Wall clock time and date at job start Wed Apr 1 2020 05:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47249 * 2 1 4 4 C 1.50697 * 109.46753 * 120.00287 * 2 1 3 5 5 C 1.35363 * 126.38692 * 325.31432 * 4 2 1 6 6 C 1.41500 * 105.49884 * 180.08873 * 5 4 2 7 7 C 1.47715 * 126.51796 * 179.90374 * 6 5 4 8 8 O 1.21578 * 119.99936 * 359.71355 * 7 6 5 9 9 N 1.34777 * 120.00480 * 179.71615 * 7 6 5 10 10 C 1.46497 * 119.99995 * 180.02562 * 9 7 6 11 11 H 1.09001 * 112.95010 * 23.58981 * 10 9 7 12 12 C 1.53955 * 113.66165 * 252.18590 * 10 9 7 13 13 C 1.53957 * 87.29400 * 220.79907 * 12 10 9 14 14 H 1.09002 * 113.65635 * 270.26077 * 13 12 10 15 15 N 1.46493 * 113.66200 * 139.20574 * 13 12 10 16 16 C 1.36935 * 119.99854 * 107.81212 * 15 13 12 17 17 H 1.07998 * 120.00548 * 0.02562 * 16 15 13 18 18 C 1.38815 * 119.99685 * 179.97438 * 16 15 13 19 19 N 1.31618 * 120.00127 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99751 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47195 * 60.00176 * 20 18 16 22 22 H 1.48509 * 109.47217 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47354 * 299.99723 * 20 18 16 24 24 C 1.52904 * 86.78379 * 24.73199 * 13 12 10 25 25 C 1.52910 * 121.13510 * 209.38616 * 24 13 12 26 26 C 1.53957 * 86.78122 * 209.38051 * 25 24 13 27 27 C 1.52909 * 121.13701 * 100.82200 * 24 13 12 28 28 N 1.31812 * 106.96931 * 359.64601 * 6 5 4 29 29 N 1.28467 * 110.06810 * 0.22297 * 28 6 5 30 30 C 1.46495 * 124.88343 * 180.02562 * 29 28 6 31 31 H 1.08994 * 109.47041 * 300.00219 * 1 2 3 32 32 H 1.09008 * 109.46987 * 59.99965 * 1 2 3 33 33 H 1.09000 * 109.47256 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46876 * 240.00401 * 2 1 3 35 35 H 1.08999 * 109.47454 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.47274 * 300.00415 * 3 2 1 37 37 H 1.09004 * 109.47135 * 59.99924 * 3 2 1 38 38 H 1.07996 * 127.24714 * 359.97438 * 5 4 2 39 39 H 0.97000 * 119.99275 * 0.02562 * 9 7 6 40 40 H 1.08997 * 113.57526 * 335.39851 * 12 10 9 41 41 H 1.08998 * 113.58201 * 106.19706 * 12 10 9 42 42 H 0.97002 * 120.00012 * 287.81346 * 15 13 12 43 43 H 0.97007 * 119.99662 * 179.97438 * 19 18 16 44 44 H 1.09003 * 113.66688 * 94.91189 * 25 24 13 45 45 H 1.08997 * 113.66384 * 323.85427 * 25 24 13 46 46 H 1.08998 * 113.57948 * 139.33169 * 26 25 24 47 47 H 1.09000 * 113.57875 * 270.12813 * 26 25 24 48 48 H 1.08993 * 113.65927 * 36.14497 * 27 24 13 49 49 H 1.08999 * 113.66533 * 265.08675 * 27 24 13 50 50 H 1.09002 * 109.47232 * 89.97466 * 30 29 28 51 51 H 1.08995 * 109.47718 * 209.97277 * 30 29 28 52 52 H 1.08997 * 109.47127 * 329.97945 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.4551 -0.7014 2.4548 6 6 2.2879 -1.5024 3.2714 7 6 2.0873 -1.8038 4.7035 8 8 1.1305 -1.3409 5.2939 9 7 2.9648 -2.5918 5.3558 10 6 2.7654 -2.8910 6.7760 11 1 1.7267 -2.7886 7.0901 12 6 3.7649 -2.1771 7.7041 13 6 3.8419 -3.4875 8.5086 14 1 3.1057 -3.5527 9.3098 15 7 5.1969 -3.8284 8.9488 16 6 5.5377 -3.7106 10.2698 17 1 4.8074 -3.3666 10.9873 18 6 6.8215 -4.0342 10.6869 19 7 7.7111 -4.4548 9.8127 20 14 7.2866 -3.8727 12.4889 21 1 6.4117 -4.7509 13.3065 22 1 8.7040 -4.2761 12.6724 23 1 7.1142 -2.4622 12.9202 24 6 3.4161 -4.2001 7.2245 25 6 2.6188 -5.5040 7.2711 26 6 3.2936 -5.8629 5.9346 27 6 4.4384 -4.9178 6.3424 28 7 3.2738 -1.9332 2.5099 29 7 3.1389 -1.4796 1.3156 30 6 4.0537 -1.7574 0.2056 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9564 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 0.5505 -0.1889 2.7472 39 1 3.7283 -2.9607 4.8848 40 1 4.7013 -1.9108 7.2140 41 1 3.3275 -1.3485 8.2611 42 1 5.8527 -4.1377 8.3044 43 1 8.6083 -4.6805 10.1042 44 1 1.5411 -5.3609 7.1924 45 1 2.9014 -6.1605 8.0940 46 1 3.5949 -6.9081 5.8651 47 1 2.7380 -5.5230 5.0605 48 1 5.2324 -5.4094 6.9044 49 1 4.8141 -4.3064 5.5220 50 1 3.7248 -2.6535 -0.3207 51 1 4.0569 -0.9124 -0.4829 52 1 5.0599 -1.9132 0.5944 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078621484.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:19 Heat of formation + Delta-G solvation = 69.324490 kcal Electronic energy + Delta-G solvation = -30757.762023 eV Core-core repulsion = 26759.640040 eV Total energy + Delta-G solvation = -3998.121982 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.75056 -41.91729 -39.89987 -36.70863 -36.39784 -35.62451 -34.54502 -33.95554 -31.75238 -30.61731 -28.55143 -28.01770 -26.81417 -26.47619 -25.46520 -24.83654 -23.65041 -22.97186 -21.76095 -21.45648 -20.55371 -19.46142 -19.04670 -18.12970 -17.57892 -17.35974 -17.29115 -16.57499 -16.33382 -16.09527 -15.69715 -15.54396 -15.32689 -14.90716 -14.86215 -14.71121 -14.27145 -13.93430 -13.91763 -13.64674 -13.43236 -13.40063 -13.18584 -13.12186 -12.99511 -12.84972 -12.79262 -12.60101 -12.36667 -12.28602 -12.11667 -12.10704 -11.83091 -11.78799 -11.75546 -11.41111 -11.38868 -11.06888 -10.96799 -10.64372 -10.20189 -9.94037 -9.88066 -8.94390 -7.93246 -5.20521 0.49645 1.10092 1.47602 1.50192 1.54372 1.56030 2.14753 2.33437 2.57802 3.28502 3.37306 3.42508 3.50744 3.59156 3.75331 3.83954 3.93101 3.97301 4.06884 4.14417 4.19777 4.30723 4.35380 4.39965 4.46377 4.52642 4.57934 4.63456 4.64765 4.70659 4.75282 4.75701 4.83572 4.94129 4.97652 4.98559 5.01818 5.05384 5.08981 5.12896 5.15720 5.29569 5.32749 5.38423 5.44011 5.45811 5.51901 5.57674 5.68216 5.85270 6.28777 6.44992 6.88859 7.14277 7.35855 8.11976 8.37053 9.29660 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018070 B = 0.002212 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.188192 B =12654.817835 C =12771.372676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.020 4.020 3 C -0.144 4.144 4 C 0.031 3.969 5 C -0.196 4.196 6 C -0.043 4.043 7 C 0.601 3.399 8 O -0.572 6.572 9 N -0.691 5.691 10 C 0.161 3.839 11 H 0.113 0.887 12 C -0.170 4.170 13 C 0.166 3.834 14 H 0.079 0.921 15 N -0.716 5.716 16 C -0.243 4.243 17 H 0.075 0.925 18 C -0.074 4.074 19 N -0.968 5.968 20 Si 0.971 3.029 21 H -0.278 1.278 22 H -0.296 1.296 23 H -0.281 1.281 24 C -0.115 4.115 25 C -0.119 4.119 26 C -0.122 4.122 27 C -0.110 4.110 28 N -0.275 5.275 29 N -0.274 5.274 30 C 0.070 3.930 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.107 0.893 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.048 0.952 38 H 0.157 0.843 39 H 0.410 0.590 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.377 0.623 43 H 0.250 0.750 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.084 0.916 48 H 0.071 0.929 49 H 0.065 0.935 50 H 0.104 0.896 51 H 0.124 0.876 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.767 6.300 -27.908 31.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.040 4.040 3 C -0.201 4.201 4 C -0.094 4.094 5 C -0.224 4.224 6 C -0.201 4.201 7 C 0.387 3.613 8 O -0.450 6.450 9 N -0.341 5.341 10 C 0.055 3.945 11 H 0.131 0.869 12 C -0.212 4.212 13 C 0.055 3.945 14 H 0.097 0.903 15 N -0.354 5.354 16 C -0.374 4.374 17 H 0.093 0.907 18 C -0.266 4.266 19 N -0.618 5.618 20 Si 0.800 3.200 21 H -0.204 1.204 22 H -0.222 1.222 23 H -0.207 1.207 24 C -0.117 4.117 25 C -0.156 4.156 26 C -0.159 4.159 27 C -0.148 4.148 28 N -0.112 5.112 29 N -0.063 5.063 30 C -0.068 4.068 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.125 0.875 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.175 0.825 39 H 0.248 0.752 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.211 0.789 43 H 0.059 0.941 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.103 0.897 48 H 0.090 0.910 49 H 0.084 0.916 50 H 0.123 0.877 51 H 0.142 0.858 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.355 5.935 -27.345 30.588 hybrid contribution 0.631 0.299 1.089 1.293 sum -11.724 6.234 -26.256 29.423 Atomic orbital electron populations 1.21839 0.92703 1.02385 1.03202 1.19846 0.97018 0.95585 0.91534 1.21861 1.01113 0.94061 1.03093 1.21836 0.89971 0.99109 0.98504 1.21577 1.03317 1.05384 0.92118 1.21753 0.97546 1.06188 0.94624 1.17234 0.81792 0.77898 0.84357 1.90739 1.31997 1.53899 1.68349 1.45769 1.27895 1.49479 1.10915 1.21916 0.99301 0.94223 0.79041 0.86921 1.24142 0.98525 0.99750 0.98775 1.21397 0.87094 0.92765 0.93197 0.90269 1.42415 1.08795 1.78193 1.06011 1.19652 0.95697 1.35620 0.86476 0.90728 1.25511 0.96607 1.02916 1.01603 1.69801 1.04539 1.52987 1.34498 0.85254 0.76483 0.77833 0.80431 1.20387 1.22247 1.20748 1.23336 0.98090 0.93402 0.96890 1.22661 0.99244 0.95650 0.98083 1.22744 0.96505 0.99498 0.97168 1.22387 0.96499 0.97918 0.97982 1.73490 1.23529 1.21430 0.92746 1.45775 1.19652 1.33212 1.07625 1.22634 0.93169 1.05573 0.85442 0.92759 0.89667 0.92771 0.87480 0.92608 0.89533 0.93301 0.82498 0.75241 0.91578 0.92207 0.78891 0.94080 0.90546 0.90571 0.90724 0.89729 0.91030 0.91610 0.87745 0.85764 0.88100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.78 71.98 0.63 -0.62 16 2 C -0.02 -0.18 2.89 -11.54 -0.03 -0.21 16 3 C -0.14 -1.14 9.18 71.98 0.66 -0.47 16 4 C 0.03 0.53 5.84 41.40 0.24 0.77 16 5 C -0.20 -4.72 9.95 22.41 0.22 -4.50 16 6 C -0.04 -1.24 7.13 42.46 0.30 -0.93 16 7 C 0.60 20.01 7.83 86.75 0.68 20.69 16 8 O -0.57 -22.17 16.53 -3.96 -0.07 -22.24 16 9 N -0.69 -21.42 5.27 -444.13 -2.34 -23.76 16 10 C 0.16 5.31 4.12 45.29 0.19 5.50 16 11 H 0.11 3.81 7.46 -2.39 -0.02 3.79 16 12 C -0.17 -6.48 7.68 31.23 0.24 -6.24 16 13 C 0.17 6.81 4.36 45.28 0.20 7.01 16 14 H 0.08 3.24 8.10 -2.39 -0.02 3.22 16 15 N -0.72 -36.31 5.30 -321.57 -1.70 -38.01 16 16 C -0.24 -13.59 9.97 84.03 0.84 -12.75 16 17 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 18 C -0.07 -4.28 5.50 84.86 0.47 -3.82 16 19 N -0.97 -59.29 13.06 21.65 0.28 -59.00 16 20 Si 0.97 46.76 29.55 68.60 2.03 48.78 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 22 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 23 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 24 C -0.11 -3.84 1.06 -52.31 -0.06 -3.89 16 25 C -0.12 -3.52 7.84 30.89 0.24 -3.28 16 26 C -0.12 -3.26 8.08 31.23 0.25 -3.01 16 27 C -0.11 -3.55 6.78 30.89 0.21 -3.34 16 28 N -0.27 -6.91 11.67 -48.17 -0.56 -7.47 16 29 N -0.27 -4.86 3.70 -355.95 -1.32 -6.17 16 30 C 0.07 0.50 10.89 127.77 1.39 1.89 16 31 H 0.05 0.60 7.35 -2.39 -0.02 0.58 16 32 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 33 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.11 0.42 7.42 -2.39 -0.02 0.40 16 35 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.09 0.34 8.14 -2.38 -0.02 0.32 16 37 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 38 H 0.16 3.68 7.46 -2.91 -0.02 3.66 16 39 H 0.41 11.97 6.45 -92.71 -0.60 11.37 16 40 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 41 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.38 20.28 6.23 -92.71 -0.58 19.70 16 43 H 0.25 14.95 8.31 -92.70 -0.77 14.17 16 44 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 48 H 0.07 2.73 7.03 -2.39 -0.02 2.72 16 49 H 0.07 1.98 6.42 -2.39 -0.02 1.97 16 50 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 51 H 0.12 0.14 7.45 -2.39 -0.02 0.12 16 52 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -73.88 417.64 2.75 -71.13 By element: Atomic # 1 Polarization: 44.20 SS G_CDS: -0.24 Total: 43.95 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: 6.67 Total: -7.20 kcal Atomic # 7 Polarization: -128.78 SS G_CDS: -5.64 Total: -134.42 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.07 Total: -22.24 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.78 kcal Total: -73.88 2.75 -71.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078621484.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.453 kcal (2) G-P(sol) polarization free energy of solvation -73.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds