Wall clock time and date at job start Wed Apr 1 2020 05:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46959 * 2 1 4 4 C 1.50696 * 109.47529 * 120.00385 * 2 1 3 5 5 C 1.35369 * 126.38324 * 325.02365 * 4 2 1 6 6 C 1.41497 * 105.50170 * 179.97438 * 5 4 2 7 7 C 1.47716 * 126.51666 * 179.97438 * 6 5 4 8 8 O 1.21567 * 119.99921 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00131 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00198 * 180.02562 * 9 7 6 11 11 H 1.09000 * 112.94972 * 26.90123 * 10 9 7 12 12 C 1.53952 * 113.66105 * 255.49637 * 10 9 7 13 13 C 1.53950 * 87.37851 * 270.21915 * 12 10 9 14 14 H 1.09006 * 113.66206 * 89.78396 * 13 12 10 15 15 N 1.46500 * 113.66037 * 220.83072 * 13 12 10 16 16 C 1.36936 * 120.00465 * 255.49663 * 15 13 12 17 17 H 1.08000 * 119.99881 * 0.02562 * 16 15 13 18 18 C 1.38807 * 120.00046 * 180.02562 * 16 15 13 19 19 N 1.31621 * 120.00482 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 120.00009 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47186 * 89.99509 * 20 18 16 22 22 H 1.48501 * 109.47206 * 210.00033 * 20 18 16 23 23 H 1.48505 * 109.46648 * 329.99336 * 20 18 16 24 24 C 1.52909 * 113.66062 * 158.31111 * 10 9 7 25 25 C 1.52907 * 121.13536 * 323.85110 * 24 10 9 26 26 C 1.53958 * 86.78205 * 209.38733 * 25 24 10 27 27 C 1.52915 * 121.13447 * 215.29263 * 24 10 9 28 28 N 1.31801 * 106.96441 * 0.26467 * 6 5 4 29 29 N 1.28469 * 110.07353 * 359.55315 * 28 6 5 30 30 C 1.46498 * 124.88318 * 180.15995 * 29 28 6 31 31 H 1.09002 * 109.47010 * 299.99803 * 1 2 3 32 32 H 1.08997 * 109.47376 * 59.99419 * 1 2 3 33 33 H 1.09000 * 109.47431 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46704 * 240.00916 * 2 1 3 35 35 H 1.09002 * 109.47099 * 60.00252 * 3 2 1 36 36 H 1.09003 * 109.47085 * 179.97438 * 3 2 1 37 37 H 1.08997 * 109.47551 * 300.00474 * 3 2 1 38 38 H 1.08003 * 127.24483 * 359.97438 * 5 4 2 39 39 H 0.97008 * 119.99530 * 0.02562 * 9 7 6 40 40 H 1.09002 * 113.58142 * 24.86467 * 12 10 9 41 41 H 1.09004 * 113.57653 * 155.58067 * 12 10 9 42 42 H 0.96999 * 120.00029 * 75.50463 * 15 13 12 43 43 H 0.96993 * 120.00234 * 180.02562 * 19 18 16 44 44 H 1.08994 * 113.66316 * 323.85618 * 25 24 10 45 45 H 1.08997 * 113.66044 * 94.91866 * 25 24 10 46 46 H 1.09000 * 113.57861 * 270.13288 * 26 25 24 47 47 H 1.08990 * 113.65166 * 139.34938 * 26 25 24 48 48 H 1.09004 * 113.66330 * 265.09006 * 27 24 10 49 49 H 1.09001 * 113.65876 * 36.13855 * 27 24 10 50 50 H 1.09004 * 109.47448 * 270.34024 * 30 29 28 51 51 H 1.08999 * 109.47515 * 30.34207 * 30 29 28 52 52 H 1.09000 * 109.46884 * 150.34603 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 6 1.4583 -0.6969 2.4562 6 6 2.2883 -1.5021 3.2715 7 6 2.0885 -1.8022 4.7040 8 8 1.1322 -1.3389 5.2944 9 7 2.9665 -2.5896 5.3564 10 6 2.7681 -2.8876 6.7769 11 1 1.7217 -2.8410 7.0789 12 6 3.7154 -2.1110 7.7094 13 6 4.7028 -3.2835 7.5666 14 1 5.3952 -3.1732 6.7320 15 7 5.3710 -3.6452 8.8191 16 6 6.6769 -3.2888 9.0263 17 1 7.2140 -2.7406 8.2665 18 6 7.3101 -3.6321 10.2129 19 7 6.6554 -4.2997 11.1391 20 14 9.0913 -3.1452 10.4958 21 1 9.1426 -1.8102 11.1440 22 1 9.7449 -4.1479 11.3748 23 1 9.8024 -3.0907 9.1932 24 6 3.4859 -4.1543 7.2443 25 6 3.6061 -5.3766 6.3336 26 6 3.6202 -6.2245 7.6185 27 6 2.8675 -5.0688 8.3024 28 7 3.2771 -1.9284 2.5113 29 7 3.1389 -1.4797 1.3155 30 6 4.0540 -1.7569 0.2056 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5137 -0.8901 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6766 1.9564 -0.8899 38 1 0.5565 -0.1802 2.7499 39 1 3.7298 -2.9589 4.8853 40 1 4.0813 -1.1781 7.2806 41 1 3.3277 -1.9881 8.7208 42 1 4.8885 -4.1374 9.5017 43 1 7.0978 -4.5392 11.9684 44 1 2.7292 -5.5443 5.7084 45 1 4.5407 -5.4149 5.7739 46 1 4.6198 -6.3916 8.0197 47 1 3.0360 -7.1415 7.5437 48 1 3.2120 -4.8611 9.3155 49 1 1.7829 -5.1499 8.2306 50 1 4.8367 -0.9986 0.1818 51 1 4.5047 -2.7399 0.3431 52 1 3.5017 -1.7386 -0.7339 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078621483.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:16 Heat of formation + Delta-G solvation = 91.070600 kcal Electronic energy + Delta-G solvation = -30738.699897 eV Core-core repulsion = 26741.520897 eV Total energy + Delta-G solvation = -3997.179000 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.91072 -40.46777 -38.61708 -36.16805 -34.92876 -33.97847 -33.69750 -32.12185 -30.00819 -29.67504 -27.71057 -27.60998 -25.39562 -24.81546 -24.05923 -23.53601 -22.88841 -21.81517 -20.65656 -20.15687 -19.42431 -18.00028 -17.55128 -16.88500 -16.57278 -16.50816 -15.75635 -15.13032 -14.97048 -14.76789 -14.53553 -14.44279 -14.12745 -14.09266 -13.72377 -13.55056 -13.31945 -13.04739 -12.91558 -12.58818 -12.51178 -12.40611 -12.04258 -11.94073 -11.69883 -11.66574 -11.62483 -11.32394 -11.28433 -10.92317 -10.85843 -10.77262 -10.55305 -10.14011 -10.11895 -9.93503 -9.74027 -9.56955 -9.33640 -9.28484 -9.10973 -8.80379 -8.56365 -6.92561 -5.76339 -3.04345 1.51285 1.95906 2.21917 3.29770 3.44099 3.49470 3.50716 3.51733 4.04660 4.13167 4.36283 4.59224 4.60005 4.70732 4.72527 4.86014 4.86697 5.00631 5.09083 5.12893 5.17655 5.21479 5.30927 5.32345 5.34069 5.39366 5.42170 5.51169 5.57679 5.63129 5.75804 5.77928 5.90474 5.92101 6.02048 6.08641 6.13108 6.17921 6.23386 6.28410 6.37323 6.49734 6.53793 6.60830 6.63709 6.75126 6.94320 7.00640 7.14616 7.61093 7.71916 7.88625 8.40004 8.42767 9.54201 10.12138 10.47331 11.46018 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014657 B = 0.002380 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.901776 B =11763.250593 C =12545.299904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.023 4.023 3 C -0.145 4.145 4 C 0.014 3.986 5 C -0.174 4.174 6 C -0.010 4.010 7 C 0.604 3.396 8 O -0.537 6.537 9 N -0.689 5.689 10 C 0.130 3.870 11 H 0.096 0.904 12 C -0.174 4.174 13 C 0.192 3.808 14 H 0.074 0.926 15 N -0.708 5.708 16 C -0.241 4.241 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.932 5.932 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.283 1.283 24 C -0.119 4.119 25 C -0.126 4.126 26 C -0.131 4.131 27 C -0.110 4.110 28 N -0.260 5.260 29 N -0.282 5.282 30 C 0.085 3.915 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.160 0.840 39 H 0.406 0.594 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.387 0.613 43 H 0.255 0.745 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.089 0.911 47 H 0.056 0.944 48 H 0.079 0.921 49 H 0.074 0.926 50 H 0.085 0.915 51 H 0.098 0.902 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.046 5.069 -26.285 28.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.043 4.043 3 C -0.202 4.202 4 C -0.110 4.110 5 C -0.201 4.201 6 C -0.170 4.170 7 C 0.388 3.612 8 O -0.412 6.412 9 N -0.338 5.338 10 C 0.024 3.976 11 H 0.114 0.886 12 C -0.216 4.216 13 C 0.079 3.921 14 H 0.092 0.908 15 N -0.347 5.347 16 C -0.372 4.372 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.580 5.580 20 Si 0.737 3.263 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.121 4.121 25 C -0.163 4.163 26 C -0.169 4.169 27 C -0.148 4.148 28 N -0.095 5.095 29 N -0.070 5.070 30 C -0.056 4.056 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.177 0.823 39 H 0.241 0.759 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.223 0.777 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.108 0.892 47 H 0.075 0.925 48 H 0.098 0.902 49 H 0.093 0.907 50 H 0.103 0.897 51 H 0.117 0.883 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.446 4.740 -25.885 28.312 hybrid contribution 0.647 0.451 0.151 0.803 sum -9.799 5.191 -25.733 28.021 Atomic orbital electron populations 1.21831 0.93013 1.02612 1.02680 1.19665 0.96802 0.95435 0.92386 1.21855 1.01094 0.94547 1.02744 1.21343 0.91077 1.00395 0.98179 1.21442 1.03050 1.04594 0.91063 1.21941 0.95687 1.04087 0.95321 1.16858 0.82404 0.78579 0.83375 1.90777 1.30696 1.52455 1.67296 1.45456 1.27836 1.49691 1.10847 1.21739 0.99728 0.96758 0.79352 0.88633 1.24267 0.98701 0.99591 0.99032 1.21308 0.89551 0.90641 0.90576 0.90796 1.42394 1.11142 1.66104 1.15102 1.19275 0.88227 1.29213 1.00472 0.91232 1.24733 0.98247 1.00987 0.96866 1.69651 1.36248 1.44185 1.07896 0.86212 0.84928 0.77637 0.77535 1.21755 1.21822 1.20831 1.23547 0.98950 0.91850 0.97769 1.22641 1.01065 0.96302 0.96332 1.22744 1.01522 0.96068 0.96531 1.22462 0.98556 0.94945 0.98803 1.73560 1.23484 1.21061 0.91443 1.45282 1.19243 1.34714 1.07711 1.22156 0.92932 1.04452 0.86049 0.91638 0.91786 0.92154 0.90268 0.91743 0.92696 0.91702 0.82256 0.75907 0.92307 0.89514 0.77687 0.93499 0.90932 0.91731 0.89228 0.92490 0.90227 0.90708 0.89690 0.88345 0.88834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 8.78 37.16 0.33 -0.45 16 2 C -0.02 -0.13 3.09 -91.77 -0.28 -0.42 16 3 C -0.14 -0.78 9.18 37.16 0.34 -0.44 16 4 C 0.01 0.13 5.84 -82.21 -0.48 -0.35 16 5 C -0.17 -2.09 9.96 -39.36 -0.39 -2.49 16 6 C -0.01 -0.15 7.13 -82.77 -0.59 -0.74 16 7 C 0.60 9.90 7.83 -12.39 -0.10 9.80 16 8 O -0.54 -10.25 16.57 5.31 0.09 -10.17 16 9 N -0.69 -10.65 5.07 -54.35 -0.28 -10.93 16 10 C 0.13 2.16 4.08 -67.48 -0.28 1.89 16 11 H 0.10 1.66 7.55 -51.93 -0.39 1.27 16 12 C -0.17 -3.28 7.68 -25.75 -0.20 -3.48 16 13 C 0.19 3.83 4.29 -67.40 -0.29 3.54 16 14 H 0.07 1.49 8.12 -51.93 -0.42 1.07 16 15 N -0.71 -17.44 5.35 -52.91 -0.28 -17.73 16 16 C -0.24 -6.63 9.98 -15.06 -0.15 -6.78 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -27.87 13.06 55.49 0.72 -27.15 16 20 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 C -0.12 -1.99 0.92 -154.63 -0.14 -2.13 16 25 C -0.13 -1.90 7.43 -26.28 -0.20 -2.09 16 26 C -0.13 -2.09 8.08 -25.75 -0.21 -2.30 16 27 C -0.11 -1.82 7.45 -26.28 -0.20 -2.01 16 28 N -0.26 -3.35 11.67 33.42 0.39 -2.96 16 29 N -0.28 -2.75 3.70 -63.85 -0.24 -2.99 16 30 C 0.08 0.43 11.11 59.85 0.66 1.09 16 31 H 0.06 0.39 7.35 -51.93 -0.38 0.01 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.33 6.86 -51.93 -0.36 -0.03 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.16 1.80 7.47 -52.48 -0.39 1.41 16 39 H 0.41 5.86 8.27 -40.82 -0.34 5.52 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 42 H 0.39 10.03 5.86 -40.82 -0.24 9.79 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 47 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.08 1.50 6.42 -51.93 -0.33 1.16 16 49 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 51 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 52 H 0.09 0.23 6.87 -51.93 -0.36 -0.13 16 LS Contribution 419.51 15.07 6.32 6.32 Total: -1.00 -33.40 419.51 -9.23 -42.63 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -8.68 Total: 13.35 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -2.26 Total: -7.80 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: 0.32 Total: -61.74 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.40 -9.23 -42.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078621483.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.703 kcal (2) G-P(sol) polarization free energy of solvation -33.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds