Wall clock time and date at job start Wed Apr 1 2020 05:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47212 * 2 1 4 4 C 1.53001 * 109.47101 * 239.99811 * 2 1 3 5 5 C 1.50703 * 109.47127 * 120.00166 * 2 1 3 6 6 N 1.35384 * 126.56161 * 2.15626 * 5 2 1 7 7 H 0.97000 * 126.13489 * 0.24192 * 6 5 2 8 8 C 1.35850 * 107.72580 * 179.97438 * 6 5 2 9 9 N 1.30165 * 109.00322 * 0.02562 * 8 6 5 10 10 C 1.35755 * 108.86914 * 359.97438 * 9 8 6 11 11 C 1.47325 * 126.23511 * 180.02562 * 10 9 8 12 12 O 1.21626 * 120.00187 * 174.40851 * 11 10 9 13 13 N 1.34779 * 120.00365 * 354.41123 * 11 10 9 14 14 C 1.46492 * 120.00210 * 179.97438 * 13 11 10 15 15 H 1.09002 * 112.89098 * 336.34553 * 14 13 11 16 16 C 1.53953 * 113.66352 * 107.81518 * 14 13 11 17 17 C 1.53947 * 87.29856 * 89.73921 * 16 14 13 18 18 H 1.09006 * 113.66134 * 270.26545 * 17 16 14 19 19 N 1.46493 * 113.66445 * 139.20754 * 17 16 14 20 20 C 1.36932 * 120.00221 * 107.81524 * 19 17 16 21 21 H 1.08004 * 120.00019 * 359.97438 * 20 19 17 22 22 C 1.38811 * 120.00216 * 179.97438 * 20 19 17 23 23 N 1.31624 * 119.99973 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00203 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46706 * 90.00160 * 24 22 20 26 26 H 1.48497 * 109.47438 * 210.00032 * 24 22 20 27 27 H 1.48497 * 109.47198 * 330.00689 * 24 22 20 28 28 C 1.52910 * 113.66269 * 205.00107 * 14 13 11 29 29 C 1.52912 * 121.13907 * 144.70953 * 28 14 13 30 30 C 1.53953 * 86.78231 * 209.37896 * 29 28 14 31 31 C 1.52910 * 121.13743 * 36.14464 * 28 14 13 32 32 H 1.09002 * 109.47081 * 300.00194 * 1 2 3 33 33 H 1.09004 * 109.47021 * 60.00261 * 1 2 3 34 34 H 1.09000 * 109.47259 * 179.97438 * 1 2 3 35 35 H 1.08995 * 109.47133 * 185.13764 * 3 2 1 36 36 H 1.08999 * 109.47202 * 305.13676 * 3 2 1 37 37 H 1.08997 * 109.47297 * 65.13436 * 3 2 1 38 38 H 1.09002 * 109.47344 * 295.00330 * 4 2 1 39 39 H 1.08997 * 109.46968 * 55.00640 * 4 2 1 40 40 H 1.08995 * 109.47279 * 175.00383 * 4 2 1 41 41 H 1.07999 * 125.49102 * 180.02562 * 8 6 5 42 42 H 0.96995 * 119.99551 * 359.97438 * 13 11 10 43 43 H 1.09002 * 113.57904 * 204.34122 * 16 14 13 44 44 H 1.09002 * 113.57694 * 335.12806 * 16 14 13 45 45 H 0.97005 * 119.99888 * 287.80991 * 19 17 16 46 46 H 0.96993 * 119.99978 * 179.97438 * 23 22 20 47 47 H 1.09003 * 113.65938 * 323.84922 * 29 28 14 48 48 H 1.08996 * 113.66127 * 94.91022 * 29 28 14 49 49 H 1.08997 * 113.57756 * 270.12786 * 30 29 28 50 50 H 1.08998 * 113.65144 * 139.34781 * 30 29 28 51 51 H 1.09004 * 113.66030 * 265.08851 * 31 28 14 52 52 H 1.08989 * 113.66268 * 36.05633 * 31 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7105 1.2305 6 7 1.2767 -1.3072 2.1822 7 1 0.3081 -1.3585 2.1946 8 6 2.1185 -1.8265 3.1134 9 7 3.3461 -1.5689 2.7656 10 6 3.3355 -0.8756 1.5985 11 6 4.5163 -0.3902 0.8632 12 8 4.3815 0.1326 -0.2267 13 7 5.7459 -0.5255 1.3981 14 6 6.9200 -0.0434 0.6666 15 1 6.7539 0.0177 -0.4089 16 6 7.5454 1.2273 1.2704 17 6 8.4196 0.2992 2.1331 18 1 7.9674 0.0366 3.0896 19 7 9.8072 0.7508 2.2621 20 6 10.2517 1.2668 3.4501 21 1 9.5791 1.3411 4.2919 22 6 11.5667 1.6942 3.5725 23 7 12.3864 1.6032 2.5467 24 14 12.1728 2.3988 5.1929 25 1 12.7116 1.3031 6.0382 26 1 13.2435 3.3937 4.9305 27 1 11.0453 3.0593 5.8982 28 6 8.2168 -0.7586 1.0476 29 6 9.3001 -1.0400 0.0058 30 6 9.6715 -2.2716 0.8515 31 6 8.2275 -2.2499 1.3850 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 3.1261 1.4438 -0.0920 36 1 1.6036 1.9822 -0.8404 37 1 1.7538 1.9291 0.9324 38 1 1.7516 -1.7716 -1.2056 39 1 1.6055 -0.2617 -2.1369 40 1 3.1263 -0.6445 -1.2951 41 1 1.8176 -2.3660 3.9993 42 1 5.8534 -0.9422 2.2674 43 1 8.1136 1.8175 0.5515 44 1 6.8424 1.8265 1.8491 45 1 10.4112 0.6843 1.5060 46 1 13.3052 1.9022 2.6321 47 1 8.9055 -1.2887 -0.9794 48 1 10.0817 -0.2811 -0.0286 49 1 10.4216 -2.0660 1.6151 50 1 9.9038 -3.1558 0.2579 51 1 8.1524 -2.4575 2.4524 52 1 7.5304 -2.8384 0.7886 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078628349.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:29 Heat of formation + Delta-G solvation = 75.353349 kcal Electronic energy + Delta-G solvation = -31653.327919 eV Core-core repulsion = 27655.467367 eV Total energy + Delta-G solvation = -3997.860552 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.55911 -40.42113 -38.68861 -36.88972 -34.86664 -33.92924 -32.94254 -31.97507 -29.89105 -29.25139 -27.46514 -27.26043 -25.36472 -24.93691 -24.02482 -23.57036 -22.28276 -21.83406 -20.89199 -20.08710 -19.44525 -18.04885 -17.80229 -16.95332 -16.28467 -15.89516 -15.62732 -15.06818 -14.85179 -14.81599 -14.70738 -14.66864 -14.41274 -13.85474 -13.70100 -13.50383 -13.22582 -12.61147 -12.56378 -12.41511 -12.33892 -11.92797 -11.77822 -11.65638 -11.60639 -11.38177 -11.26285 -11.14511 -11.07523 -10.83315 -10.74034 -10.48534 -10.34702 -10.29700 -10.12214 -10.02081 -9.71119 -9.63785 -9.48347 -9.29478 -8.78880 -8.71719 -8.41665 -6.91044 -5.74998 -3.02833 1.45538 2.28281 2.66530 3.43346 3.45279 3.50980 3.52331 3.56395 4.16169 4.40492 4.51030 4.61627 4.70399 4.89462 4.92355 5.04169 5.12506 5.16822 5.23547 5.27582 5.36439 5.38309 5.40510 5.52544 5.57517 5.64565 5.69561 5.78467 5.88003 5.93712 5.94167 5.95755 6.05167 6.12657 6.16380 6.20597 6.22857 6.27018 6.41312 6.45020 6.49183 6.53226 6.65465 6.69167 6.84899 6.93977 6.98999 7.04418 7.18915 7.53306 7.73518 7.89812 8.44150 8.50448 9.55621 10.13723 10.48776 11.47407 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015564 B = 0.002637 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.649278 B =10613.878769 C =10996.957024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.012 3.988 3 C -0.158 4.158 4 C -0.156 4.156 5 C 0.080 3.920 6 N -0.565 5.565 7 H 0.421 0.579 8 C 0.182 3.818 9 N -0.458 5.458 10 C -0.059 4.059 11 C 0.600 3.400 12 O -0.535 6.535 13 N -0.685 5.685 14 C 0.130 3.870 15 H 0.097 0.903 16 C -0.174 4.174 17 C 0.191 3.809 18 H 0.076 0.924 19 N -0.708 5.708 20 C -0.241 4.241 21 H 0.070 0.930 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.905 3.095 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C -0.121 4.121 29 C -0.109 4.109 30 C -0.131 4.131 31 C -0.124 4.124 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.104 0.896 36 H 0.057 0.943 37 H 0.043 0.957 38 H 0.042 0.958 39 H 0.056 0.944 40 H 0.106 0.894 41 H 0.214 0.786 42 H 0.408 0.592 43 H 0.085 0.915 44 H 0.058 0.942 45 H 0.387 0.613 46 H 0.255 0.745 47 H 0.073 0.927 48 H 0.078 0.922 49 H 0.089 0.911 50 H 0.055 0.945 51 H 0.064 0.936 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.484 -8.292 -4.653 27.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.011 3.989 3 C -0.215 4.215 4 C -0.213 4.213 5 C -0.042 4.042 6 N -0.168 5.168 7 H 0.260 0.740 8 C -0.103 4.103 9 N -0.178 5.178 10 C -0.187 4.187 11 C 0.388 3.612 12 O -0.414 6.414 13 N -0.333 5.333 14 C 0.024 3.976 15 H 0.115 0.885 16 C -0.216 4.216 17 C 0.079 3.921 18 H 0.094 0.906 19 N -0.346 5.346 20 C -0.372 4.372 21 H 0.088 0.912 22 C -0.208 4.208 23 N -0.580 5.580 24 Si 0.736 3.264 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.124 4.124 29 C -0.147 4.147 30 C -0.169 4.169 31 C -0.162 4.162 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.123 0.877 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.124 0.876 41 H 0.230 0.770 42 H 0.243 0.757 43 H 0.104 0.896 44 H 0.077 0.923 45 H 0.223 0.777 46 H 0.065 0.935 47 H 0.092 0.908 48 H 0.097 0.903 49 H 0.108 0.892 50 H 0.074 0.926 51 H 0.083 0.917 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -24.667 -8.074 -4.767 26.389 hybrid contribution -0.820 0.281 0.949 1.285 sum -25.487 -7.793 -3.818 26.924 Atomic orbital electron populations 1.22040 0.94811 1.01534 1.02705 1.19084 0.94194 0.95775 0.89861 1.22219 1.06187 0.92323 1.00752 1.22222 1.06293 0.98214 0.94612 1.21180 0.90861 0.99087 0.93088 1.43175 1.10667 1.43381 1.19566 0.73996 1.25119 0.84825 1.03382 0.96997 1.70617 1.21018 1.14531 1.11598 1.20358 0.92495 1.09015 0.96865 1.16826 0.81817 0.78152 0.84427 1.90504 1.85099 1.45153 1.20692 1.45404 1.04991 1.60128 1.22761 1.21730 0.83332 0.96104 0.96396 0.88532 1.24262 0.99630 0.96689 1.01022 1.21290 0.86899 0.90249 0.93682 0.90614 1.42396 1.06229 1.72738 1.13270 1.19296 0.94409 1.33074 0.90422 0.91195 1.24728 0.96447 1.02159 0.97476 1.69654 1.05576 1.53287 1.29517 0.86216 0.78299 0.78500 0.83339 1.21778 1.21842 1.20785 1.23574 0.94402 0.94919 0.99480 1.22443 0.97672 0.98508 0.96063 1.22744 0.97088 0.97227 0.99823 1.22622 0.97130 0.95713 1.00737 0.92739 0.91168 0.92850 0.87742 0.92375 0.93752 0.93921 0.92471 0.87567 0.77006 0.75675 0.89618 0.92321 0.77721 0.93514 0.90819 0.90338 0.89245 0.92597 0.91738 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 7.57 37.16 0.28 -0.72 16 2 C 0.01 0.12 0.75 -155.66 -0.12 0.00 16 3 C -0.16 -1.72 8.19 37.16 0.30 -1.42 16 4 C -0.16 -1.63 8.25 37.16 0.31 -1.32 16 5 C 0.08 0.84 5.59 -81.68 -0.46 0.38 16 6 N -0.56 -4.10 5.83 -10.11 -0.06 -4.16 16 7 H 0.42 1.59 8.10 -40.82 -0.33 1.26 16 8 C 0.18 1.50 13.04 -89.91 -1.17 0.33 16 9 N -0.46 -5.65 11.02 -11.04 -0.12 -5.77 16 10 C -0.06 -0.77 6.81 -83.09 -0.57 -1.34 16 11 C 0.60 8.95 7.51 -12.56 -0.09 8.86 16 12 O -0.53 -8.43 9.44 5.25 0.05 -8.39 16 13 N -0.69 -10.20 5.04 -54.48 -0.27 -10.48 16 14 C 0.13 2.08 4.12 -67.48 -0.28 1.80 16 15 H 0.10 1.59 7.46 -51.93 -0.39 1.20 16 16 C -0.17 -3.18 7.68 -25.75 -0.20 -3.38 16 17 C 0.19 3.79 4.27 -67.48 -0.29 3.50 16 18 H 0.08 1.53 8.10 -51.93 -0.42 1.10 16 19 N -0.71 -17.35 5.32 -52.99 -0.28 -17.63 16 20 C -0.24 -6.62 9.97 -15.06 -0.15 -6.77 16 21 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 23 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 24 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 C -0.12 -2.02 0.92 -154.71 -0.14 -2.16 16 29 C -0.11 -1.80 7.47 -26.28 -0.20 -1.99 16 30 C -0.13 -2.12 8.08 -25.75 -0.21 -2.33 16 31 C -0.12 -1.90 7.49 -26.28 -0.20 -2.10 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.29 8.04 -51.93 -0.42 -0.13 16 35 H 0.10 1.44 4.54 -51.93 -0.24 1.20 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.11 1.40 4.65 -51.93 -0.24 1.16 16 41 H 0.21 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.41 5.98 8.34 -40.82 -0.34 5.64 16 43 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.39 10.00 5.92 -40.82 -0.24 9.76 16 46 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 48 H 0.08 1.47 6.42 -51.93 -0.33 1.14 16 49 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 50 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 52 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 405.42 15.07 6.11 6.11 Total: -1.00 -31.90 405.42 -10.56 -42.46 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: -8.41 Total: 16.70 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -3.27 Total: -9.09 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: -0.01 Total: -65.18 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.05 Total: -8.39 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.90 -10.56 -42.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078628349.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.816 kcal (2) G-P(sol) polarization free energy of solvation -31.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds