Wall clock time and date at job start Wed Apr 1 2020 05:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47412 * 2 1 4 4 C 1.50709 * 109.46826 * 119.99932 * 2 1 3 5 5 C 1.35369 * 126.38497 * 325.32185 * 4 2 1 6 6 C 1.41500 * 105.50112 * 180.14512 * 5 4 2 7 7 C 1.47708 * 126.51787 * 179.84702 * 6 5 4 8 8 O 1.21569 * 119.99903 * 359.71105 * 7 6 5 9 9 N 1.34771 * 120.00180 * 179.70977 * 7 6 5 10 10 C 1.46498 * 120.00252 * 179.97438 * 9 7 6 11 11 H 1.08994 * 112.95161 * 336.41251 * 10 9 7 12 12 C 1.53958 * 113.66040 * 107.81515 * 10 9 7 13 13 C 1.53946 * 87.29612 * 139.20611 * 12 10 9 14 14 H 1.09001 * 113.66711 * 89.73760 * 13 12 10 15 15 N 1.46497 * 113.66666 * 220.79618 * 13 12 10 16 16 C 1.36939 * 120.00358 * 252.18812 * 15 13 12 17 17 H 1.07997 * 119.99395 * 359.97438 * 16 15 13 18 18 C 1.38809 * 120.00162 * 179.97438 * 16 15 13 19 19 N 1.31625 * 119.99855 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00233 * 359.97438 * 18 16 15 21 21 H 1.48493 * 109.46950 * 89.99893 * 20 18 16 22 22 H 1.48500 * 109.47131 * 210.00444 * 20 18 16 23 23 H 1.48500 * 109.46945 * 329.99951 * 20 18 16 24 24 C 1.52907 * 113.66424 * 205.00132 * 10 9 7 25 25 C 1.52909 * 121.13536 * 94.91764 * 24 10 9 26 26 C 1.53952 * 86.78252 * 209.38099 * 25 24 10 27 27 C 1.53064 * 121.17777 * 346.28123 * 24 10 9 28 28 N 1.31810 * 106.96456 * 359.57985 * 6 5 4 29 29 N 1.28473 * 110.07091 * 0.26840 * 28 6 5 30 30 C 1.46505 * 124.88229 * 179.97438 * 29 28 6 31 31 H 1.08995 * 109.47478 * 300.00164 * 1 2 3 32 32 H 1.09000 * 109.46846 * 60.00537 * 1 2 3 33 33 H 1.09006 * 109.47246 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47021 * 239.99381 * 2 1 3 35 35 H 1.09005 * 109.47054 * 59.99498 * 3 2 1 36 36 H 1.08993 * 109.47723 * 179.97438 * 3 2 1 37 37 H 1.09007 * 109.47004 * 300.00140 * 3 2 1 38 38 H 1.07997 * 127.24461 * 359.97438 * 5 4 2 39 39 H 0.97006 * 120.00008 * 0.02562 * 9 7 6 40 40 H 1.09000 * 113.57861 * 24.60627 * 12 10 9 41 41 H 1.08997 * 113.58119 * 253.81025 * 12 10 9 42 42 H 0.97002 * 119.99897 * 72.18620 * 15 13 12 43 43 H 0.97003 * 119.99962 * 179.97438 * 19 18 16 44 44 H 1.09000 * 113.66588 * 94.90895 * 25 24 10 45 45 H 1.09002 * 113.66049 * 323.84790 * 25 24 10 46 46 H 1.09002 * 113.58142 * 139.33437 * 26 25 24 47 47 H 1.09004 * 113.57653 * 270.05037 * 26 25 24 48 48 H 1.09006 * 113.66264 * 36.13819 * 27 24 10 49 49 H 1.09001 * 113.71778 * 265.03884 * 27 24 10 50 50 H 1.09002 * 109.46771 * 89.97083 * 30 29 28 51 51 H 1.08990 * 109.47163 * 209.97036 * 30 29 28 52 52 H 1.08993 * 109.46909 * 329.97552 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 1.4549 -0.7014 2.4549 6 6 2.2885 -1.5012 3.2720 7 6 2.0886 -1.8011 4.7045 8 8 1.1321 -1.3380 5.2947 9 7 2.9667 -2.5881 5.3571 10 6 2.7688 -2.8851 6.7779 11 1 2.1648 -2.1353 7.2888 12 6 2.3177 -4.3318 7.0497 13 6 3.2772 -4.3275 8.2537 14 1 2.8161 -3.9830 9.1793 15 7 4.0210 -5.5789 8.4173 16 6 3.7109 -6.4306 9.4439 17 1 2.9182 -6.1794 10.1330 18 6 4.4154 -7.6166 9.5986 19 7 4.1169 -8.4354 10.5850 20 14 5.7860 -8.0513 8.4062 21 1 7.0728 -7.5105 8.9127 22 1 5.8841 -9.5278 8.2818 23 1 5.4904 -7.4611 7.0759 24 6 4.0598 -3.2403 7.5163 25 6 4.8507 -2.1786 8.2815 26 6 6.1065 -3.0116 7.9667 27 6 5.3440 -3.5720 6.7523 28 7 3.2740 -1.9325 2.5104 29 7 3.1388 -1.4795 1.3158 30 6 4.0538 -1.7572 0.2059 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6767 1.9563 -0.8900 38 1 0.5503 -0.1890 2.7472 39 1 3.7302 -2.9574 4.8862 40 1 2.6050 -5.0327 6.2659 41 1 1.2676 -4.4159 7.3294 42 1 4.7332 -5.8043 7.7985 43 1 4.6090 -9.2644 10.6929 44 1 4.6099 -2.1346 9.3437 45 1 4.8443 -1.1991 7.8033 46 1 6.9735 -2.4085 7.6968 47 1 6.3328 -3.7624 8.7238 48 1 5.4765 -2.9848 5.8435 49 1 5.4969 -4.6397 6.5944 50 1 3.7256 -2.6538 -0.3199 51 1 4.0564 -0.9125 -0.4829 52 1 5.0602 -1.9120 0.5948 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078621481.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:53 Heat of formation + Delta-G solvation = 94.200113 kcal Electronic energy + Delta-G solvation = -30814.608579 eV Core-core repulsion = 26817.565284 eV Total energy + Delta-G solvation = -3997.043295 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.96146 -40.59223 -38.70539 -36.21182 -34.92606 -34.16622 -33.75410 -32.36300 -30.46730 -29.86969 -27.83406 -27.65334 -25.58424 -24.95961 -24.19177 -23.43726 -22.87944 -21.44378 -20.56783 -20.48164 -19.55583 -18.38444 -17.74370 -17.00974 -16.61904 -16.55758 -16.07703 -15.16250 -15.06999 -14.87579 -14.58252 -14.54658 -14.25027 -14.16375 -13.84924 -13.54165 -13.14315 -13.07668 -12.96427 -12.68271 -12.63291 -12.52541 -12.15258 -12.07644 -11.94013 -11.75434 -11.70724 -11.48367 -11.37856 -11.02806 -10.97468 -10.87248 -10.76510 -10.26716 -10.13820 -9.94295 -9.84285 -9.72291 -9.49106 -9.33400 -9.16357 -8.86929 -8.62371 -7.25259 -5.77510 -3.12647 1.45258 1.90794 2.16783 3.28616 3.35680 3.37998 3.44025 3.45872 3.98652 4.08791 4.35420 4.57332 4.57629 4.63167 4.67177 4.73902 4.82113 4.85729 4.93421 4.98039 5.09121 5.15027 5.16957 5.19769 5.27682 5.32436 5.38227 5.40790 5.53495 5.54352 5.58948 5.72098 5.73621 5.85204 5.87872 5.90680 5.91975 5.99611 6.17089 6.21920 6.23137 6.31702 6.35202 6.48570 6.57499 6.59809 6.75140 6.83887 7.00491 7.55137 7.82025 7.99924 8.33146 8.42417 9.20032 9.92370 10.12488 11.40738 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017360 B = 0.002366 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.497279 B =11831.170907 C =12090.848704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.023 4.023 3 C -0.145 4.145 4 C 0.015 3.985 5 C -0.173 4.173 6 C -0.011 4.011 7 C 0.602 3.398 8 O -0.537 6.537 9 N -0.698 5.698 10 C 0.131 3.869 11 H 0.115 0.885 12 C -0.174 4.174 13 C 0.200 3.800 14 H 0.091 0.909 15 N -0.731 5.731 16 C -0.244 4.244 17 H 0.092 0.908 18 C 0.005 3.995 19 N -0.932 5.932 20 Si 0.880 3.120 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.278 1.278 24 C -0.123 4.123 25 C -0.123 4.123 26 C -0.133 4.133 27 C -0.119 4.119 28 N -0.262 5.262 29 N -0.282 5.282 30 C 0.084 3.916 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.160 0.840 39 H 0.404 0.596 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.363 0.637 43 H 0.259 0.741 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.058 0.942 47 H 0.088 0.912 48 H 0.075 0.925 49 H 0.069 0.931 50 H 0.085 0.915 51 H 0.093 0.907 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.717 20.126 -25.240 32.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.043 4.043 3 C -0.202 4.202 4 C -0.109 4.109 5 C -0.201 4.201 6 C -0.172 4.172 7 C 0.386 3.614 8 O -0.412 6.412 9 N -0.348 5.348 10 C 0.027 3.973 11 H 0.132 0.868 12 C -0.216 4.216 13 C 0.087 3.913 14 H 0.109 0.891 15 N -0.371 5.371 16 C -0.374 4.374 17 H 0.110 0.890 18 C -0.190 4.190 19 N -0.580 5.580 20 Si 0.710 3.290 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.125 4.125 25 C -0.161 4.161 26 C -0.170 4.170 27 C -0.157 4.157 28 N -0.098 5.098 29 N -0.070 5.070 30 C -0.056 4.056 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.178 0.822 39 H 0.240 0.760 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.198 0.802 43 H 0.069 0.931 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.077 0.923 47 H 0.106 0.894 48 H 0.094 0.906 49 H 0.088 0.912 50 H 0.103 0.897 51 H 0.112 0.888 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.420 19.601 -24.632 31.482 hybrid contribution 0.770 -0.306 -1.254 1.503 sum 0.350 19.295 -25.886 32.288 Atomic orbital electron populations 1.21828 0.92926 1.02694 1.02685 1.19668 0.96898 0.95377 0.92407 1.21862 1.00977 0.94614 1.02794 1.21359 0.90959 1.00409 0.98201 1.21454 1.02823 1.04747 0.91080 1.21983 0.95847 1.03952 0.95368 1.16913 0.82567 0.78430 0.83483 1.90778 1.30257 1.52967 1.67192 1.45832 1.27894 1.49678 1.11402 1.22323 0.97841 0.97700 0.79478 0.86752 1.24248 1.01192 0.94743 1.01395 1.21042 0.90415 0.85098 0.94702 0.89081 1.42695 1.40609 1.19750 1.34031 1.19138 1.15590 0.98458 1.04218 0.89005 1.24670 0.99342 0.97082 0.97950 1.69700 1.43566 1.12456 1.32234 0.86620 0.83301 0.77663 0.81378 1.20983 1.21728 1.20388 1.23666 0.92659 0.98341 0.97860 1.22679 0.96210 0.96732 1.00455 1.22758 0.96217 0.99667 0.98404 1.22495 0.95072 1.01158 0.96984 1.73542 1.23999 1.20720 0.91509 1.45283 1.19378 1.34557 1.07770 1.22156 0.93785 1.03298 0.86369 0.91634 0.91751 0.92103 0.90225 0.91733 0.92774 0.91656 0.82215 0.75996 0.90297 0.91528 0.80238 0.93064 0.91079 0.90787 0.92284 0.89353 0.90629 0.91194 0.89680 0.88810 0.88378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 8.78 37.16 0.33 -0.44 16 2 C -0.02 -0.13 2.89 -91.77 -0.27 -0.40 16 3 C -0.14 -0.69 9.18 37.16 0.34 -0.35 16 4 C 0.01 0.13 5.84 -82.21 -0.48 -0.35 16 5 C -0.17 -2.03 9.95 -39.36 -0.39 -2.42 16 6 C -0.01 -0.16 7.13 -82.77 -0.59 -0.75 16 7 C 0.60 9.53 7.82 -12.39 -0.10 9.43 16 8 O -0.54 -9.91 16.53 5.30 0.09 -9.83 16 9 N -0.70 -10.29 5.25 -54.36 -0.29 -10.58 16 10 C 0.13 2.06 4.12 -67.48 -0.28 1.78 16 11 H 0.11 1.86 7.46 -51.93 -0.39 1.47 16 12 C -0.17 -3.08 7.68 -25.75 -0.20 -3.28 16 13 C 0.20 3.81 4.36 -67.48 -0.29 3.52 16 14 H 0.09 1.77 8.10 -51.93 -0.42 1.35 16 15 N -0.73 -16.88 5.13 -52.99 -0.27 -17.15 16 16 C -0.24 -6.78 10.45 -15.06 -0.16 -6.94 16 17 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 18 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 19 N -0.93 -29.17 13.97 55.49 0.78 -28.40 16 20 Si 0.88 21.99 27.74 -169.99 -4.71 17.27 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 23 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 24 C -0.12 -1.93 1.07 -154.63 -0.16 -2.09 16 25 C -0.12 -1.77 7.84 -26.28 -0.21 -1.97 16 26 C -0.13 -1.95 8.08 -25.75 -0.21 -2.16 16 27 C -0.12 -1.78 6.79 -26.20 -0.18 -1.96 16 28 N -0.26 -3.26 11.67 33.42 0.39 -2.87 16 29 N -0.28 -2.66 3.70 -63.85 -0.24 -2.89 16 30 C 0.08 0.40 10.89 59.85 0.65 1.05 16 31 H 0.06 0.38 7.35 -51.93 -0.38 0.00 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.32 7.42 -51.93 -0.39 -0.06 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.06 0.22 8.14 -51.92 -0.42 -0.20 16 38 H 0.16 1.75 7.46 -52.49 -0.39 1.36 16 39 H 0.40 5.54 6.76 -40.82 -0.28 5.27 16 40 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.36 8.27 3.78 -40.82 -0.15 8.12 16 43 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 48 H 0.08 0.98 7.03 -51.93 -0.37 0.62 16 49 H 0.07 1.16 6.41 -51.93 -0.33 0.83 16 50 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 51 H 0.09 0.21 7.44 -51.93 -0.39 -0.18 16 52 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 414.53 15.07 6.25 6.25 Total: -1.00 -34.29 414.53 -8.86 -43.16 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -8.57 Total: 12.31 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -2.29 Total: -7.26 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: 0.37 Total: -61.90 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.27 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.29 -8.86 -43.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078621481.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.357 kcal (2) G-P(sol) polarization free energy of solvation -34.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds