Wall clock time and date at job start Wed Apr 1 2020 05:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 C 1.50698 * 109.47184 * 240.00631 * 2 1 3 6 6 C 1.39674 * 126.07328 * 74.71016 * 5 2 1 7 7 C 1.38410 * 105.36020 * 179.85423 * 6 5 2 8 8 C 1.47155 * 126.88272 * 180.10902 * 7 6 5 9 9 O 1.21629 * 120.00295 * 0.32417 * 8 7 6 10 10 N 1.34778 * 120.00197 * 180.33549 * 8 7 6 11 11 C 1.46496 * 120.00399 * 179.97438 * 10 8 7 12 12 H 1.09000 * 112.88466 * 25.33042 * 11 10 8 13 13 C 1.53949 * 113.66402 * 253.98440 * 11 10 8 14 14 C 1.54140 * 87.22751 * 220.82348 * 13 11 10 15 15 H 1.09005 * 113.71827 * 139.14603 * 14 13 11 16 16 N 1.46494 * 113.66712 * 270.16865 * 14 13 11 17 17 C 1.36929 * 120.00448 * 252.22591 * 16 14 13 18 18 H 1.08007 * 119.99799 * 359.97438 * 17 16 14 19 19 C 1.38815 * 120.00734 * 179.97438 * 17 16 14 20 20 N 1.31624 * 119.99571 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00364 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46937 * 90.00371 * 21 19 17 23 23 H 1.48495 * 109.47077 * 210.00022 * 21 19 17 24 24 H 1.48497 * 109.47081 * 330.00502 * 21 19 17 25 25 C 1.52912 * 113.66310 * 156.67352 * 11 10 8 26 26 C 1.52903 * 121.13615 * 13.65497 * 25 11 10 27 27 C 1.53953 * 86.78169 * 209.37820 * 26 25 11 28 28 C 1.52910 * 121.13769 * 265.08931 * 25 11 10 29 29 N 1.36595 * 106.23027 * 0.40257 * 7 6 5 30 30 H 0.96997 * 125.19173 * 179.73921 * 29 7 6 31 31 N 1.28444 * 109.62273 * 359.73704 * 29 7 6 32 32 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 33 33 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 35 35 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 36 36 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 37 37 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 38 38 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 39 39 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 40 40 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 41 41 H 1.07997 * 127.31498 * 359.96797 * 6 5 2 42 42 H 0.97006 * 119.99379 * 359.97438 * 10 8 7 43 43 H 1.08996 * 113.57957 * 335.39885 * 13 11 10 44 44 H 1.09002 * 113.58149 * 106.18699 * 13 11 10 45 45 H 0.96999 * 120.00051 * 72.22282 * 16 14 13 46 46 H 0.96998 * 120.00029 * 179.97438 * 20 19 17 47 47 H 1.09002 * 113.66747 * 323.84950 * 26 25 11 48 48 H 1.09005 * 113.66248 * 94.90668 * 26 25 11 49 49 H 1.08996 * 113.57831 * 270.12911 * 27 26 25 50 50 H 1.09002 * 113.57755 * 139.33932 * 27 26 25 51 51 H 1.08996 * 113.66134 * 265.09177 * 28 25 11 52 52 H 1.08996 * 113.66278 * 36.15100 * 28 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 2.0324 -0.7103 -1.2305 6 6 2.0259 -0.2043 -2.5324 7 6 2.5822 -1.2007 -3.3157 8 6 2.8036 -1.1607 -4.7700 9 8 2.4901 -0.1724 -5.4059 10 7 3.3536 -2.2192 -5.3973 11 6 3.5735 -2.1796 -6.8451 12 1 3.6794 -1.1655 -7.2302 13 6 2.5813 -3.0437 -7.6446 14 6 3.7743 -3.4665 -8.5244 15 1 3.7711 -4.5240 -8.7886 16 7 3.9928 -2.5915 -9.6789 17 6 3.6903 -3.0326 -10.9394 18 1 3.2910 -4.0259 -11.0826 19 6 3.8969 -2.2033 -12.0333 20 7 4.3841 -0.9931 -11.8588 21 14 3.4849 -2.8055 -13.7529 22 1 2.0760 -2.4625 -14.0731 23 1 4.3884 -2.1542 -14.7351 24 1 3.6627 -4.2783 -13.8175 25 6 4.6652 -3.1360 -7.3264 26 6 5.2079 -4.2386 -6.4166 27 6 6.5351 -4.0988 -7.1840 28 6 6.1052 -2.6591 -7.5196 29 7 2.8785 -2.2310 -2.4693 30 1 3.2783 -3.0743 -2.7337 31 7 2.5470 -1.9129 -1.2699 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4425 -0.0005 37 1 1.6767 1.9564 -0.8899 38 1 1.6767 -1.7490 1.2492 39 1 3.1301 -0.7209 1.2493 40 1 1.6767 -0.2075 2.1392 41 1 1.6652 0.7601 -2.8582 42 1 3.6038 -3.0073 -4.8900 43 1 2.1532 -3.8631 -7.0673 44 1 1.8289 -2.4629 -8.1782 45 1 4.3518 -1.6996 -9.5503 46 1 4.5288 -0.4137 -12.6232 47 1 5.2757 -3.9471 -5.3685 48 1 4.7198 -5.2028 -6.5588 49 1 6.6045 -4.7478 -8.0569 50 1 7.4163 -4.1529 -6.5446 51 1 6.3339 -2.3616 -8.5430 52 1 6.4252 -1.9237 -6.7816 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078666749.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:34 Heat of formation + Delta-G solvation = 58.855821 kcal Electronic energy + Delta-G solvation = -30647.540971 eV Core-core repulsion = 26648.965033 eV Total energy + Delta-G solvation = -3998.575938 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -43.67736 -41.91924 -40.04225 -37.83915 -36.52493 -35.77839 -34.19110 -32.16318 -32.02931 -31.20476 -28.14024 -28.05586 -26.78675 -26.59772 -25.60148 -24.99602 -23.90801 -23.20042 -21.78243 -21.71667 -20.36360 -19.55573 -19.33902 -18.60574 -17.47990 -17.05898 -16.89863 -16.70073 -16.25695 -16.15288 -15.72548 -15.65199 -15.40168 -14.93202 -14.84464 -14.67612 -14.43260 -14.34183 -13.92566 -13.58987 -13.32872 -13.15792 -13.08272 -12.94551 -12.84320 -12.71199 -12.66559 -12.48798 -12.33947 -12.21154 -12.03476 -11.99831 -11.86947 -11.81037 -11.54243 -11.37388 -11.34264 -11.08033 -10.92585 -10.76091 -10.31910 -10.14953 -9.95348 -9.02964 -7.96060 -5.25295 0.12028 1.46122 1.47930 1.48664 1.56058 1.72211 1.94435 2.06796 2.53475 3.32982 3.35271 3.36967 3.49766 3.59848 3.75038 3.81442 3.91639 4.00825 4.13905 4.14446 4.17823 4.22968 4.34915 4.44904 4.54334 4.62011 4.68111 4.73542 4.79354 4.85642 4.86363 4.88052 4.97079 5.00805 5.07570 5.09200 5.10181 5.11905 5.16204 5.20044 5.25974 5.27430 5.35678 5.47923 5.48693 5.50917 5.51926 5.57738 5.66920 5.95297 6.25414 6.37114 6.91359 7.00805 7.31143 8.06808 8.28739 9.27110 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019241 B = 0.002185 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.878675 B =12812.002562 C =13584.827800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.014 3.986 3 C -0.139 4.139 4 C -0.130 4.130 5 C 0.036 3.964 6 C -0.160 4.160 7 C -0.041 4.041 8 C 0.587 3.413 9 O -0.567 6.567 10 N -0.690 5.690 11 C 0.147 3.853 12 H 0.074 0.926 13 C -0.171 4.171 14 C 0.180 3.820 15 H 0.076 0.924 16 N -0.715 5.715 17 C -0.240 4.240 18 H 0.081 0.919 19 C -0.076 4.076 20 N -0.969 5.969 21 Si 0.973 3.027 22 H -0.290 1.290 23 H -0.298 1.298 24 H -0.265 1.265 25 C -0.112 4.112 26 C -0.096 4.096 27 C -0.125 4.125 28 C -0.135 4.135 29 N -0.362 5.362 30 H 0.458 0.542 31 N -0.267 5.267 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.075 0.925 41 H 0.160 0.840 42 H 0.411 0.589 43 H 0.105 0.895 44 H 0.039 0.961 45 H 0.373 0.627 46 H 0.250 0.750 47 H 0.106 0.894 48 H 0.089 0.911 49 H 0.070 0.930 50 H 0.085 0.915 51 H 0.042 0.958 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.109 -5.131 28.692 29.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.012 3.988 3 C -0.196 4.196 4 C -0.188 4.188 5 C -0.121 4.121 6 C -0.189 4.189 7 C -0.170 4.170 8 C 0.373 3.627 9 O -0.444 6.444 10 N -0.341 5.341 11 C 0.043 3.957 12 H 0.092 0.908 13 C -0.213 4.213 14 C 0.069 3.931 15 H 0.094 0.906 16 N -0.352 5.352 17 C -0.372 4.372 18 H 0.099 0.901 19 C -0.268 4.268 20 N -0.620 5.620 21 Si 0.802 3.198 22 H -0.218 1.218 23 H -0.225 1.225 24 H -0.190 1.190 25 C -0.115 4.115 26 C -0.134 4.134 27 C -0.162 4.162 28 C -0.173 4.173 29 N -0.081 5.081 30 H 0.306 0.694 31 N -0.100 5.100 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.094 0.906 41 H 0.177 0.823 42 H 0.249 0.751 43 H 0.123 0.877 44 H 0.058 0.942 45 H 0.205 0.795 46 H 0.059 0.941 47 H 0.124 0.876 48 H 0.108 0.892 49 H 0.089 0.911 50 H 0.103 0.897 51 H 0.060 0.940 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.082 -5.471 28.680 29.271 hybrid contribution 0.015 0.611 -2.193 2.277 sum -2.066 -4.860 26.487 27.008 Atomic orbital electron populations 1.21868 0.92580 1.02022 1.02929 1.19060 0.95966 0.94568 0.89201 1.21888 1.00987 0.93690 1.03080 1.21735 1.00793 1.00259 0.95977 1.22270 1.02583 0.91556 0.95730 1.22162 1.03885 1.00557 0.92316 1.21475 1.11030 0.93200 0.91247 1.17318 0.77307 0.83148 0.84939 1.90865 1.52624 1.34164 1.66768 1.45660 1.62047 1.17667 1.08774 1.22049 0.97111 0.98432 0.78154 0.90769 1.24222 0.98222 0.99902 0.98967 1.20923 0.92689 0.94308 0.85200 0.90642 1.42249 1.75766 1.15417 1.01730 1.19658 1.34025 0.98794 0.84674 0.90128 1.25586 1.02793 0.96611 1.01854 1.69836 1.52611 1.09116 1.30398 0.85143 0.76881 0.77949 0.79803 1.21776 1.22456 1.18995 1.23461 0.92878 0.97539 0.97594 1.22583 0.95455 0.97289 0.98057 1.22686 0.98050 0.95255 1.00249 1.22681 0.95618 0.98227 1.00792 1.43582 1.45710 1.15507 1.03252 0.69449 1.73070 1.16744 1.17220 1.02970 0.92721 0.93107 0.89979 0.89987 0.93020 0.92443 0.92661 0.93173 0.90606 0.82288 0.75078 0.87710 0.94239 0.79546 0.94117 0.87598 0.89209 0.91122 0.89675 0.93959 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.46 71.98 0.61 -1.12 16 2 C 0.01 0.20 0.96 -52.93 -0.05 0.15 16 3 C -0.14 -1.76 8.21 71.98 0.59 -1.17 16 4 C -0.13 -1.63 8.04 71.98 0.58 -1.06 16 5 C 0.04 0.71 5.64 43.05 0.24 0.95 16 6 C -0.16 -3.66 10.13 22.66 0.23 -3.43 16 7 C -0.04 -0.93 7.16 40.79 0.29 -0.64 16 8 C 0.59 16.82 7.80 86.58 0.68 17.50 16 9 O -0.57 -22.21 16.54 -4.12 -0.07 -22.27 16 10 N -0.69 -16.25 5.27 -444.69 -2.34 -18.59 16 11 C 0.15 4.67 4.01 45.28 0.18 4.86 16 12 H 0.07 3.07 7.50 -2.39 -0.02 3.05 16 13 C -0.17 -5.75 7.70 31.30 0.24 -5.51 16 14 C 0.18 6.69 4.36 45.35 0.20 6.89 16 15 H 0.08 2.70 8.10 -2.38 -0.02 2.68 16 16 N -0.71 -35.54 4.85 -321.25 -1.56 -37.10 16 17 C -0.24 -13.14 9.97 84.04 0.84 -12.30 16 18 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 19 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 20 N -0.97 -60.16 13.06 21.65 0.28 -59.88 16 21 Si 0.97 46.32 29.55 68.60 2.03 48.35 16 22 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 23 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 25 C -0.11 -3.23 0.92 -52.31 -0.05 -3.28 16 26 C -0.10 -1.79 7.15 30.88 0.22 -1.57 16 27 C -0.13 -2.85 8.08 31.23 0.25 -2.60 16 28 C -0.14 -4.12 7.62 30.89 0.24 -3.88 16 29 N -0.36 -6.01 6.85 -48.00 -0.33 -6.34 16 30 H 0.46 4.12 8.22 -220.01 -1.81 2.31 16 31 N -0.27 -5.09 11.48 -47.49 -0.55 -5.64 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 0.72 8.14 -2.39 -0.02 0.71 16 36 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.06 0.78 7.61 -2.39 -0.02 0.76 16 38 H 0.05 0.76 8.08 -2.39 -0.02 0.74 16 39 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.16 3.66 7.80 -2.91 -0.02 3.63 16 42 H 0.41 6.05 6.16 -92.70 -0.57 5.48 16 43 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 44 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.37 20.48 7.61 -92.71 -0.71 19.78 16 46 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 47 H 0.11 1.31 6.99 -2.39 -0.02 1.29 16 48 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 49 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 50 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.04 1.64 7.58 -2.39 -0.02 1.63 16 52 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -74.40 418.28 1.08 -73.32 By element: Atomic # 1 Polarization: 40.42 SS G_CDS: -2.14 Total: 38.28 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: 5.75 Total: -10.13 kcal Atomic # 7 Polarization: -123.05 SS G_CDS: -4.49 Total: -127.55 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.07 Total: -22.27 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -74.40 1.08 -73.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078666749.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.176 kcal (2) G-P(sol) polarization free energy of solvation -74.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds