Wall clock time and date at job start Wed Apr 1 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 C 1.50698 * 109.47184 * 240.00631 * 2 1 3 6 6 C 1.39674 * 126.07328 * 74.71016 * 5 2 1 7 7 C 1.38410 * 105.36020 * 179.85423 * 6 5 2 8 8 C 1.47155 * 126.88272 * 180.10902 * 7 6 5 9 9 O 1.21629 * 120.00295 * 0.32417 * 8 7 6 10 10 N 1.34778 * 120.00197 * 180.33549 * 8 7 6 11 11 C 1.46496 * 120.00399 * 179.97438 * 10 8 7 12 12 H 1.09000 * 112.88466 * 25.33042 * 11 10 8 13 13 C 1.53949 * 113.66402 * 253.98440 * 11 10 8 14 14 C 1.54140 * 87.22751 * 220.82348 * 13 11 10 15 15 H 1.09005 * 113.71827 * 139.14603 * 14 13 11 16 16 N 1.46494 * 113.66712 * 270.16865 * 14 13 11 17 17 C 1.36929 * 120.00448 * 252.22591 * 16 14 13 18 18 H 1.08007 * 119.99799 * 359.97438 * 17 16 14 19 19 C 1.38815 * 120.00734 * 179.97438 * 17 16 14 20 20 N 1.31624 * 119.99571 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00364 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46937 * 90.00371 * 21 19 17 23 23 H 1.48495 * 109.47077 * 210.00022 * 21 19 17 24 24 H 1.48497 * 109.47081 * 330.00502 * 21 19 17 25 25 C 1.52912 * 113.66310 * 156.67352 * 11 10 8 26 26 C 1.52903 * 121.13615 * 13.65497 * 25 11 10 27 27 C 1.53953 * 86.78169 * 209.37820 * 26 25 11 28 28 C 1.52910 * 121.13769 * 265.08931 * 25 11 10 29 29 N 1.36595 * 106.23027 * 0.40257 * 7 6 5 30 30 H 0.96997 * 125.19173 * 179.73921 * 29 7 6 31 31 N 1.28444 * 109.62273 * 359.73704 * 29 7 6 32 32 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 33 33 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 35 35 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 36 36 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 37 37 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 38 38 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 39 39 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 40 40 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 41 41 H 1.07997 * 127.31498 * 359.96797 * 6 5 2 42 42 H 0.97006 * 119.99379 * 359.97438 * 10 8 7 43 43 H 1.08996 * 113.57957 * 335.39885 * 13 11 10 44 44 H 1.09002 * 113.58149 * 106.18699 * 13 11 10 45 45 H 0.96999 * 120.00051 * 72.22282 * 16 14 13 46 46 H 0.96998 * 120.00029 * 179.97438 * 20 19 17 47 47 H 1.09002 * 113.66747 * 323.84950 * 26 25 11 48 48 H 1.09005 * 113.66248 * 94.90668 * 26 25 11 49 49 H 1.08996 * 113.57831 * 270.12911 * 27 26 25 50 50 H 1.09002 * 113.57755 * 139.33932 * 27 26 25 51 51 H 1.08996 * 113.66134 * 265.09177 * 28 25 11 52 52 H 1.08996 * 113.66278 * 36.15100 * 28 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 2.0324 -0.7103 -1.2305 6 6 2.0259 -0.2043 -2.5324 7 6 2.5822 -1.2007 -3.3157 8 6 2.8036 -1.1607 -4.7700 9 8 2.4901 -0.1724 -5.4059 10 7 3.3536 -2.2192 -5.3973 11 6 3.5735 -2.1796 -6.8451 12 1 3.6794 -1.1655 -7.2302 13 6 2.5813 -3.0437 -7.6446 14 6 3.7743 -3.4665 -8.5244 15 1 3.7711 -4.5240 -8.7886 16 7 3.9928 -2.5915 -9.6789 17 6 3.6903 -3.0326 -10.9394 18 1 3.2910 -4.0259 -11.0826 19 6 3.8969 -2.2033 -12.0333 20 7 4.3841 -0.9931 -11.8588 21 14 3.4849 -2.8055 -13.7529 22 1 2.0760 -2.4625 -14.0731 23 1 4.3884 -2.1542 -14.7351 24 1 3.6627 -4.2783 -13.8175 25 6 4.6652 -3.1360 -7.3264 26 6 5.2079 -4.2386 -6.4166 27 6 6.5351 -4.0988 -7.1840 28 6 6.1052 -2.6591 -7.5196 29 7 2.8785 -2.2310 -2.4693 30 1 3.2783 -3.0743 -2.7337 31 7 2.5470 -1.9129 -1.2699 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4425 -0.0005 37 1 1.6767 1.9564 -0.8899 38 1 1.6767 -1.7490 1.2492 39 1 3.1301 -0.7209 1.2493 40 1 1.6767 -0.2075 2.1392 41 1 1.6652 0.7601 -2.8582 42 1 3.6038 -3.0073 -4.8900 43 1 2.1532 -3.8631 -7.0673 44 1 1.8289 -2.4629 -8.1782 45 1 4.3518 -1.6996 -9.5503 46 1 4.5288 -0.4137 -12.6232 47 1 5.2757 -3.9471 -5.3685 48 1 4.7198 -5.2028 -6.5588 49 1 6.6045 -4.7478 -8.0569 50 1 7.4163 -4.1529 -6.5446 51 1 6.3339 -2.3616 -8.5430 52 1 6.4252 -1.9237 -6.7816 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078666749.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:36 Heat of formation + Delta-G solvation = 79.495713 kcal Electronic energy + Delta-G solvation = -30646.645958 eV Core-core repulsion = 26648.965033 eV Total energy + Delta-G solvation = -3997.680925 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.81289 -40.63399 -38.80667 -37.19371 -35.13947 -34.24218 -32.56669 -31.24124 -30.89040 -29.59214 -27.54091 -27.50112 -25.62674 -25.07165 -24.26262 -23.55439 -22.99217 -21.99031 -20.75324 -20.45288 -19.30844 -18.71419 -17.70890 -17.08465 -16.23810 -15.98635 -15.94724 -15.34440 -15.21897 -14.81175 -14.58822 -14.40913 -14.19383 -14.01314 -13.90073 -13.63484 -13.11414 -12.75393 -12.62804 -12.54870 -12.42126 -12.26567 -12.03433 -11.91011 -11.72795 -11.59628 -11.47337 -11.35299 -11.27536 -10.94729 -10.89003 -10.81646 -10.75988 -10.21983 -10.17433 -10.03943 -9.94416 -9.63433 -9.58002 -9.38441 -9.30281 -8.91769 -8.75636 -7.05127 -5.83034 -3.13268 1.11041 2.33863 2.54635 3.02642 3.17112 3.40534 3.45591 3.47407 4.11419 4.44145 4.46636 4.57152 4.67864 4.73132 4.80664 4.88369 4.91135 5.04422 5.10047 5.22857 5.30768 5.36270 5.37408 5.39910 5.49307 5.54182 5.57132 5.64789 5.65191 5.70875 5.79862 5.85239 5.86146 5.87872 5.93566 5.96506 6.03732 6.04944 6.08068 6.09029 6.26782 6.33110 6.49526 6.50832 6.62654 6.67988 6.73723 6.79198 6.98603 7.42921 7.65545 7.76539 8.10366 8.34712 9.46055 10.01140 10.35604 11.38787 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019241 B = 0.002185 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.878675 B =12812.002562 C =13584.827800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.017 3.983 3 C -0.140 4.140 4 C -0.134 4.134 5 C 0.039 3.961 6 C -0.150 4.150 7 C -0.031 4.031 8 C 0.584 3.416 9 O -0.515 6.515 10 N -0.711 5.711 11 C 0.139 3.861 12 H 0.117 0.883 13 C -0.182 4.182 14 C 0.198 3.802 15 H 0.069 0.931 16 N -0.699 5.699 17 C -0.246 4.246 18 H 0.072 0.928 19 C -0.009 4.009 20 N -0.928 5.928 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.124 4.124 26 C -0.117 4.117 27 C -0.132 4.132 28 C -0.126 4.126 29 N -0.381 5.381 30 H 0.442 0.558 31 N -0.267 5.267 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.163 0.837 42 H 0.390 0.610 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.387 0.613 46 H 0.257 0.743 47 H 0.071 0.929 48 H 0.069 0.931 49 H 0.082 0.918 50 H 0.059 0.941 51 H 0.084 0.916 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.048 -2.610 25.605 25.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.015 3.985 3 C -0.198 4.198 4 C -0.192 4.192 5 C -0.120 4.120 6 C -0.179 4.179 7 C -0.160 4.160 8 C 0.368 3.632 9 O -0.389 6.389 10 N -0.361 5.361 11 C 0.036 3.964 12 H 0.135 0.865 13 C -0.225 4.225 14 C 0.085 3.915 15 H 0.087 0.913 16 N -0.337 5.337 17 C -0.377 4.377 18 H 0.090 0.910 19 C -0.206 4.206 20 N -0.575 5.575 21 Si 0.739 3.261 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.126 4.126 26 C -0.155 4.155 27 C -0.170 4.170 28 C -0.163 4.163 29 N -0.097 5.097 30 H 0.287 0.713 31 N -0.100 5.100 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.180 0.820 42 H 0.224 0.776 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.222 0.778 46 H 0.067 0.933 47 H 0.089 0.911 48 H 0.087 0.913 49 H 0.101 0.899 50 H 0.078 0.922 51 H 0.103 0.897 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.024 -2.840 25.527 25.764 hybrid contribution 0.015 -0.164 -1.331 1.341 sum -2.009 -3.004 24.196 24.465 Atomic orbital electron populations 1.21879 0.93278 1.02225 1.02245 1.18910 0.95429 0.94267 0.89889 1.21888 1.01410 0.94135 1.02346 1.21766 1.01263 1.00492 0.95669 1.21902 1.02997 0.91683 0.95399 1.22000 1.03878 1.00451 0.91526 1.21915 1.09574 0.91946 0.92522 1.17052 0.78263 0.83758 0.84101 1.90881 1.50408 1.32168 1.65429 1.45991 1.62799 1.17165 1.10143 1.22527 0.96845 1.00519 0.76523 0.86490 1.24349 0.99642 0.99254 0.99214 1.20652 0.90429 0.95033 0.85411 0.91256 1.42107 1.75527 1.15256 1.00825 1.19234 1.36182 0.98853 0.83432 0.90978 1.24774 1.01528 0.96226 0.98041 1.69664 1.50163 1.07729 1.29964 0.86176 0.77716 0.77778 0.84397 1.21630 1.21747 1.20718 1.23635 0.93901 0.96327 0.98779 1.22532 0.97504 0.98094 0.97328 1.22733 0.96046 0.98189 1.00024 1.22638 0.94873 0.95881 1.02916 1.43589 1.46550 1.15504 1.04064 0.71311 1.73059 1.16902 1.17161 1.02887 0.92117 0.92498 0.91892 0.91863 0.92372 0.91973 0.92051 0.92519 0.92450 0.81982 0.77632 0.91248 0.90680 0.77821 0.93330 0.91081 0.91274 0.89914 0.92235 0.89727 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.46 37.16 0.31 -0.69 16 2 C 0.02 0.14 0.96 -155.66 -0.15 -0.01 16 3 C -0.14 -1.00 8.21 37.16 0.30 -0.69 16 4 C -0.13 -1.00 8.04 37.16 0.30 -0.70 16 5 C 0.04 0.41 5.64 -82.47 -0.47 -0.06 16 6 C -0.15 -1.76 10.13 -38.98 -0.39 -2.16 16 7 C -0.03 -0.38 7.16 -82.06 -0.59 -0.96 16 8 C 0.58 8.48 7.80 -12.64 -0.10 8.38 16 9 O -0.52 -9.70 16.54 5.25 0.09 -9.62 16 10 N -0.71 -8.95 5.27 -54.53 -0.29 -9.24 16 11 C 0.14 2.21 4.01 -67.48 -0.27 1.94 16 12 H 0.12 2.27 7.50 -51.93 -0.39 1.88 16 13 C -0.18 -3.09 7.70 -25.65 -0.20 -3.29 16 14 C 0.20 3.69 4.36 -67.38 -0.29 3.40 16 15 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 16 N -0.70 -16.70 4.85 -52.89 -0.26 -16.96 16 17 C -0.25 -6.59 9.97 -15.06 -0.15 -6.74 16 18 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 20 N -0.93 -27.50 13.06 55.49 0.72 -26.77 16 21 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C -0.12 -1.85 0.92 -154.71 -0.14 -1.99 16 26 C -0.12 -1.33 7.15 -26.28 -0.19 -1.52 16 27 C -0.13 -1.69 8.08 -25.75 -0.21 -1.90 16 28 C -0.13 -1.92 7.62 -26.28 -0.20 -2.12 16 29 N -0.38 -3.66 6.85 33.48 0.23 -3.43 16 30 H 0.44 2.81 8.22 -190.46 -1.57 1.25 16 31 N -0.27 -2.86 11.48 33.64 0.39 -2.48 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.45 7.61 -51.93 -0.39 0.05 16 38 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.16 1.82 7.80 -52.49 -0.41 1.41 16 42 H 0.39 3.61 6.16 -40.82 -0.25 3.36 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.39 9.97 7.61 -40.82 -0.31 9.66 16 46 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.07 0.65 6.99 -51.93 -0.36 0.29 16 48 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 50 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.08 1.57 7.58 -51.93 -0.39 1.17 16 52 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 418.28 15.07 6.30 6.30 Total: -1.00 -31.99 418.28 -10.32 -42.31 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -9.96 Total: 12.36 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -2.53 Total: -9.46 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: 0.80 Total: -58.87 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -31.99 -10.32 -42.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078666749.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.806 kcal (2) G-P(sol) polarization free energy of solvation -31.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds