Wall clock time and date at job start Wed Apr 1 2020 05:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47212 * 2 1 4 4 C 1.53001 * 109.47101 * 239.99811 * 2 1 3 5 5 C 1.50703 * 109.47127 * 120.00166 * 2 1 3 6 6 N 1.35384 * 126.56161 * 2.15626 * 5 2 1 7 7 H 0.97000 * 126.13489 * 0.24192 * 6 5 2 8 8 C 1.35850 * 107.72580 * 179.97438 * 6 5 2 9 9 N 1.30165 * 109.00322 * 0.02562 * 8 6 5 10 10 C 1.35755 * 108.86914 * 359.97438 * 9 8 6 11 11 C 1.47325 * 126.23511 * 180.02562 * 10 9 8 12 12 O 1.21626 * 120.00187 * 174.40851 * 11 10 9 13 13 N 1.34779 * 120.00365 * 354.41123 * 11 10 9 14 14 C 1.46492 * 120.00210 * 179.97438 * 13 11 10 15 15 H 1.09002 * 112.89098 * 336.34553 * 14 13 11 16 16 C 1.53953 * 113.66352 * 107.81518 * 14 13 11 17 17 C 1.53947 * 87.29856 * 89.73921 * 16 14 13 18 18 H 1.09006 * 113.66134 * 270.26545 * 17 16 14 19 19 N 1.46493 * 113.66445 * 139.20754 * 17 16 14 20 20 C 1.36932 * 120.00221 * 107.81524 * 19 17 16 21 21 H 1.08004 * 120.00019 * 359.97438 * 20 19 17 22 22 C 1.38811 * 120.00216 * 179.97438 * 20 19 17 23 23 N 1.31624 * 119.99973 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00203 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46706 * 90.00160 * 24 22 20 26 26 H 1.48497 * 109.47438 * 210.00032 * 24 22 20 27 27 H 1.48497 * 109.47198 * 330.00689 * 24 22 20 28 28 C 1.52910 * 113.66269 * 205.00107 * 14 13 11 29 29 C 1.52912 * 121.13907 * 144.70953 * 28 14 13 30 30 C 1.53953 * 86.78231 * 209.37896 * 29 28 14 31 31 C 1.52910 * 121.13743 * 36.14464 * 28 14 13 32 32 H 1.09002 * 109.47081 * 300.00194 * 1 2 3 33 33 H 1.09004 * 109.47021 * 60.00261 * 1 2 3 34 34 H 1.09000 * 109.47259 * 179.97438 * 1 2 3 35 35 H 1.08995 * 109.47133 * 185.13764 * 3 2 1 36 36 H 1.08999 * 109.47202 * 305.13676 * 3 2 1 37 37 H 1.08997 * 109.47297 * 65.13436 * 3 2 1 38 38 H 1.09002 * 109.47344 * 295.00330 * 4 2 1 39 39 H 1.08997 * 109.46968 * 55.00640 * 4 2 1 40 40 H 1.08995 * 109.47279 * 175.00383 * 4 2 1 41 41 H 1.07999 * 125.49102 * 180.02562 * 8 6 5 42 42 H 0.96995 * 119.99551 * 359.97438 * 13 11 10 43 43 H 1.09002 * 113.57904 * 204.34122 * 16 14 13 44 44 H 1.09002 * 113.57694 * 335.12806 * 16 14 13 45 45 H 0.97005 * 119.99888 * 287.80991 * 19 17 16 46 46 H 0.96993 * 119.99978 * 179.97438 * 23 22 20 47 47 H 1.09003 * 113.65938 * 323.84922 * 29 28 14 48 48 H 1.08996 * 113.66127 * 94.91022 * 29 28 14 49 49 H 1.08997 * 113.57756 * 270.12786 * 30 29 28 50 50 H 1.08998 * 113.65144 * 139.34781 * 30 29 28 51 51 H 1.09004 * 113.66030 * 265.08851 * 31 28 14 52 52 H 1.08989 * 113.66268 * 36.05633 * 31 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7105 1.2305 6 7 1.2767 -1.3072 2.1822 7 1 0.3081 -1.3585 2.1946 8 6 2.1185 -1.8265 3.1134 9 7 3.3461 -1.5689 2.7656 10 6 3.3355 -0.8756 1.5985 11 6 4.5163 -0.3902 0.8632 12 8 4.3815 0.1326 -0.2267 13 7 5.7459 -0.5255 1.3981 14 6 6.9200 -0.0434 0.6666 15 1 6.7539 0.0177 -0.4089 16 6 7.5454 1.2273 1.2704 17 6 8.4196 0.2992 2.1331 18 1 7.9674 0.0366 3.0896 19 7 9.8072 0.7508 2.2621 20 6 10.2517 1.2668 3.4501 21 1 9.5791 1.3411 4.2919 22 6 11.5667 1.6942 3.5725 23 7 12.3864 1.6032 2.5467 24 14 12.1728 2.3988 5.1929 25 1 12.7116 1.3031 6.0382 26 1 13.2435 3.3937 4.9305 27 1 11.0453 3.0593 5.8982 28 6 8.2168 -0.7586 1.0476 29 6 9.3001 -1.0400 0.0058 30 6 9.6715 -2.2716 0.8515 31 6 8.2275 -2.2499 1.3850 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 3.1261 1.4438 -0.0920 36 1 1.6036 1.9822 -0.8404 37 1 1.7538 1.9291 0.9324 38 1 1.7516 -1.7716 -1.2056 39 1 1.6055 -0.2617 -2.1369 40 1 3.1263 -0.6445 -1.2951 41 1 1.8176 -2.3660 3.9993 42 1 5.8534 -0.9422 2.2674 43 1 8.1136 1.8175 0.5515 44 1 6.8424 1.8265 1.8491 45 1 10.4112 0.6843 1.5060 46 1 13.3052 1.9022 2.6321 47 1 8.9055 -1.2887 -0.9794 48 1 10.0817 -0.2811 -0.0286 49 1 10.4216 -2.0660 1.6151 50 1 9.9038 -3.1558 0.2579 51 1 8.1524 -2.4575 2.4524 52 1 7.5304 -2.8384 0.7886 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078628349.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:28 Heat of formation + Delta-G solvation = 56.109142 kcal Electronic energy + Delta-G solvation = -31654.162410 eV Core-core repulsion = 27655.467367 eV Total energy + Delta-G solvation = -3998.695043 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.30960 -41.81147 -39.83581 -37.66225 -36.30627 -35.66678 -33.94613 -33.32876 -31.67059 -30.12570 -28.10157 -28.08449 -26.73830 -26.59346 -25.51674 -24.87700 -23.36480 -22.98507 -21.86529 -21.29920 -20.44723 -19.58886 -18.83635 -18.55841 -17.36765 -17.17110 -16.65040 -16.47521 -16.32803 -15.78697 -15.75236 -15.57592 -15.50480 -15.31062 -15.02835 -14.50074 -14.30853 -14.01589 -13.86853 -13.46161 -13.30438 -13.16249 -13.14148 -13.06111 -12.86505 -12.75960 -12.50530 -12.37930 -12.33251 -12.12932 -11.91671 -11.89518 -11.84966 -11.83608 -11.23972 -11.16577 -11.06445 -11.04702 -10.86304 -10.64974 -10.64277 -9.80837 -9.40725 -8.93582 -7.92243 -5.19462 0.58852 1.47560 1.48627 1.51527 1.57049 1.96823 2.37093 2.56744 2.57563 3.38509 3.46824 3.51842 3.62837 3.73646 3.81011 3.85586 3.97234 4.03122 4.05596 4.14875 4.26046 4.29904 4.36158 4.39285 4.61724 4.65594 4.67480 4.76650 4.78619 4.86928 4.88922 4.91720 4.93457 5.02722 5.04338 5.09703 5.11388 5.12862 5.15248 5.20898 5.24276 5.30826 5.46707 5.50421 5.56893 5.59649 5.61659 5.66183 5.89430 6.29996 6.37417 6.64160 6.93817 7.36939 7.38888 8.13680 8.38414 9.30912 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015564 B = 0.002637 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.649278 B =10613.878769 C =10996.957024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.012 3.988 3 C -0.155 4.155 4 C -0.153 4.153 5 C 0.084 3.916 6 N -0.548 5.548 7 H 0.441 0.559 8 C 0.200 3.800 9 N -0.499 5.499 10 C -0.093 4.093 11 C 0.594 3.406 12 O -0.548 6.548 13 N -0.686 5.686 14 C 0.152 3.848 15 H 0.097 0.903 16 C -0.170 4.170 17 C 0.179 3.821 18 H 0.072 0.928 19 N -0.718 5.718 20 C -0.241 4.241 21 H 0.073 0.927 22 C -0.073 4.073 23 N -0.967 5.967 24 Si 0.969 3.031 25 H -0.287 1.287 26 H -0.297 1.297 27 H -0.272 1.272 28 C -0.114 4.114 29 C -0.108 4.108 30 C -0.129 4.129 31 C -0.110 4.110 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.043 0.957 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.257 0.743 42 H 0.409 0.591 43 H 0.072 0.928 44 H 0.053 0.947 45 H 0.378 0.622 46 H 0.250 0.750 47 H 0.099 0.901 48 H 0.050 0.950 49 H 0.056 0.944 50 H 0.081 0.919 51 H 0.062 0.938 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.944 -9.734 -4.046 30.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.010 3.990 3 C -0.213 4.213 4 C -0.210 4.210 5 C -0.039 4.039 6 N -0.152 5.152 7 H 0.283 0.717 8 C -0.085 4.085 9 N -0.219 5.219 10 C -0.220 4.220 11 C 0.383 3.617 12 O -0.428 6.428 13 N -0.334 5.334 14 C 0.046 3.954 15 H 0.115 0.885 16 C -0.212 4.212 17 C 0.069 3.931 18 H 0.090 0.910 19 N -0.357 5.357 20 C -0.373 4.373 21 H 0.091 0.909 22 C -0.265 4.265 23 N -0.618 5.618 24 Si 0.798 3.202 25 H -0.214 1.214 26 H -0.224 1.224 27 H -0.197 1.197 28 C -0.116 4.116 29 C -0.146 4.146 30 C -0.166 4.166 31 C -0.147 4.147 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.272 0.728 42 H 0.245 0.755 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.212 0.788 46 H 0.059 0.941 47 H 0.118 0.882 48 H 0.069 0.931 49 H 0.075 0.925 50 H 0.099 0.901 51 H 0.081 0.919 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -28.216 -9.532 -4.153 30.071 hybrid contribution 0.125 0.718 0.755 1.049 sum -28.091 -8.814 -3.398 29.637 Atomic orbital electron populations 1.22001 0.91928 1.02939 1.03663 1.19103 0.96413 0.94392 0.89071 1.22140 1.04199 0.93774 1.01159 1.22131 1.04379 0.98829 0.95670 1.21247 0.90456 0.98608 0.93634 1.43117 1.11594 1.42139 1.18337 0.71666 1.25974 0.83790 1.01426 0.97336 1.70566 1.23448 1.16017 1.11868 1.20200 0.92636 1.11172 0.98035 1.17212 0.82237 0.77817 0.84476 1.90525 1.85396 1.45590 1.21335 1.45337 1.04772 1.60508 1.22761 1.21392 0.83641 0.94140 0.96267 0.88530 1.24110 0.99250 0.97331 1.00482 1.21508 0.84785 0.92127 0.94706 0.91000 1.42515 1.07874 1.73122 1.12168 1.19657 0.94507 1.31823 0.91327 0.90936 1.25486 0.96837 1.03547 1.00633 1.69808 1.05552 1.55016 1.31434 0.85206 0.77649 0.77600 0.79713 1.21430 1.22351 1.19705 1.23360 0.94616 0.95372 0.98273 1.22486 0.96798 0.97954 0.97348 1.22647 0.96790 0.97976 0.99211 1.22571 0.96811 0.94352 1.00997 0.91568 0.90550 0.91195 0.90840 0.91307 0.93792 0.93392 0.91431 0.90512 0.72756 0.75539 0.90931 0.92843 0.78783 0.94088 0.88239 0.93126 0.92494 0.90061 0.91926 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 7.57 71.98 0.54 -0.88 16 2 C 0.01 0.20 0.75 -52.93 -0.04 0.16 16 3 C -0.16 -3.28 8.19 71.98 0.59 -2.69 16 4 C -0.15 -3.00 8.25 71.98 0.59 -2.41 16 5 C 0.08 1.61 5.59 41.59 0.23 1.85 16 6 N -0.55 -6.09 5.83 -185.91 -1.08 -7.17 16 7 H 0.44 1.41 8.10 -92.71 -0.75 0.66 16 8 C 0.20 2.64 13.04 180.10 2.35 4.99 16 9 N -0.50 -11.49 11.02 -188.83 -2.08 -13.57 16 10 C -0.09 -2.37 6.81 40.50 0.28 -2.10 16 11 C 0.59 17.81 7.51 86.63 0.65 18.46 16 12 O -0.55 -17.65 9.44 -4.11 -0.04 -17.69 16 13 N -0.69 -20.50 5.04 -444.51 -2.24 -22.75 16 14 C 0.15 4.91 4.12 45.28 0.19 5.10 16 15 H 0.10 3.18 7.46 -2.39 -0.02 3.17 16 16 C -0.17 -6.43 7.68 31.23 0.24 -6.19 16 17 C 0.18 7.31 4.27 45.28 0.19 7.50 16 18 H 0.07 2.97 8.10 -2.38 -0.02 2.95 16 19 N -0.72 -36.55 5.32 -321.57 -1.71 -38.26 16 20 C -0.24 -13.57 9.97 84.03 0.84 -12.73 16 21 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 22 C -0.07 -4.22 5.50 84.86 0.47 -3.76 16 23 N -0.97 -59.66 13.06 21.65 0.28 -59.38 16 24 Si 0.97 46.91 29.55 68.60 2.03 48.94 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 26 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 27 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 28 C -0.11 -3.81 0.92 -52.31 -0.05 -3.86 16 29 C -0.11 -3.57 7.47 30.89 0.23 -3.34 16 30 C -0.13 -4.11 8.08 31.23 0.25 -3.86 16 31 C -0.11 -3.25 7.49 30.89 0.23 -3.01 16 32 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.07 0.46 8.04 -2.39 -0.02 0.44 16 35 H 0.07 2.07 4.54 -2.40 -0.01 2.05 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.08 2.03 4.65 -2.39 -0.01 2.02 16 41 H 0.26 0.78 8.06 -2.91 -0.02 0.76 16 42 H 0.41 12.00 8.34 -92.71 -0.77 11.23 16 43 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 44 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.38 20.49 5.92 -92.70 -0.55 19.94 16 46 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 47 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 48 H 0.05 1.97 6.42 -2.39 -0.02 1.96 16 49 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 50 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 51 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 52 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -72.19 405.42 1.82 -70.36 By element: Atomic # 1 Polarization: 47.40 SS G_CDS: -1.12 Total: 46.29 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: 7.79 Total: -6.77 kcal Atomic # 7 Polarization: -134.29 SS G_CDS: -6.84 Total: -141.13 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.04 Total: -17.69 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -72.19 1.82 -70.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078628349.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.471 kcal (2) G-P(sol) polarization free energy of solvation -72.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds