Wall clock time and date at job start Wed Apr 1 2020 05:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47249 * 2 1 4 4 C 1.50697 * 109.46753 * 120.00287 * 2 1 3 5 5 C 1.35363 * 126.38692 * 325.31432 * 4 2 1 6 6 C 1.41500 * 105.49884 * 180.08873 * 5 4 2 7 7 C 1.47715 * 126.51796 * 179.90374 * 6 5 4 8 8 O 1.21578 * 119.99936 * 359.71355 * 7 6 5 9 9 N 1.34777 * 120.00480 * 179.71615 * 7 6 5 10 10 C 1.46497 * 119.99995 * 180.02562 * 9 7 6 11 11 H 1.09001 * 112.95010 * 23.58981 * 10 9 7 12 12 C 1.53955 * 113.66165 * 252.18590 * 10 9 7 13 13 C 1.53957 * 87.29400 * 220.79907 * 12 10 9 14 14 H 1.09002 * 113.65635 * 270.26077 * 13 12 10 15 15 N 1.46493 * 113.66200 * 139.20574 * 13 12 10 16 16 C 1.36935 * 119.99854 * 107.81212 * 15 13 12 17 17 H 1.07998 * 120.00548 * 0.02562 * 16 15 13 18 18 C 1.38815 * 119.99685 * 179.97438 * 16 15 13 19 19 N 1.31618 * 120.00127 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99751 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47195 * 60.00176 * 20 18 16 22 22 H 1.48509 * 109.47217 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47354 * 299.99723 * 20 18 16 24 24 C 1.52904 * 86.78379 * 24.73199 * 13 12 10 25 25 C 1.52910 * 121.13510 * 209.38616 * 24 13 12 26 26 C 1.53957 * 86.78122 * 209.38051 * 25 24 13 27 27 C 1.52909 * 121.13701 * 100.82200 * 24 13 12 28 28 N 1.31812 * 106.96931 * 359.64601 * 6 5 4 29 29 N 1.28467 * 110.06810 * 0.22297 * 28 6 5 30 30 C 1.46495 * 124.88343 * 180.02562 * 29 28 6 31 31 H 1.08994 * 109.47041 * 300.00219 * 1 2 3 32 32 H 1.09008 * 109.46987 * 59.99965 * 1 2 3 33 33 H 1.09000 * 109.47256 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46876 * 240.00401 * 2 1 3 35 35 H 1.08999 * 109.47454 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.47274 * 300.00415 * 3 2 1 37 37 H 1.09004 * 109.47135 * 59.99924 * 3 2 1 38 38 H 1.07996 * 127.24714 * 359.97438 * 5 4 2 39 39 H 0.97000 * 119.99275 * 0.02562 * 9 7 6 40 40 H 1.08997 * 113.57526 * 335.39851 * 12 10 9 41 41 H 1.08998 * 113.58201 * 106.19706 * 12 10 9 42 42 H 0.97002 * 120.00012 * 287.81346 * 15 13 12 43 43 H 0.97007 * 119.99662 * 179.97438 * 19 18 16 44 44 H 1.09003 * 113.66688 * 94.91189 * 25 24 13 45 45 H 1.08997 * 113.66384 * 323.85427 * 25 24 13 46 46 H 1.08998 * 113.57948 * 139.33169 * 26 25 24 47 47 H 1.09000 * 113.57875 * 270.12813 * 26 25 24 48 48 H 1.08993 * 113.65927 * 36.14497 * 27 24 13 49 49 H 1.08999 * 113.66533 * 265.08675 * 27 24 13 50 50 H 1.09002 * 109.47232 * 89.97466 * 30 29 28 51 51 H 1.08995 * 109.47718 * 209.97277 * 30 29 28 52 52 H 1.08997 * 109.47127 * 329.97945 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.4551 -0.7014 2.4548 6 6 2.2879 -1.5024 3.2714 7 6 2.0873 -1.8038 4.7035 8 8 1.1305 -1.3409 5.2939 9 7 2.9648 -2.5918 5.3558 10 6 2.7654 -2.8910 6.7760 11 1 1.7267 -2.7886 7.0901 12 6 3.7649 -2.1771 7.7041 13 6 3.8419 -3.4875 8.5086 14 1 3.1057 -3.5527 9.3098 15 7 5.1969 -3.8284 8.9488 16 6 5.5377 -3.7106 10.2698 17 1 4.8074 -3.3666 10.9873 18 6 6.8215 -4.0342 10.6869 19 7 7.7111 -4.4548 9.8127 20 14 7.2866 -3.8727 12.4889 21 1 6.4117 -4.7509 13.3065 22 1 8.7040 -4.2761 12.6724 23 1 7.1142 -2.4622 12.9202 24 6 3.4161 -4.2001 7.2245 25 6 2.6188 -5.5040 7.2711 26 6 3.2936 -5.8629 5.9346 27 6 4.4384 -4.9178 6.3424 28 7 3.2738 -1.9332 2.5099 29 7 3.1389 -1.4796 1.3156 30 6 4.0537 -1.7574 0.2056 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9564 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 0.5505 -0.1889 2.7472 39 1 3.7283 -2.9607 4.8848 40 1 4.7013 -1.9108 7.2140 41 1 3.3275 -1.3485 8.2611 42 1 5.8527 -4.1377 8.3044 43 1 8.6083 -4.6805 10.1042 44 1 1.5411 -5.3609 7.1924 45 1 2.9014 -6.1605 8.0940 46 1 3.5949 -6.9081 5.8651 47 1 2.7380 -5.5230 5.0605 48 1 5.2324 -5.4094 6.9044 49 1 4.8141 -4.3064 5.5220 50 1 3.7248 -2.6535 -0.3207 51 1 4.0569 -0.9124 -0.4829 52 1 5.0599 -1.9132 0.5944 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078621484.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:20 Heat of formation + Delta-G solvation = 90.090538 kcal Electronic energy + Delta-G solvation = -30756.861539 eV Core-core repulsion = 26759.640040 eV Total energy + Delta-G solvation = -3997.221499 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.90515 -40.50263 -38.57417 -36.16864 -34.83481 -34.01955 -33.68581 -32.36155 -29.99192 -29.67989 -27.74900 -27.61532 -25.44143 -24.84551 -24.11060 -23.45108 -22.89302 -21.61857 -20.50181 -20.31448 -19.54842 -18.04570 -17.42349 -17.03745 -16.54743 -16.41916 -15.93531 -15.13664 -15.02851 -14.78485 -14.47456 -14.39384 -14.25612 -14.11188 -13.75537 -13.49506 -13.04960 -12.96451 -12.94835 -12.75975 -12.58613 -12.38689 -12.05356 -12.00835 -11.78026 -11.66942 -11.42799 -11.33852 -11.24855 -10.95200 -10.91077 -10.74957 -10.67369 -10.19824 -10.07882 -10.00828 -9.82116 -9.58700 -9.37681 -9.27636 -9.11131 -8.77358 -8.57237 -6.91902 -5.76119 -3.03922 1.51419 1.96063 2.22624 3.35962 3.45748 3.50220 3.51205 3.52121 4.03844 4.14164 4.39768 4.60795 4.61810 4.69091 4.73653 4.83378 4.86866 4.98834 4.99579 5.10199 5.14523 5.21063 5.23680 5.31437 5.32798 5.38537 5.41892 5.50672 5.57829 5.63210 5.71256 5.77743 5.91101 5.93921 5.97676 6.07399 6.08904 6.21205 6.23468 6.26863 6.33218 6.40240 6.47053 6.54381 6.67976 6.68536 6.85462 6.99430 7.14830 7.62569 7.72721 7.89490 8.39892 8.43022 9.54334 10.12332 10.47426 11.46285 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018070 B = 0.002212 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.188192 B =12654.817835 C =12771.372676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.023 4.023 3 C -0.145 4.145 4 C 0.014 3.986 5 C -0.174 4.174 6 C -0.011 4.011 7 C 0.602 3.398 8 O -0.539 6.539 9 N -0.697 5.697 10 C 0.144 3.856 11 H 0.113 0.887 12 C -0.174 4.174 13 C 0.182 3.818 14 H 0.081 0.919 15 N -0.706 5.706 16 C -0.241 4.241 17 H 0.071 0.929 18 C -0.013 4.013 19 N -0.934 5.934 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.286 1.286 24 C -0.124 4.124 25 C -0.121 4.121 26 C -0.140 4.140 27 C -0.108 4.108 28 N -0.260 5.260 29 N -0.282 5.282 30 C 0.084 3.916 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.160 0.840 39 H 0.405 0.595 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.386 0.614 43 H 0.255 0.745 44 H 0.060 0.940 45 H 0.086 0.914 46 H 0.061 0.939 47 H 0.071 0.929 48 H 0.097 0.903 49 H 0.057 0.943 50 H 0.084 0.916 51 H 0.093 0.907 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.917 6.062 -25.251 28.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.043 4.043 3 C -0.203 4.203 4 C -0.110 4.110 5 C -0.201 4.201 6 C -0.172 4.172 7 C 0.386 3.614 8 O -0.415 6.415 9 N -0.348 5.348 10 C 0.039 3.961 11 H 0.130 0.870 12 C -0.217 4.217 13 C 0.069 3.931 14 H 0.099 0.901 15 N -0.344 5.344 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.209 4.209 19 N -0.582 5.582 20 Si 0.738 3.262 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.213 1.213 24 C -0.126 4.126 25 C -0.159 4.159 26 C -0.177 4.177 27 C -0.146 4.146 28 N -0.096 5.096 29 N -0.070 5.070 30 C -0.056 4.056 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.177 0.823 39 H 0.242 0.758 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.221 0.779 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.104 0.896 46 H 0.080 0.920 47 H 0.089 0.911 48 H 0.116 0.884 49 H 0.076 0.924 50 H 0.103 0.897 51 H 0.112 0.888 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.473 5.694 -24.668 27.795 hybrid contribution 0.394 0.308 0.394 0.636 sum -11.079 6.002 -24.274 27.349 Atomic orbital electron populations 1.21826 0.92986 1.02610 1.02667 1.19661 0.96840 0.95404 0.92423 1.21865 1.01052 0.94599 1.02775 1.21346 0.90977 1.00474 0.98189 1.21442 1.02886 1.04735 0.91084 1.21988 0.95795 1.04001 0.95367 1.16923 0.82449 0.78664 0.83393 1.90772 1.30720 1.52680 1.67308 1.45890 1.27777 1.49535 1.11560 1.22217 1.00085 0.95216 0.78594 0.86951 1.24298 0.98427 1.00459 0.98470 1.21148 0.89106 0.91115 0.91753 0.90129 1.42309 1.07242 1.77843 1.07009 1.19273 0.95639 1.37147 0.85150 0.91100 1.24742 0.96402 1.02084 0.97682 1.69648 1.04500 1.51207 1.32819 0.86269 0.77199 0.77771 0.84950 1.21262 1.21779 1.21276 1.23476 0.97467 0.92703 0.98990 1.22675 0.98427 0.97148 0.97633 1.22829 0.98117 0.99259 0.97502 1.22442 0.96643 0.97349 0.98137 1.73560 1.23751 1.20793 0.91478 1.45285 1.19331 1.34574 1.07781 1.22155 0.93881 1.03224 0.86360 0.91648 0.91783 0.92157 0.90242 0.92721 0.91691 0.91716 0.82269 0.75819 0.90203 0.92043 0.77869 0.93484 0.92105 0.89575 0.91974 0.91068 0.88425 0.92448 0.89730 0.88835 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 8.78 37.16 0.33 -0.46 16 2 C -0.02 -0.14 2.89 -91.77 -0.27 -0.40 16 3 C -0.15 -0.78 9.18 37.16 0.34 -0.43 16 4 C 0.01 0.13 5.84 -82.21 -0.48 -0.35 16 5 C -0.17 -2.11 9.95 -39.37 -0.39 -2.50 16 6 C -0.01 -0.16 7.13 -82.76 -0.59 -0.75 16 7 C 0.60 9.88 7.83 -12.39 -0.10 9.79 16 8 O -0.54 -10.23 16.53 5.30 0.09 -10.15 16 9 N -0.70 -10.81 5.27 -54.35 -0.29 -11.10 16 10 C 0.14 2.37 4.12 -67.48 -0.28 2.09 16 11 H 0.11 1.91 7.46 -51.93 -0.39 1.52 16 12 C -0.17 -3.25 7.68 -25.74 -0.20 -3.45 16 13 C 0.18 3.65 4.36 -67.48 -0.29 3.35 16 14 H 0.08 1.62 8.10 -51.93 -0.42 1.20 16 15 N -0.71 -17.43 5.30 -52.99 -0.28 -17.71 16 16 C -0.24 -6.65 9.97 -15.06 -0.15 -6.80 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -27.94 13.06 55.49 0.72 -27.22 16 20 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 C -0.12 -2.07 1.06 -154.71 -0.16 -2.23 16 25 C -0.12 -1.86 7.84 -26.28 -0.21 -2.06 16 26 C -0.14 -1.98 8.08 -25.74 -0.21 -2.19 16 27 C -0.11 -1.75 6.78 -26.28 -0.18 -1.93 16 28 N -0.26 -3.39 11.67 33.42 0.39 -3.00 16 29 N -0.28 -2.79 3.70 -63.86 -0.24 -3.02 16 30 C 0.08 0.44 10.89 59.84 0.65 1.09 16 31 H 0.06 0.39 7.35 -51.93 -0.38 0.01 16 32 H 0.06 0.25 8.14 -51.92 -0.42 -0.17 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.34 7.42 -51.93 -0.39 -0.04 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.16 1.81 7.46 -52.49 -0.39 1.41 16 39 H 0.41 5.96 6.45 -40.82 -0.26 5.70 16 40 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.39 10.02 6.23 -40.82 -0.25 9.76 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 46 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.10 1.82 7.03 -51.93 -0.36 1.45 16 49 H 0.06 0.87 6.42 -51.93 -0.33 0.54 16 50 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 51 H 0.09 0.26 7.45 -51.93 -0.39 -0.13 16 52 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 417.64 15.07 6.29 6.29 Total: -1.00 -33.32 417.64 -9.22 -42.55 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -8.61 Total: 13.63 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -2.28 Total: -7.70 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: 0.31 Total: -62.05 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.32 -9.22 -42.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078621484.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.636 kcal (2) G-P(sol) polarization free energy of solvation -33.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds