Wall clock time and date at job start Wed Apr 1 2020 05:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46959 * 2 1 4 4 C 1.50696 * 109.47529 * 120.00385 * 2 1 3 5 5 C 1.35369 * 126.38324 * 325.02365 * 4 2 1 6 6 C 1.41497 * 105.50170 * 179.97438 * 5 4 2 7 7 C 1.47716 * 126.51666 * 179.97438 * 6 5 4 8 8 O 1.21567 * 119.99921 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00131 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00198 * 180.02562 * 9 7 6 11 11 H 1.09000 * 112.94972 * 26.90123 * 10 9 7 12 12 C 1.53952 * 113.66105 * 255.49637 * 10 9 7 13 13 C 1.53950 * 87.37851 * 270.21915 * 12 10 9 14 14 H 1.09006 * 113.66206 * 89.78396 * 13 12 10 15 15 N 1.46500 * 113.66037 * 220.83072 * 13 12 10 16 16 C 1.36936 * 120.00465 * 255.49663 * 15 13 12 17 17 H 1.08000 * 119.99881 * 0.02562 * 16 15 13 18 18 C 1.38807 * 120.00046 * 180.02562 * 16 15 13 19 19 N 1.31621 * 120.00482 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 120.00009 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47186 * 89.99509 * 20 18 16 22 22 H 1.48501 * 109.47206 * 210.00033 * 20 18 16 23 23 H 1.48505 * 109.46648 * 329.99336 * 20 18 16 24 24 C 1.52909 * 113.66062 * 158.31111 * 10 9 7 25 25 C 1.52907 * 121.13536 * 323.85110 * 24 10 9 26 26 C 1.53958 * 86.78205 * 209.38733 * 25 24 10 27 27 C 1.52915 * 121.13447 * 215.29263 * 24 10 9 28 28 N 1.31801 * 106.96441 * 0.26467 * 6 5 4 29 29 N 1.28469 * 110.07353 * 359.55315 * 28 6 5 30 30 C 1.46498 * 124.88318 * 180.15995 * 29 28 6 31 31 H 1.09002 * 109.47010 * 299.99803 * 1 2 3 32 32 H 1.08997 * 109.47376 * 59.99419 * 1 2 3 33 33 H 1.09000 * 109.47431 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46704 * 240.00916 * 2 1 3 35 35 H 1.09002 * 109.47099 * 60.00252 * 3 2 1 36 36 H 1.09003 * 109.47085 * 179.97438 * 3 2 1 37 37 H 1.08997 * 109.47551 * 300.00474 * 3 2 1 38 38 H 1.08003 * 127.24483 * 359.97438 * 5 4 2 39 39 H 0.97008 * 119.99530 * 0.02562 * 9 7 6 40 40 H 1.09002 * 113.58142 * 24.86467 * 12 10 9 41 41 H 1.09004 * 113.57653 * 155.58067 * 12 10 9 42 42 H 0.96999 * 120.00029 * 75.50463 * 15 13 12 43 43 H 0.96993 * 120.00234 * 180.02562 * 19 18 16 44 44 H 1.08994 * 113.66316 * 323.85618 * 25 24 10 45 45 H 1.08997 * 113.66044 * 94.91866 * 25 24 10 46 46 H 1.09000 * 113.57861 * 270.13288 * 26 25 24 47 47 H 1.08990 * 113.65166 * 139.34938 * 26 25 24 48 48 H 1.09004 * 113.66330 * 265.09006 * 27 24 10 49 49 H 1.09001 * 113.65876 * 36.13855 * 27 24 10 50 50 H 1.09004 * 109.47448 * 270.34024 * 30 29 28 51 51 H 1.08999 * 109.47515 * 30.34207 * 30 29 28 52 52 H 1.09000 * 109.46884 * 150.34603 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 6 1.4583 -0.6969 2.4562 6 6 2.2883 -1.5021 3.2715 7 6 2.0885 -1.8022 4.7040 8 8 1.1322 -1.3389 5.2944 9 7 2.9665 -2.5896 5.3564 10 6 2.7681 -2.8876 6.7769 11 1 1.7217 -2.8410 7.0789 12 6 3.7154 -2.1110 7.7094 13 6 4.7028 -3.2835 7.5666 14 1 5.3952 -3.1732 6.7320 15 7 5.3710 -3.6452 8.8191 16 6 6.6769 -3.2888 9.0263 17 1 7.2140 -2.7406 8.2665 18 6 7.3101 -3.6321 10.2129 19 7 6.6554 -4.2997 11.1391 20 14 9.0913 -3.1452 10.4958 21 1 9.1426 -1.8102 11.1440 22 1 9.7449 -4.1479 11.3748 23 1 9.8024 -3.0907 9.1932 24 6 3.4859 -4.1543 7.2443 25 6 3.6061 -5.3766 6.3336 26 6 3.6202 -6.2245 7.6185 27 6 2.8675 -5.0688 8.3024 28 7 3.2771 -1.9284 2.5113 29 7 3.1389 -1.4797 1.3155 30 6 4.0540 -1.7569 0.2056 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5137 -0.8901 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6766 1.9564 -0.8899 38 1 0.5565 -0.1802 2.7499 39 1 3.7298 -2.9589 4.8853 40 1 4.0813 -1.1781 7.2806 41 1 3.3277 -1.9881 8.7208 42 1 4.8885 -4.1374 9.5017 43 1 7.0978 -4.5392 11.9684 44 1 2.7292 -5.5443 5.7084 45 1 4.5407 -5.4149 5.7739 46 1 4.6198 -6.3916 8.0197 47 1 3.0360 -7.1415 7.5437 48 1 3.2120 -4.8611 9.3155 49 1 1.7829 -5.1499 8.2306 50 1 4.8367 -0.9986 0.1818 51 1 4.5047 -2.7399 0.3431 52 1 3.5017 -1.7386 -0.7339 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078621483.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:15 Heat of formation + Delta-G solvation = 70.101280 kcal Electronic energy + Delta-G solvation = -30739.609195 eV Core-core repulsion = 26741.520897 eV Total energy + Delta-G solvation = -3998.088298 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.74792 -41.90359 -39.94633 -36.70418 -36.38001 -35.78128 -34.51300 -33.70512 -31.75003 -30.60324 -28.49768 -28.01336 -26.72851 -26.54382 -25.54821 -24.74052 -23.66754 -23.30540 -21.76433 -21.31778 -20.44319 -19.63021 -18.88047 -18.15739 -17.62521 -17.34865 -17.08773 -16.71218 -16.37315 -15.87740 -15.80837 -15.50514 -15.36986 -15.10754 -14.78909 -14.65990 -14.19148 -13.97636 -13.92969 -13.59060 -13.43032 -13.37909 -13.31795 -13.18208 -12.98754 -12.87602 -12.79130 -12.60394 -12.49556 -12.17266 -12.10256 -11.94202 -11.86902 -11.76311 -11.75406 -11.40652 -11.30084 -11.05202 -10.92345 -10.69653 -10.20322 -9.93290 -9.88000 -8.96046 -7.93584 -5.21155 0.49982 1.10614 1.46319 1.47848 1.54080 1.55878 2.09013 2.33608 2.56049 3.28634 3.36700 3.45488 3.51070 3.67098 3.74870 3.86532 3.91324 4.00108 4.05506 4.11207 4.19411 4.25083 4.33070 4.40268 4.49165 4.55474 4.60518 4.64080 4.68467 4.71774 4.74573 4.83771 4.84836 4.88126 4.99011 5.00431 5.02296 5.06473 5.12257 5.16049 5.17063 5.23901 5.32414 5.38724 5.44385 5.48517 5.57076 5.61450 5.65139 5.85674 6.28428 6.44409 6.89633 7.14861 7.35512 8.11709 8.36631 9.29413 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014657 B = 0.002380 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.901776 B =11763.250593 C =12545.299904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.020 4.020 3 C -0.143 4.143 4 C 0.031 3.969 5 C -0.196 4.196 6 C -0.041 4.041 7 C 0.603 3.397 8 O -0.572 6.572 9 N -0.682 5.682 10 C 0.147 3.853 11 H 0.093 0.907 12 C -0.172 4.172 13 C 0.181 3.819 14 H 0.074 0.926 15 N -0.719 5.719 16 C -0.241 4.241 17 H 0.073 0.927 18 C -0.073 4.073 19 N -0.967 5.967 20 Si 0.969 3.031 21 H -0.291 1.291 22 H -0.295 1.295 23 H -0.270 1.270 24 C -0.110 4.110 25 C -0.111 4.111 26 C -0.128 4.128 27 C -0.110 4.110 28 N -0.273 5.273 29 N -0.274 5.274 30 C 0.070 3.930 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.054 0.946 34 H 0.108 0.892 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.157 0.843 39 H 0.412 0.588 40 H 0.052 0.948 41 H 0.072 0.928 42 H 0.378 0.622 43 H 0.250 0.750 44 H 0.095 0.905 45 H 0.066 0.934 46 H 0.058 0.942 47 H 0.083 0.917 48 H 0.051 0.949 49 H 0.100 0.900 50 H 0.100 0.900 51 H 0.103 0.897 52 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.047 5.192 -30.101 32.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.039 4.039 3 C -0.201 4.201 4 C -0.094 4.094 5 C -0.224 4.224 6 C -0.199 4.199 7 C 0.389 3.611 8 O -0.450 6.450 9 N -0.331 5.331 10 C 0.041 3.959 11 H 0.111 0.889 12 C -0.214 4.214 13 C 0.070 3.930 14 H 0.092 0.908 15 N -0.357 5.357 16 C -0.373 4.373 17 H 0.091 0.909 18 C -0.266 4.266 19 N -0.617 5.617 20 Si 0.799 3.201 21 H -0.218 1.218 22 H -0.222 1.222 23 H -0.195 1.195 24 C -0.112 4.112 25 C -0.148 4.148 26 C -0.165 4.165 27 C -0.148 4.148 28 N -0.110 5.110 29 N -0.062 5.062 30 C -0.068 4.068 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.126 0.874 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.174 0.826 39 H 0.248 0.752 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.213 0.787 43 H 0.059 0.941 44 H 0.114 0.886 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.101 0.899 48 H 0.070 0.930 49 H 0.118 0.882 50 H 0.118 0.882 51 H 0.122 0.878 52 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.437 4.870 -29.764 31.915 hybrid contribution 0.628 0.476 1.192 1.429 sum -9.809 5.346 -28.572 30.678 Atomic orbital electron populations 1.21845 0.92739 1.02418 1.03180 1.19850 0.96967 0.95567 0.91553 1.21850 1.01100 0.94091 1.03037 1.21825 0.90074 0.99057 0.98479 1.21576 1.03487 1.05249 0.92138 1.21688 0.97455 1.06266 0.94526 1.17189 0.81729 0.77788 0.84353 1.90744 1.32071 1.53753 1.68385 1.45354 1.27996 1.49614 1.10119 1.21466 0.98923 0.95776 0.79757 0.88869 1.24139 0.99100 0.99108 0.99035 1.21519 0.90350 0.92287 0.88817 0.90846 1.42514 1.10533 1.66198 1.16484 1.19634 0.89389 1.28008 1.00277 0.90924 1.25500 1.02178 1.01905 0.96973 1.69805 1.37706 1.45964 1.08234 0.85200 0.80476 0.76825 0.77617 1.21800 1.22188 1.19486 1.23332 0.96764 0.92371 0.98761 1.22610 1.02196 0.94132 0.95907 1.22646 1.00100 0.97162 0.96609 1.22520 1.00043 0.95147 0.97097 1.73489 1.23203 1.21671 0.92682 1.45775 1.19538 1.33350 1.07559 1.22642 0.93208 1.05281 0.85669 0.92809 0.89686 0.92703 0.87396 0.93359 0.92662 0.89565 0.82551 0.75157 0.92897 0.90889 0.78715 0.94073 0.88647 0.91508 0.92310 0.89880 0.93037 0.88213 0.88204 0.87840 0.85513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.78 71.98 0.63 -0.60 16 2 C -0.02 -0.17 3.09 -11.54 -0.04 -0.20 16 3 C -0.14 -1.14 9.18 71.98 0.66 -0.48 16 4 C 0.03 0.52 5.84 41.40 0.24 0.76 16 5 C -0.20 -4.70 9.96 22.41 0.22 -4.48 16 6 C -0.04 -1.17 7.13 42.46 0.30 -0.87 16 7 C 0.60 20.02 7.83 86.75 0.68 20.70 16 8 O -0.57 -22.38 16.57 -3.93 -0.07 -22.44 16 9 N -0.68 -20.95 5.07 -444.15 -2.25 -23.20 16 10 C 0.15 4.90 4.08 45.28 0.18 5.08 16 11 H 0.09 3.24 7.55 -2.39 -0.02 3.22 16 12 C -0.17 -6.66 7.68 31.23 0.24 -6.42 16 13 C 0.18 7.34 4.29 45.33 0.19 7.53 16 14 H 0.07 2.98 8.12 -2.38 -0.02 2.96 16 15 N -0.72 -36.41 5.35 -321.32 -1.72 -38.13 16 16 C -0.24 -13.50 9.98 84.03 0.84 -12.66 16 17 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 18 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 19 N -0.97 -59.41 13.06 21.65 0.28 -59.13 16 20 Si 0.97 46.74 29.55 68.60 2.03 48.77 16 21 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 22 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 24 C -0.11 -3.66 0.92 -52.26 -0.05 -3.71 16 25 C -0.11 -3.16 7.43 30.89 0.23 -2.93 16 26 C -0.13 -3.96 8.08 31.23 0.25 -3.70 16 27 C -0.11 -3.62 7.45 30.89 0.23 -3.39 16 28 N -0.27 -6.73 11.67 -48.18 -0.56 -7.30 16 29 N -0.27 -4.74 3.70 -355.93 -1.32 -6.06 16 30 C 0.07 0.47 11.11 127.77 1.42 1.89 16 31 H 0.05 0.59 7.35 -2.39 -0.02 0.57 16 32 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.11 0.37 6.86 -2.39 -0.02 0.35 16 35 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.16 3.66 7.47 -2.91 -0.02 3.64 16 39 H 0.41 11.66 8.27 -92.70 -0.77 10.89 16 40 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.07 3.03 8.14 -2.38 -0.02 3.01 16 42 H 0.38 20.42 5.86 -92.71 -0.54 19.87 16 43 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 44 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 48 H 0.05 2.00 6.42 -2.38 -0.02 1.98 16 49 H 0.10 2.78 8.14 -2.39 -0.02 2.77 16 50 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 51 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 52 H 0.13 0.01 6.87 -2.39 -0.02 -0.01 16 Total: -1.00 -74.70 419.51 2.72 -71.98 By element: Atomic # 1 Polarization: 43.13 SS G_CDS: -0.38 Total: 42.75 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 6.71 Total: -7.25 kcal Atomic # 7 Polarization: -128.24 SS G_CDS: -5.57 Total: -133.80 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.07 Total: -22.44 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -74.70 2.72 -71.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078621483.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.078 kcal (2) G-P(sol) polarization free energy of solvation -74.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds