Wall clock time and date at job start Wed Apr 1 2020 05:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46801 * 2 1 4 4 C 1.52995 * 109.47500 * 239.99991 * 2 1 3 5 5 C 1.50700 * 109.47353 * 119.99660 * 2 1 3 6 6 C 1.39677 * 126.06473 * 75.26622 * 5 2 1 7 7 C 1.38406 * 105.35503 * 180.14828 * 6 5 2 8 8 C 1.47158 * 126.88225 * 179.91198 * 7 6 5 9 9 O 1.21625 * 120.00469 * 359.71966 * 8 7 6 10 10 N 1.34779 * 120.00164 * 179.71429 * 8 7 6 11 11 C 1.46501 * 120.00349 * 180.02562 * 10 8 7 12 12 H 1.09007 * 112.88355 * 23.65542 * 11 10 8 13 13 C 1.54241 * 113.74643 * 252.22565 * 11 10 8 14 14 C 1.53955 * 87.18863 * 270.24841 * 13 11 10 15 15 H 1.08997 * 113.66205 * 220.75128 * 14 13 11 16 16 N 1.46498 * 113.66415 * 89.78569 * 14 13 11 17 17 C 1.36943 * 119.99752 * 105.73736 * 16 14 13 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 14 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 14 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47213 * 60.00246 * 21 19 17 23 23 H 1.48502 * 109.47317 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47081 * 299.99875 * 21 19 17 25 25 C 1.52905 * 86.88352 * 335.26925 * 14 13 11 26 26 C 1.52914 * 121.14057 * 259.22722 * 25 14 13 27 27 C 1.53950 * 86.78444 * 209.37767 * 26 25 14 28 28 C 1.52911 * 121.13968 * 150.66362 * 25 14 13 29 29 N 1.36597 * 106.23486 * 359.65819 * 7 6 5 30 30 H 0.96996 * 125.19499 * 180.20199 * 29 7 6 31 31 N 1.28452 * 109.62067 * 0.22437 * 29 7 6 32 32 H 1.08994 * 109.47805 * 299.99982 * 1 2 3 33 33 H 1.09001 * 109.47283 * 60.00548 * 1 2 3 34 34 H 1.09007 * 109.47062 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.46976 * 179.97438 * 3 2 1 36 36 H 1.09004 * 109.47278 * 299.99235 * 3 2 1 37 37 H 1.09003 * 109.47348 * 59.99871 * 3 2 1 38 38 H 1.09004 * 109.47325 * 299.99740 * 4 2 1 39 39 H 1.09010 * 109.47387 * 59.99766 * 4 2 1 40 40 H 1.09002 * 109.47278 * 179.97438 * 4 2 1 41 41 H 1.07998 * 127.32253 * 0.06929 * 6 5 2 42 42 H 0.96998 * 119.99782 * 359.97438 * 10 8 7 43 43 H 1.09004 * 113.58278 * 155.69827 * 13 11 10 44 44 H 1.08994 * 113.67408 * 24.81387 * 13 11 10 45 45 H 0.97001 * 120.00384 * 286.02091 * 16 14 13 46 46 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 47 47 H 1.09000 * 113.66024 * 323.85226 * 26 25 14 48 48 H 1.08994 * 113.66194 * 94.90621 * 26 25 14 49 49 H 1.08995 * 113.58271 * 270.13143 * 27 26 25 50 50 H 1.08996 * 113.57661 * 139.32983 * 27 26 25 51 51 H 1.09005 * 113.65882 * 265.09435 * 28 25 14 52 52 H 1.08996 * 113.66010 * 36.14620 * 28 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7103 1.2305 6 6 2.0357 -2.0915 1.4389 7 6 2.5815 -2.2708 2.6981 8 6 2.8037 -3.5502 3.3904 9 8 2.4908 -4.5952 2.8524 10 7 3.3540 -3.5641 4.6206 11 6 3.5756 -4.8378 5.3096 12 1 3.6535 -5.6823 4.6248 13 6 2.6106 -5.0830 6.4876 14 6 3.6449 -4.3766 7.3830 15 1 3.7789 -4.8514 8.3549 16 7 3.4480 -2.9281 7.4788 17 6 2.9316 -2.3815 8.6233 18 1 2.6737 -3.0179 9.4569 19 6 2.7397 -1.0096 8.7120 20 7 3.0536 -0.2342 7.6958 21 14 2.0359 -0.2640 10.2734 22 1 2.9299 -0.5758 11.4174 23 1 1.9298 1.2087 10.1145 24 1 0.6880 -0.8321 10.5293 25 6 4.6952 -4.7862 6.3499 26 6 5.6106 -5.9879 6.5866 27 6 6.6536 -5.2532 5.7250 28 6 5.9496 -3.9424 6.1203 29 7 2.8780 -1.0226 3.1671 30 1 3.2773 -0.8298 4.0297 31 7 2.5468 -0.1429 2.2916 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5137 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 3.1299 1.4426 0.0005 36 1 1.6766 1.9563 -0.8901 37 1 1.6765 1.9564 0.8900 38 1 1.6768 -1.7489 -1.2492 39 1 1.6767 -0.2074 -2.1393 40 1 3.1301 -0.7208 -1.2494 41 1 1.6856 -2.8567 0.7620 42 1 3.6039 -2.7308 5.0495 43 1 2.4742 -6.1375 6.7275 44 1 1.6680 -4.5428 6.4008 45 1 3.6796 -2.3565 6.7300 46 1 2.9198 0.7245 7.7579 47 1 5.9110 -6.1108 7.6271 48 1 5.2449 -6.9115 6.1379 49 1 6.5814 -5.4835 4.6621 50 1 7.6708 -5.3344 6.1081 51 1 5.8545 -3.2319 5.2991 52 1 6.3452 -3.4903 7.0298 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078666748.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:30 Heat of formation + Delta-G solvation = 64.724319 kcal Electronic energy + Delta-G solvation = -31607.372598 eV Core-core repulsion = 27609.051138 eV Total energy + Delta-G solvation = -3998.321461 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.66771 -42.00010 -39.97466 -37.83758 -36.75364 -35.45946 -34.06439 -32.13499 -31.96891 -31.32423 -28.14714 -28.05554 -26.85111 -26.51602 -25.45628 -25.13570 -23.89508 -23.22333 -21.75548 -21.47478 -20.64627 -19.48442 -19.22728 -18.78469 -17.19145 -16.95481 -16.88291 -16.79628 -16.29208 -16.16405 -15.74918 -15.59106 -15.44758 -14.94650 -14.80024 -14.77543 -14.62704 -14.37596 -13.95537 -13.41652 -13.26830 -13.19186 -13.07405 -12.94752 -12.89946 -12.75279 -12.59672 -12.49613 -12.32431 -12.24508 -12.01688 -11.98956 -11.88083 -11.86874 -11.53648 -11.37383 -11.29058 -11.08246 -10.85157 -10.70613 -10.33044 -10.16670 -9.98199 -9.01299 -8.00042 -5.25214 0.12921 1.46497 1.47274 1.51893 1.52786 1.73503 1.85497 2.05487 2.52713 3.31237 3.34939 3.37265 3.51528 3.63775 3.77489 3.81477 3.90445 4.00225 4.13400 4.14239 4.21445 4.25758 4.33947 4.43047 4.54630 4.62312 4.65798 4.72414 4.82509 4.85435 4.87228 4.93890 4.96295 4.98429 5.05579 5.08069 5.08754 5.11013 5.15570 5.16651 5.18528 5.27243 5.43860 5.48484 5.50295 5.51017 5.51776 5.58297 5.60736 5.89396 6.23919 6.28646 6.85448 6.98730 7.31693 8.03929 8.27973 9.22841 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008785 B = 0.003683 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3186.470985 B = 7601.400793 C = 9831.945581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.015 3.985 3 C -0.133 4.133 4 C -0.135 4.135 5 C 0.034 3.966 6 C -0.152 4.152 7 C -0.051 4.051 8 C 0.594 3.406 9 O -0.555 6.555 10 N -0.692 5.692 11 C 0.150 3.850 12 H 0.103 0.897 13 C -0.178 4.178 14 C 0.163 3.837 15 H 0.066 0.934 16 N -0.709 5.709 17 C -0.242 4.242 18 H 0.074 0.926 19 C -0.062 4.062 20 N -0.961 5.961 21 Si 0.964 3.036 22 H -0.279 1.279 23 H -0.298 1.298 24 H -0.285 1.285 25 C -0.121 4.121 26 C -0.092 4.092 27 C -0.128 4.128 28 C -0.124 4.124 29 N -0.372 5.372 30 H 0.449 0.551 31 N -0.278 5.278 32 H 0.041 0.959 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.048 0.952 36 H 0.081 0.919 37 H 0.045 0.955 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.051 0.949 41 H 0.175 0.825 42 H 0.400 0.600 43 H 0.108 0.892 44 H 0.042 0.958 45 H 0.371 0.629 46 H 0.251 0.749 47 H 0.096 0.904 48 H 0.086 0.914 49 H 0.080 0.920 50 H 0.080 0.920 51 H 0.049 0.951 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.278 -5.453 -14.414 15.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.014 3.986 3 C -0.190 4.190 4 C -0.192 4.192 5 C -0.124 4.124 6 C -0.181 4.181 7 C -0.180 4.180 8 C 0.380 3.620 9 O -0.432 6.432 10 N -0.342 5.342 11 C 0.046 3.954 12 H 0.121 0.879 13 C -0.219 4.219 14 C 0.052 3.948 15 H 0.084 0.916 16 N -0.348 5.348 17 C -0.374 4.374 18 H 0.092 0.908 19 C -0.255 4.255 20 N -0.611 5.611 21 Si 0.795 3.205 22 H -0.205 1.205 23 H -0.225 1.225 24 H -0.212 1.212 25 C -0.123 4.123 26 C -0.130 4.130 27 C -0.165 4.165 28 C -0.162 4.162 29 N -0.088 5.088 30 H 0.295 0.705 31 N -0.111 5.111 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.070 0.930 41 H 0.192 0.808 42 H 0.237 0.763 43 H 0.126 0.874 44 H 0.061 0.939 45 H 0.205 0.795 46 H 0.060 0.940 47 H 0.114 0.886 48 H 0.104 0.896 49 H 0.099 0.901 50 H 0.099 0.901 51 H 0.068 0.932 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.279 -5.148 -14.117 15.198 hybrid contribution -0.385 0.780 1.443 1.685 sum 1.894 -4.368 -12.674 13.539 Atomic orbital electron populations 1.21870 0.92536 1.02511 1.02461 1.19085 0.95993 0.94867 0.88703 1.21754 1.00764 0.94216 1.02262 1.21866 1.00975 1.00717 0.95677 1.22476 1.02430 0.91521 0.96008 1.22170 1.03916 0.97153 0.94908 1.21767 1.11458 0.86464 0.98281 1.17092 0.77134 0.86884 0.80841 1.90762 1.52785 1.32557 1.67125 1.45675 1.61794 1.10477 1.16296 1.21604 0.95905 0.85520 0.92413 0.87895 1.24282 0.98146 1.01850 0.97658 1.21308 0.93276 0.84146 0.96030 0.91574 1.42135 1.75375 1.01461 1.15822 1.19554 1.33073 0.90874 0.93860 0.90759 1.25325 1.03196 0.96661 1.00363 1.69678 1.55631 1.03845 1.31954 0.85350 0.78301 0.76742 0.80144 1.20538 1.22471 1.21152 1.23363 0.92852 1.00297 0.95815 1.22523 0.93973 0.95296 1.01249 1.22800 0.98739 0.94882 1.00071 1.22525 0.96105 0.96854 1.00678 1.43782 1.45631 1.02633 1.16791 0.70460 1.73119 1.17005 1.20455 1.00568 0.94015 0.89498 0.92170 0.93313 0.90041 0.93597 0.91791 0.89675 0.93026 0.80784 0.76339 0.87404 0.93889 0.79467 0.94001 0.88594 0.89558 0.90120 0.90107 0.93211 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.46 71.98 0.61 -1.89 16 2 C 0.02 0.32 0.97 -52.93 -0.05 0.27 16 3 C -0.13 -2.65 8.04 71.98 0.58 -2.08 16 4 C -0.13 -2.16 8.20 71.98 0.59 -1.57 16 5 C 0.03 0.94 5.65 43.05 0.24 1.18 16 6 C -0.15 -4.46 10.12 22.66 0.23 -4.23 16 7 C -0.05 -1.68 7.16 40.79 0.29 -1.39 16 8 C 0.59 20.90 7.80 86.59 0.68 21.58 16 9 O -0.55 -21.43 16.52 -4.11 -0.07 -21.50 16 10 N -0.69 -23.41 4.69 -444.19 -2.08 -25.49 16 11 C 0.15 4.74 4.13 45.38 0.19 4.92 16 12 H 0.10 3.15 7.46 -2.38 -0.02 3.13 16 13 C -0.18 -5.96 7.71 31.33 0.24 -5.72 16 14 C 0.16 5.89 4.35 45.28 0.20 6.09 16 15 H 0.07 2.39 8.11 -2.39 -0.02 2.37 16 16 N -0.71 -32.13 4.98 -321.56 -1.60 -33.73 16 17 C -0.24 -12.52 9.97 84.03 0.84 -11.68 16 18 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 19 C -0.06 -3.35 5.50 84.86 0.47 -2.88 16 20 N -0.96 -53.71 13.06 21.65 0.28 -53.43 16 21 Si 0.96 44.48 29.55 68.60 2.03 46.51 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 24 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 25 C -0.12 -3.52 0.78 -52.31 -0.04 -3.56 16 26 C -0.09 -2.03 7.84 30.89 0.24 -1.79 16 27 C -0.13 -2.81 8.08 31.23 0.25 -2.56 16 28 C -0.12 -3.59 7.24 30.89 0.22 -3.36 16 29 N -0.37 -12.23 6.85 -48.00 -0.33 -12.56 16 30 H 0.45 14.83 8.22 -220.01 -1.81 13.02 16 31 N -0.28 -9.01 11.48 -47.49 -0.55 -9.55 16 32 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.04 1.07 8.08 -2.39 -0.02 1.05 16 38 H 0.06 0.99 7.59 -2.39 -0.02 0.97 16 39 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.17 4.47 7.78 -2.91 -0.02 4.44 16 42 H 0.40 14.25 5.15 -92.71 -0.48 13.78 16 43 H 0.11 2.99 8.14 -2.38 -0.02 2.97 16 44 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.37 17.32 5.34 -92.71 -0.50 16.82 16 46 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 47 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 51 H 0.05 1.51 7.58 -2.38 -0.02 1.50 16 52 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -62.53 415.86 1.62 -60.91 By element: Atomic # 1 Polarization: 59.34 SS G_CDS: -1.84 Total: 57.50 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 5.77 Total: -8.67 kcal Atomic # 7 Polarization: -130.48 SS G_CDS: -4.28 Total: -134.76 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.07 Total: -21.50 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -62.53 1.62 -60.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078666748.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.638 kcal (2) G-P(sol) polarization free energy of solvation -62.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds