14 C 1.47399 * 125.58896 * 0.02562 * 13 11 10 15 15 C 1.54857 * 104.81277 * 204.60973 * 14 13 11 16 16 C 1.55120 * 101.77763 * 322.81553 * 15 14 13 17 17 H 1.08994 * 113.46269 * 159.24100 * 16 15 14 18 18 C 1.54044 * 108.25822 * 286.09348 * 16 15 14 19 19 N 1.46700 * 106.83082 * 135.80973 * 18 16 15 20 20 C 1.36942 * 125.32308 * 161.80121 * 19 18 16 21 21 H 1.07997 * 119.99724 * 359.97438 * 20 19 18 22 22 C 1.38816 * 119.99846 * 179.97438 * 20 19 18 23 23 N 1.31617 * 120.00061 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99746 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47573 * 89.99822 * 24 22 20 26 26 H 1.48505 * 109.46896 * 209.99695 * 24 22 20 27 27 H 1.48502 * 109.47305 * 329.99185 * 24 22 20 28 28 C 1.46632 * 109.35438 * 341.81226 * 19 18 16 29 29 C 1.46728 * 125.59242 * 180.02562 * 13 11 10 30 30 H 1.09005 * 111.83795 * 55.80975 * 29 13 11 31 31 H 1.08998 * 109.47042 * 299.99316 * 1 2 3 32 32 H 1.09001 * 109.47050 * 60.00188 * 1 2 3 33 33 H 1.09005 * 109.46533 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47390 * 240.00319 * 2 1 3 35 35 H 1.08995 * 109.46999 * 300.00171 * 3 2 1 36 36 H 1.09002 * 109.46847 * 59.99986 * 3 2 1 37 37 H 1.08999 * 109.47004 * 180.02562 * 3 2 1 38 38 H 1.08001 * 125.99148 * 180.02562 * 6 5 4 39 39 H 1.08000 * 126.59666 * 180.28151 * 7 6 5 40 40 H 1.09003 * 109.47085 * 325.00400 * 9 8 4 41 41 H 1.08998 * 109.47111 * 205.00419 * 9 8 4 42 42 H 1.08996 * 109.47200 * 59.99680 * 10 9 8 43 43 H 1.09006 * 109.46914 * 299.99841 * 10 9 8 44 44 H 1.08997 * 110.37063 * 85.77301 * 14 13 11 45 45 H 1.09004 * 110.36669 * 323.44241 * 14 13 11 46 46 H 1.08998 * 110.96734 * 80.94083 * 15 14 13 47 47 H 1.09004 * 110.96567 * 204.65615 * 15 14 13 48 48 H 1.09007 * 109.98405 * 255.15083 * 18 16 15 49 49 H 1.09000 * 109.98835 * 16.45722 * 18 16 15 50 50 H 0.96996 * 120.00231 * 180.02562 * 23 22 20 51 51 H 1.08997 * 109.75755 * 120.93336 * 28 19 18 52 52 H 1.09002 * 109.76043 * 241.63440 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7854 -0.3625 2.4637 6 6 2.3925 -1.2216 3.2957 7 6 3.0355 -2.1402 2.5497 8 7 2.8121 -1.8130 1.2394 9 6 3.3192 -2.5288 0.0661 10 6 4.6109 -1.8660 -0.4167 11 6 5.1322 -2.6018 -1.6241 12 8 4.5301 -3.5622 -2.0556 13 7 6.2680 -2.1935 -2.2237 14 6 7.0957 -1.0483 -1.8040 15 6 7.8505 -0.6148 -3.0849 16 6 8.1437 -1.9816 -3.7574 17 1 8.3466 -1.9050 -4.8255 18 6 9.2696 -2.6761 -2.9681 19 7 8.8710 -4.0784 -2.8045 20 6 9.7138 -5.1088 -2.4832 21 1 10.7656 -4.9181 -2.3292 22 6 9.2161 -6.3984 -2.3553 23 7 7.9342 -6.6307 -2.5424 24 14 10.3659 -7.8040 -1.9177 25 1 10.4309 -7.9492 -0.4413 26 1 9.8576 -9.0641 -2.5170 27 1 11.7232 -7.5165 -2.4472 28 6 7.4290 -4.2043 -3.0390 29 6 6.8834 -2.8159 -3.4013 30 1 6.1904 -2.8684 -4.2410 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0278 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.6766 1.9563 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.1300 1.4426 -0.0005 38 1 2.3661 -1.1861 4.3748 39 1 3.6174 -2.9735 2.9150 40 1 2.5746 -2.4959 -0.7294 41 1 3.5207 -3.5663 0.3324 42 1 5.3554 -1.8988 0.3787 43 1 4.4093 -0.8284 -0.6831 44 1 7.8022 -1.3534 -1.0322 45 1 6.4646 -0.2364 -1.4424 46 1 7.2172 0.0045 -3.7200 47 1 8.7759 -0.0957 -2.8354 48 1 10.2054 -2.6172 -3.5241 49 1 9.3855 -2.2053 -1.9919 50 1 7.5864 -7.5317 -2.4527 51 1 7.2485 -4.8971 -3.8609 52 1 6.9392 -4.5684 -2.1359 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076322942.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:45 Heat of formation + Delta-G solvation = 31.599993 kcal Electronic energy + Delta-G solvation = -31551.682379 eV Core-core repulsion = 27551.924540 eV Total energy + Delta-G solvation = -3999.757839 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.14356 -41.63290 -39.51411 -36.55602 -36.25864 -35.82841 -34.00079 -32.48860 -31.74106 -30.34947 -29.68000 -28.01013 -27.98972 -26.65035 -25.74145 -23.82420 -23.53132 -22.52310 -22.12293 -21.01374 -20.00515 -19.94357 -18.96866 -18.50093 -17.76882 -17.04743 -16.98554 -16.61663 -16.39131 -15.77208 -15.74431 -15.48589 -15.19350 -14.90313 -14.71661 -14.50463 -14.46715 -14.13453 -14.01958 -13.90540 -13.83434 -13.45031 -13.33224 -13.00404 -12.94144 -12.89277 -12.82095 -12.51870 -12.43945 -12.36325 -12.14519 -12.09131 -11.88296 -11.86193 -11.83842 -11.59834 -11.41121 -11.04031 -10.91134 -10.75043 -10.57330 -9.63934 -9.31397 -8.91435 -7.86237 -5.24303 1.06510 1.41066 1.43259 1.52329 1.54493 1.64026 2.14852 2.18693 2.46008 3.30392 3.32308 3.43229 3.55350 3.57287 3.61798 3.71230 3.80825 3.90991 4.00145 4.13156 4.19033 4.22866 4.26792 4.34871 4.37046 4.44897 4.53208 4.58982 4.60802 4.70894 4.75723 4.76069 4.85022 4.85275 4.92635 4.93066 4.98886 5.09755 5.10633 5.18238 5.28815 5.31067 5.37575 5.40113 5.43396 5.45907 5.62057 5.77705 5.84628 6.17110 6.21101 6.57807 7.06109 7.13842 7.15376 7.77476 8.38621 9.21802 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013647 B = 0.002809 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.286117 B = 9967.048510 C =11074.638947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.015 4.015 3 C -0.133 4.133 4 C 0.207 3.793 5 N -0.515 5.515 6 C -0.046 4.046 7 C -0.063 4.063 8 N -0.455 5.455 9 C 0.125 3.875 10 C -0.130 4.130 11 C 0.523 3.477 12 O -0.583 6.583 13 N -0.602 5.602 14 C 0.093 3.907 15 C -0.106 4.106 16 C -0.098 4.098 17 H 0.116 0.884 18 C 0.134 3.866 19 N -0.624 5.624 20 C -0.241 4.241 21 H 0.087 0.913 22 C -0.070 4.070 23 N -0.951 5.951 24 Si 0.978 3.022 25 H -0.287 1.287 26 H -0.298 1.298 27 H -0.263 1.263 28 C 0.194 3.806 29 C 0.119 3.881 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.044 0.956 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.185 0.815 39 H 0.189 0.811 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.126 0.874 44 H 0.060 0.940 45 H 0.111 0.889 46 H 0.101 0.899 47 H 0.110 0.890 48 H 0.042 0.958 49 H 0.031 0.969 50 H 0.243 0.757 51 H -0.001 1.001 52 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.730 20.259 3.751 22.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.035 4.035 3 C -0.191 4.191 4 C -0.055 4.055 5 N -0.234 5.234 6 C -0.193 4.193 7 C -0.196 4.196 8 N -0.137 5.137 9 C 0.002 3.998 10 C -0.171 4.171 11 C 0.312 3.688 12 O -0.463 6.463 13 N -0.335 5.335 14 C -0.029 4.029 15 C -0.144 4.144 16 C -0.118 4.118 17 H 0.134 0.866 18 C 0.009 3.991 19 N -0.351 5.351 20 C -0.370 4.370 21 H 0.105 0.895 22 C -0.263 4.263 23 N -0.600 5.600 24 Si 0.806 3.194 25 H -0.214 1.214 26 H -0.225 1.225 27 H -0.188 1.188 28 C 0.068 3.932 29 C 0.014 3.986 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.063 0.937 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.202 0.798 39 H 0.206 0.794 40 H 0.121 0.879 41 H 0.107 0.893 42 H 0.123 0.877 43 H 0.144 0.856 44 H 0.079 0.921 45 H 0.129 0.871 46 H 0.120 0.880 47 H 0.128 0.872 48 H 0.060 0.940 49 H 0.048 0.952 50 H 0.052 0.948 51 H 0.017 0.983 52 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -9.512 20.122 3.744 22.569 hybrid contribution 1.037 -2.716 0.258 2.919 sum -8.475 17.405 4.002 19.768 Atomic orbital electron populations 1.21745 0.92710 1.01739 1.03151 1.19755 0.97086 0.96418 0.90229 1.21737 1.00991 0.93271 1.03092 1.23712 0.96719 0.88990 0.96108 1.70164 1.24844 1.28586 0.99818 1.22641 1.01562 0.94602 1.00479 1.23131 1.08497 1.05117 0.82825 1.45536 1.38391 1.22893 1.06866 1.21482 0.95883 0.95990 0.86461 1.21818 0.97939 1.01739 0.95564 1.20533 0.79629 0.83846 0.84751 1.90748 1.59286 1.29506 1.66745 1.48458 1.23399 1.31790 1.29837 1.22652 0.94198 0.87596 0.98436 1.22797 1.01995 0.94656 0.94946 1.23140 0.92030 0.95438 1.01190 0.86553 1.21601 0.96514 0.83857 0.97099 1.44541 1.04412 1.03897 1.82237 1.19473 0.91158 0.86941 1.39449 0.89504 1.25729 0.97630 1.00219 1.02733 1.70276 1.13196 1.19611 1.56912 0.85084 0.78394 0.78411 0.77497 1.21419 1.22463 1.18760 1.20788 0.83774 0.91891 0.96732 1.22310 0.94669 0.93693 0.87924 0.90473 0.92459 0.89723 0.93703 0.89171 0.89788 0.92601 0.92625 0.79794 0.79401 0.87871 0.89260 0.87727 0.85585 0.92143 0.87115 0.88046 0.87154 0.93962 0.95163 0.94821 0.98259 0.97919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.18 71.98 0.66 -1.48 16 2 C -0.01 -0.25 3.25 -11.54 -0.04 -0.29 16 3 C -0.13 -1.85 9.18 71.98 0.66 -1.19 16 4 C 0.21 4.68 6.41 138.12 0.89 5.56 16 5 N -0.52 -13.27 11.25 -188.13 -2.12 -15.38 16 6 C -0.05 -1.05 11.87 83.53 0.99 -0.06 16 7 C -0.06 -1.39 11.58 83.09 0.96 -0.42 16 8 N -0.45 -10.18 2.75 -514.27 -1.42 -11.59 16 9 C 0.12 2.84 4.98 86.38 0.43 3.27 16 10 C -0.13 -2.82 5.02 29.85 0.15 -2.67 16 11 C 0.52 16.89 7.40 87.66 0.65 17.54 16 12 O -0.58 -24.66 15.86 -3.06 -0.05 -24.71 16 13 N -0.60 -18.60 2.98 -786.13 -2.34 -20.94 16 14 C 0.09 1.93 6.22 86.84 0.54 2.47 16 15 C -0.11 -1.86 6.34 31.95 0.20 -1.66 16 16 C -0.10 -2.79 4.33 -8.93 -0.04 -2.83 16 17 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 18 C 0.13 4.94 6.45 86.69 0.56 5.50 16 19 N -0.62 -31.92 3.38 -698.13 -2.36 -34.28 16 20 C -0.24 -13.59 10.25 84.03 0.86 -12.73 16 21 H 0.09 4.60 7.83 -2.91 -0.02 4.58 16 22 C -0.07 -4.12 5.48 84.86 0.47 -3.65 16 23 N -0.95 -60.33 10.24 21.65 0.22 -60.11 16 24 Si 0.98 46.83 29.55 68.60 2.03 48.86 16 25 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 26 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 27 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 28 C 0.19 10.06 4.91 86.52 0.43 10.49 16 29 C 0.12 4.39 3.60 45.90 0.17 4.56 16 30 H 0.08 2.87 8.14 -2.38 -0.02 2.85 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.09 1.37 6.85 -2.39 -0.02 1.35 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.19 3.30 8.06 -2.91 -0.02 3.28 16 39 H 0.19 3.33 8.06 -2.91 -0.02 3.31 16 40 H 0.10 2.29 7.24 -2.39 -0.02 2.28 16 41 H 0.09 2.32 8.09 -2.39 -0.02 2.30 16 42 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.13 1.97 7.84 -2.38 -0.02 1.95 16 44 H 0.06 1.43 7.18 -2.39 -0.02 1.42 16 45 H 0.11 1.45 7.45 -2.38 -0.02 1.43 16 46 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.11 1.45 8.08 -2.38 -0.02 1.43 16 48 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 49 H 0.03 1.07 6.52 -2.39 -0.02 1.05 16 50 H 0.24 15.15 8.31 -92.71 -0.77 14.38 16 51 H 0.00 -0.05 7.33 -2.39 -0.02 -0.06 16 52 H 0.00 0.16 6.65 -2.39 -0.02 0.14 16 Total: -1.00 -82.05 408.84 3.39 -78.66 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.89 Total: 17.10 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 8.53 Total: 22.40 kcal Atomic # 7 Polarization: -134.30 SS G_CDS: -8.01 Total: -142.31 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.05 Total: -24.71 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -82.05 3.39 -78.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076322942.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.256 kcal (2) G-P(sol) polarization free energy of solvation -82.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds