Wall clock time and date at job start Wed Apr 1 2020 05:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46801 * 2 1 4 4 C 1.52995 * 109.47500 * 239.99991 * 2 1 3 5 5 C 1.50700 * 109.47353 * 119.99660 * 2 1 3 6 6 C 1.39677 * 126.06473 * 75.26622 * 5 2 1 7 7 C 1.38406 * 105.35503 * 180.14828 * 6 5 2 8 8 C 1.47158 * 126.88225 * 179.91198 * 7 6 5 9 9 O 1.21625 * 120.00469 * 359.71966 * 8 7 6 10 10 N 1.34779 * 120.00164 * 179.71429 * 8 7 6 11 11 C 1.46501 * 120.00349 * 180.02562 * 10 8 7 12 12 H 1.09007 * 112.88355 * 23.65542 * 11 10 8 13 13 C 1.54241 * 113.74643 * 252.22565 * 11 10 8 14 14 C 1.53955 * 87.18863 * 270.24841 * 13 11 10 15 15 H 1.08997 * 113.66205 * 220.75128 * 14 13 11 16 16 N 1.46498 * 113.66415 * 89.78569 * 14 13 11 17 17 C 1.36943 * 119.99752 * 105.73736 * 16 14 13 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 14 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 14 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47213 * 60.00246 * 21 19 17 23 23 H 1.48502 * 109.47317 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47081 * 299.99875 * 21 19 17 25 25 C 1.52905 * 86.88352 * 335.26925 * 14 13 11 26 26 C 1.52914 * 121.14057 * 259.22722 * 25 14 13 27 27 C 1.53950 * 86.78444 * 209.37767 * 26 25 14 28 28 C 1.52911 * 121.13968 * 150.66362 * 25 14 13 29 29 N 1.36597 * 106.23486 * 359.65819 * 7 6 5 30 30 H 0.96996 * 125.19499 * 180.20199 * 29 7 6 31 31 N 1.28452 * 109.62067 * 0.22437 * 29 7 6 32 32 H 1.08994 * 109.47805 * 299.99982 * 1 2 3 33 33 H 1.09001 * 109.47283 * 60.00548 * 1 2 3 34 34 H 1.09007 * 109.47062 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.46976 * 179.97438 * 3 2 1 36 36 H 1.09004 * 109.47278 * 299.99235 * 3 2 1 37 37 H 1.09003 * 109.47348 * 59.99871 * 3 2 1 38 38 H 1.09004 * 109.47325 * 299.99740 * 4 2 1 39 39 H 1.09010 * 109.47387 * 59.99766 * 4 2 1 40 40 H 1.09002 * 109.47278 * 179.97438 * 4 2 1 41 41 H 1.07998 * 127.32253 * 0.06929 * 6 5 2 42 42 H 0.96998 * 119.99782 * 359.97438 * 10 8 7 43 43 H 1.09004 * 113.58278 * 155.69827 * 13 11 10 44 44 H 1.08994 * 113.67408 * 24.81387 * 13 11 10 45 45 H 0.97001 * 120.00384 * 286.02091 * 16 14 13 46 46 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 47 47 H 1.09000 * 113.66024 * 323.85226 * 26 25 14 48 48 H 1.08994 * 113.66194 * 94.90621 * 26 25 14 49 49 H 1.08995 * 113.58271 * 270.13143 * 27 26 25 50 50 H 1.08996 * 113.57661 * 139.32983 * 27 26 25 51 51 H 1.09005 * 113.65882 * 265.09435 * 28 25 14 52 52 H 1.08996 * 113.66010 * 36.14620 * 28 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7103 1.2305 6 6 2.0357 -2.0915 1.4389 7 6 2.5815 -2.2708 2.6981 8 6 2.8037 -3.5502 3.3904 9 8 2.4908 -4.5952 2.8524 10 7 3.3540 -3.5641 4.6206 11 6 3.5756 -4.8378 5.3096 12 1 3.6535 -5.6823 4.6248 13 6 2.6106 -5.0830 6.4876 14 6 3.6449 -4.3766 7.3830 15 1 3.7789 -4.8514 8.3549 16 7 3.4480 -2.9281 7.4788 17 6 2.9316 -2.3815 8.6233 18 1 2.6737 -3.0179 9.4569 19 6 2.7397 -1.0096 8.7120 20 7 3.0536 -0.2342 7.6958 21 14 2.0359 -0.2640 10.2734 22 1 2.9299 -0.5758 11.4174 23 1 1.9298 1.2087 10.1145 24 1 0.6880 -0.8321 10.5293 25 6 4.6952 -4.7862 6.3499 26 6 5.6106 -5.9879 6.5866 27 6 6.6536 -5.2532 5.7250 28 6 5.9496 -3.9424 6.1203 29 7 2.8780 -1.0226 3.1671 30 1 3.2773 -0.8298 4.0297 31 7 2.5468 -0.1429 2.2916 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5137 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 3.1299 1.4426 0.0005 36 1 1.6766 1.9563 -0.8901 37 1 1.6765 1.9564 0.8900 38 1 1.6768 -1.7489 -1.2492 39 1 1.6767 -0.2074 -2.1393 40 1 3.1301 -0.7208 -1.2494 41 1 1.6856 -2.8567 0.7620 42 1 3.6039 -2.7308 5.0495 43 1 2.4742 -6.1375 6.7275 44 1 1.6680 -4.5428 6.4008 45 1 3.6796 -2.3565 6.7300 46 1 2.9198 0.7245 7.7579 47 1 5.9110 -6.1108 7.6271 48 1 5.2449 -6.9115 6.1379 49 1 6.5814 -5.4835 4.6621 50 1 7.6708 -5.3344 6.1081 51 1 5.8545 -3.2319 5.2991 52 1 6.3452 -3.4903 7.0298 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078666748.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:31 Heat of formation + Delta-G solvation = 80.860099 kcal Electronic energy + Delta-G solvation = -31606.672899 eV Core-core repulsion = 27609.051138 eV Total energy + Delta-G solvation = -3997.621761 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.46332 -40.68728 -38.61458 -36.93473 -35.39373 -33.80613 -32.53008 -30.88958 -30.56676 -29.76867 -27.32976 -27.27221 -25.58713 -25.00763 -24.23144 -23.59612 -22.73465 -21.91206 -20.47336 -20.20320 -19.29359 -18.43858 -17.65790 -17.26572 -15.82482 -15.73998 -15.61370 -15.32570 -15.11870 -14.73130 -14.47919 -14.28492 -14.12307 -13.80154 -13.76866 -13.39662 -13.23771 -13.03531 -12.59141 -12.35030 -12.19846 -12.19129 -12.02912 -11.69045 -11.63363 -11.51052 -11.32821 -11.10119 -11.04132 -11.02047 -10.96661 -10.75411 -10.48845 -10.33044 -10.18717 -10.00106 -9.89950 -9.73612 -9.44991 -9.06131 -9.00320 -8.96770 -8.65635 -7.16393 -5.98684 -3.25917 1.42028 2.67090 2.97880 3.16168 3.34163 3.38850 3.39850 3.39987 4.38421 4.42987 4.65028 4.68925 4.81689 4.88863 4.95209 4.96504 5.06526 5.15830 5.22892 5.30323 5.33160 5.50782 5.56265 5.57295 5.62215 5.72690 5.75788 5.77226 5.79419 5.85671 5.86364 5.88906 5.92292 6.02802 6.03318 6.06171 6.09654 6.12461 6.23176 6.27498 6.30875 6.34096 6.50612 6.57596 6.59742 6.65347 6.82490 6.95019 7.12094 7.56182 7.65544 8.13664 8.21970 8.29494 9.32827 9.85841 10.19662 11.24984 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008785 B = 0.003683 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3186.470985 B = 7601.400793 C = 9831.945581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.019 3.981 3 C -0.135 4.135 4 C -0.138 4.138 5 C 0.029 3.971 6 C -0.154 4.154 7 C -0.035 4.035 8 C 0.593 3.407 9 O -0.533 6.533 10 N -0.694 5.694 11 C 0.151 3.849 12 H 0.096 0.904 13 C -0.185 4.185 14 C 0.179 3.821 15 H 0.067 0.933 16 N -0.700 5.700 17 C -0.242 4.242 18 H 0.074 0.926 19 C -0.009 4.009 20 N -0.938 5.938 21 Si 0.911 3.089 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.132 4.132 26 C -0.103 4.103 27 C -0.141 4.141 28 C -0.116 4.116 29 N -0.367 5.367 30 H 0.452 0.548 31 N -0.258 5.258 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.160 0.840 42 H 0.403 0.597 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.376 0.624 46 H 0.258 0.742 47 H 0.086 0.914 48 H 0.066 0.934 49 H 0.074 0.926 50 H 0.063 0.937 51 H 0.059 0.941 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.016 -4.153 -13.266 14.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.017 3.983 3 C -0.193 4.193 4 C -0.196 4.196 5 C -0.128 4.128 6 C -0.183 4.183 7 C -0.164 4.164 8 C 0.378 3.622 9 O -0.408 6.408 10 N -0.346 5.346 11 C 0.046 3.954 12 H 0.114 0.886 13 C -0.227 4.227 14 C 0.067 3.933 15 H 0.085 0.915 16 N -0.339 5.339 17 C -0.373 4.373 18 H 0.092 0.908 19 C -0.205 4.205 20 N -0.586 5.586 21 Si 0.742 3.258 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C -0.134 4.134 26 C -0.141 4.141 27 C -0.179 4.179 28 C -0.154 4.154 29 N -0.084 5.084 30 H 0.299 0.701 31 N -0.092 5.092 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.177 0.823 42 H 0.240 0.760 43 H 0.098 0.902 44 H 0.091 0.909 45 H 0.210 0.790 46 H 0.068 0.932 47 H 0.105 0.895 48 H 0.085 0.915 49 H 0.093 0.907 50 H 0.082 0.918 51 H 0.077 0.923 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.005 -3.805 -12.984 13.678 hybrid contribution -0.282 0.404 1.095 1.201 sum 1.723 -3.400 -11.889 12.485 Atomic orbital electron populations 1.21874 0.93472 1.02283 1.01985 1.18859 0.95300 0.94770 0.89367 1.21773 1.01303 0.94358 1.01845 1.21875 1.01338 1.00444 0.95937 1.21855 1.03826 0.91546 0.95623 1.21879 1.04691 0.96418 0.95323 1.21743 1.10314 0.86722 0.97575 1.16968 0.77611 0.86755 0.80845 1.90789 1.51629 1.31803 1.66592 1.45638 1.62202 1.10315 1.16444 1.21537 0.95813 0.85636 0.92440 0.88622 1.24349 0.99964 1.00853 0.97566 1.21071 0.91082 0.86196 0.94998 0.91504 1.42054 1.75397 0.99678 1.16788 1.19244 1.34375 0.90683 0.92997 0.90840 1.24694 1.01748 0.96026 0.97984 1.69554 1.54072 1.04294 1.30673 0.86212 0.78940 0.78093 0.82603 1.21170 1.21640 1.21218 1.23432 0.93450 0.98357 0.98178 1.22479 0.95418 0.95799 1.00393 1.22861 0.97987 0.97385 0.99650 1.22518 0.95576 0.95744 1.01536 1.43807 1.45168 1.02691 1.16730 0.70121 1.73106 1.16161 1.20006 0.99912 0.92365 0.92092 0.92259 0.92496 0.92630 0.91869 0.92139 0.92064 0.92433 0.82284 0.75951 0.90175 0.90866 0.78982 0.93214 0.89539 0.91516 0.90723 0.91834 0.92273 0.89330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.46 37.16 0.31 -1.07 16 2 C 0.02 0.21 0.97 -155.66 -0.15 0.06 16 3 C -0.14 -1.43 8.04 37.16 0.30 -1.13 16 4 C -0.14 -1.26 8.20 37.15 0.30 -0.96 16 5 C 0.03 0.41 5.65 -82.47 -0.47 -0.05 16 6 C -0.15 -2.28 10.12 -38.98 -0.39 -2.67 16 7 C -0.03 -0.56 7.16 -82.06 -0.59 -1.15 16 8 C 0.59 10.30 7.80 -12.64 -0.10 10.20 16 9 O -0.53 -10.33 16.52 5.26 0.09 -10.24 16 10 N -0.69 -11.55 4.69 -54.38 -0.26 -11.81 16 11 C 0.15 2.43 4.13 -67.33 -0.28 2.15 16 12 H 0.10 1.54 7.46 -51.93 -0.39 1.15 16 13 C -0.19 -3.16 7.71 -25.59 -0.20 -3.36 16 14 C 0.18 3.27 4.35 -67.48 -0.29 2.97 16 15 H 0.07 1.23 8.11 -51.93 -0.42 0.81 16 16 N -0.70 -15.59 4.98 -52.99 -0.26 -15.85 16 17 C -0.24 -6.20 9.97 -15.06 -0.15 -6.35 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 20 N -0.94 -25.52 13.06 55.49 0.72 -24.80 16 21 Si 0.91 21.36 29.55 -169.99 -5.02 16.33 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 25 C -0.13 -1.99 0.78 -154.71 -0.12 -2.11 16 26 C -0.10 -1.28 7.84 -26.28 -0.21 -1.49 16 27 C -0.14 -1.74 8.08 -25.75 -0.21 -1.95 16 28 C -0.12 -1.72 7.24 -26.28 -0.19 -1.91 16 29 N -0.37 -5.79 6.85 33.48 0.23 -5.56 16 30 H 0.45 6.98 8.22 -190.45 -1.57 5.42 16 31 N -0.26 -4.08 11.48 33.64 0.39 -3.69 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 38 H 0.06 0.54 7.59 -51.93 -0.39 0.14 16 39 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.16 2.12 7.78 -52.49 -0.41 1.71 16 42 H 0.40 6.91 5.15 -40.82 -0.21 6.70 16 43 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 45 H 0.38 8.49 5.34 -40.82 -0.22 8.27 16 46 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 47 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 51 H 0.06 0.89 7.58 -51.93 -0.39 0.50 16 52 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 415.86 15.07 6.27 6.27 Total: -1.00 -28.84 415.86 -10.25 -39.09 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: -9.88 Total: 19.39 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -2.52 Total: -9.13 kcal Atomic # 7 Polarization: -62.54 SS G_CDS: 0.82 Total: -61.71 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -28.84 -10.25 -39.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078666748.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.953 kcal (2) G-P(sol) polarization free energy of solvation -28.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds