Wall clock time and date at job start Wed Apr 1 2020 05:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.47008 * 2 1 4 4 C 1.50699 * 109.46955 * 180.02562 * 3 2 1 5 5 C 1.38035 * 126.29190 * 269.99778 * 4 3 2 6 6 C 1.47429 * 126.41810 * 359.97438 * 5 4 3 7 7 O 1.21611 * 119.99518 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00283 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99794 * 179.97438 * 8 6 5 10 10 H 1.08996 * 112.95034 * 23.59357 * 9 8 6 11 11 C 1.53951 * 113.66187 * 252.18790 * 9 8 6 12 12 C 1.53949 * 87.29734 * 270.26207 * 11 9 8 13 13 H 1.08999 * 113.66653 * 220.79430 * 12 11 9 14 14 N 1.46503 * 113.74749 * 89.74661 * 12 11 9 15 15 C 1.36940 * 119.99468 * 107.77076 * 14 12 11 16 16 H 1.07999 * 120.00376 * 0.02562 * 15 14 12 17 17 C 1.38813 * 119.99537 * 180.02562 * 15 14 12 18 18 N 1.31617 * 120.00176 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99876 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47096 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47418 * 120.00205 * 19 17 15 22 22 H 1.48504 * 109.46772 * 240.00081 * 19 17 15 23 23 C 1.52903 * 86.78075 * 335.26737 * 12 11 9 24 24 C 1.52910 * 121.13886 * 259.17953 * 23 12 11 25 25 C 1.53950 * 86.78717 * 209.38108 * 24 23 12 26 26 C 1.52917 * 121.14033 * 150.62039 * 23 12 11 27 27 C 1.41289 * 107.17190 * 180.24730 * 5 4 3 28 28 N 1.30451 * 108.02281 * 359.61743 * 27 5 4 29 29 N 1.34258 * 126.28841 * 90.02294 * 4 3 2 30 30 C 1.46497 * 125.75956 * 359.96033 * 29 4 3 31 31 H 1.08996 * 109.46906 * 60.00023 * 1 2 3 32 32 H 1.08993 * 109.46708 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46718 * 299.99796 * 1 2 3 34 34 H 1.09000 * 109.47209 * 240.00236 * 2 1 3 35 35 H 1.08996 * 109.46906 * 119.99977 * 2 1 3 36 36 H 1.09000 * 109.46943 * 60.00073 * 3 2 1 37 37 H 1.09001 * 109.46836 * 299.99894 * 3 2 1 38 38 H 0.96995 * 120.00155 * 0.02562 * 8 6 5 39 39 H 1.09000 * 113.58140 * 155.66191 * 11 9 8 40 40 H 1.08998 * 113.65170 * 24.87681 * 11 9 8 41 41 H 0.96989 * 120.00247 * 287.77734 * 14 12 11 42 42 H 0.97005 * 120.00392 * 179.97438 * 18 17 15 43 43 H 1.09007 * 113.66009 * 323.85167 * 24 23 12 44 44 H 1.09002 * 113.66292 * 94.90250 * 24 23 12 45 45 H 1.09001 * 113.57502 * 270.13001 * 25 24 23 46 46 H 1.08998 * 113.58006 * 139.33297 * 25 24 23 47 47 H 1.09001 * 113.65915 * 265.09197 * 26 23 12 48 48 H 1.08993 * 113.66018 * 36.14110 * 26 23 12 49 49 H 1.08005 * 125.99250 * 179.73904 * 27 5 4 50 50 H 1.09001 * 109.47077 * 89.99251 * 30 29 4 51 51 H 1.08998 * 109.47316 * 209.99807 * 30 29 4 52 52 H 1.08999 * 109.46968 * 330.00065 * 30 29 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.3645 1.4424 1.1116 6 6 3.9270 1.4428 2.5195 7 8 2.7407 1.4438 2.7874 8 7 4.8415 1.4421 3.5094 9 6 4.4065 1.4430 4.9084 10 1 3.4016 1.0425 5.0413 11 6 4.6365 2.7855 5.6260 12 6 6.0259 2.2531 6.0211 13 1 6.3146 2.4995 7.0429 14 7 7.0741 2.5572 5.0438 15 6 8.0258 3.4990 5.3314 16 1 8.0039 4.0171 6.2787 17 6 9.0186 3.7876 4.4052 18 7 9.0450 3.1565 3.2504 19 14 10.3173 5.0716 4.7976 20 1 10.0667 5.6319 6.1499 21 1 11.6619 4.4424 4.7633 22 1 10.2552 6.1620 3.7914 23 6 5.4358 0.8504 5.8715 24 6 5.0007 0.0411 7.0937 25 6 5.3433 -1.2167 6.2748 26 6 6.3100 -0.3358 5.4627 27 6 5.6993 1.4483 0.6483 28 7 5.6738 1.4434 -0.6560 29 7 4.3412 1.4431 -1.0832 30 6 3.8891 1.4431 -2.4766 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 5.7876 1.4417 3.2957 39 1 3.9729 2.9449 6.4759 40 1 4.6730 3.6411 4.9518 41 1 7.0939 2.0917 4.1932 42 1 9.7386 3.3584 2.6030 43 1 5.6414 0.1844 7.9639 44 1 3.9401 0.1363 7.3265 45 1 4.5057 -1.5981 5.6907 46 1 5.8432 -1.9921 6.8552 47 1 6.2952 -0.5417 4.3924 48 1 7.3184 -0.2983 5.8744 49 1 6.5855 1.4537 1.2656 50 1 3.7763 2.4708 -2.8220 51 1 4.6237 0.9298 -3.0970 52 1 2.9307 0.9287 -2.5476 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078667428.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:45 Heat of formation + Delta-G solvation = 87.087632 kcal Electronic energy + Delta-G solvation = -31914.110326 eV Core-core repulsion = 27916.758612 eV Total energy + Delta-G solvation = -3997.351715 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -41.36847 -40.43661 -38.19370 -35.41818 -35.11562 -33.53794 -33.24707 -32.07806 -30.56760 -29.76511 -27.29256 -26.50486 -25.40707 -24.56487 -24.01552 -23.11473 -21.96312 -21.70337 -20.30517 -19.94409 -19.52266 -18.11884 -17.09334 -17.06142 -15.78018 -15.68587 -15.47159 -15.20042 -15.01841 -14.63347 -14.49773 -14.25550 -14.05104 -13.84590 -13.57591 -13.14195 -12.98281 -12.93254 -12.68754 -12.60321 -12.44823 -12.31462 -12.02624 -11.83878 -11.54290 -11.47106 -11.39284 -11.33996 -10.94773 -10.93430 -10.83138 -10.61212 -10.52948 -10.16364 -10.03088 -9.77100 -9.69296 -9.37521 -9.27182 -9.26432 -8.83930 -8.58377 -8.25237 -7.00655 -5.83875 -3.11197 1.65392 2.41529 2.45345 3.41390 3.47737 3.49561 3.63440 3.82203 4.44098 4.47993 4.54986 4.79551 4.83020 4.91086 4.98567 5.02718 5.05452 5.12755 5.19613 5.23157 5.24374 5.28015 5.39781 5.46669 5.48380 5.60791 5.66431 5.68829 5.72937 5.86279 5.92088 5.95105 5.96431 6.05340 6.09327 6.14967 6.18226 6.18783 6.23998 6.35603 6.42486 6.48854 6.64679 6.69778 6.77962 6.81539 6.92441 7.03261 7.21717 7.69458 7.72235 8.09187 8.36313 8.74585 9.47057 10.02296 10.36163 11.39169 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009308 B = 0.003911 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3007.325528 B = 7157.124783 C = 9273.138486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.063 4.063 4 C 0.153 3.847 5 C -0.291 4.291 6 C 0.599 3.401 7 O -0.560 6.560 8 N -0.695 5.695 9 C 0.156 3.844 10 H 0.091 0.909 11 C -0.187 4.187 12 C 0.180 3.820 13 H 0.065 0.935 14 N -0.699 5.699 15 C -0.240 4.240 16 H 0.073 0.927 17 C -0.009 4.009 18 N -0.932 5.932 19 Si 0.907 3.093 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.133 4.133 24 C -0.104 4.104 25 C -0.141 4.141 26 C -0.115 4.115 27 C 0.096 3.904 28 N -0.298 5.298 29 N -0.368 5.368 30 C 0.098 3.902 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.070 0.930 38 H 0.406 0.594 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.379 0.621 42 H 0.256 0.744 43 H 0.084 0.916 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.086 0.914 49 H 0.198 0.802 50 H 0.076 0.924 51 H 0.092 0.908 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.436 -8.208 -5.929 17.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.102 4.102 4 C 0.021 3.979 5 C -0.306 4.306 6 C 0.387 3.613 7 O -0.441 6.441 8 N -0.346 5.346 9 C 0.050 3.950 10 H 0.109 0.891 11 C -0.229 4.229 12 C 0.067 3.933 13 H 0.083 0.917 14 N -0.339 5.339 15 C -0.371 4.371 16 H 0.091 0.909 17 C -0.206 4.206 18 N -0.580 5.580 19 Si 0.738 3.262 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.136 4.136 24 C -0.142 4.142 25 C -0.179 4.179 26 C -0.153 4.153 27 C -0.092 4.092 28 N -0.117 5.117 29 N -0.147 5.147 30 C -0.044 4.044 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.130 0.870 37 H 0.089 0.911 38 H 0.244 0.756 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.214 0.786 42 H 0.066 0.934 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.105 0.895 49 H 0.214 0.786 50 H 0.095 0.905 51 H 0.110 0.890 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.408 -8.061 -6.929 17.905 hybrid contribution 0.946 0.753 0.319 1.251 sum -13.462 -7.309 -6.610 16.683 Atomic orbital electron populations 1.21736 0.95163 1.01705 1.02003 1.21387 0.96079 0.95165 1.02328 1.20512 0.86027 0.98935 1.04687 1.21422 0.94344 0.95787 0.86395 1.20026 0.92904 1.24080 0.93568 1.17136 0.85330 0.75189 0.83634 1.90666 1.16535 1.52485 1.84379 1.45498 1.10147 1.74024 1.04906 1.21358 0.96928 0.97124 0.79602 0.89058 1.24296 1.01215 0.97315 1.00082 1.21039 0.87680 0.90566 0.93973 0.91733 1.42086 1.28732 1.46280 1.16775 1.19313 1.03692 1.13292 1.00813 0.90912 1.24695 0.99290 1.00125 0.96441 1.69601 1.35996 1.44781 1.07612 0.86120 0.81614 0.81056 0.77380 1.20593 1.21897 1.21935 1.23462 0.97491 0.95830 0.96789 1.22477 1.00781 0.95055 0.95870 1.22856 0.99679 0.96393 0.98958 1.22500 0.98200 0.94792 0.99792 1.24314 0.97686 0.95362 0.91863 1.77254 0.95241 1.25635 1.13562 1.48353 1.04379 1.55936 1.06036 1.21889 1.01021 1.03580 0.77861 0.92978 0.92659 0.92043 0.92743 0.90894 0.86987 0.91107 0.75572 0.90579 0.90999 0.78592 0.93412 0.89742 0.91705 0.90804 0.92042 0.91987 0.89525 0.78560 0.90535 0.88971 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.90 16 2 C -0.11 -1.15 5.92 -26.72 -0.16 -1.31 16 3 C -0.06 -0.73 4.67 -27.88 -0.13 -0.86 16 4 C 0.15 2.21 6.26 -81.61 -0.51 1.70 16 5 C -0.29 -4.91 6.13 -105.07 -0.64 -5.56 16 6 C 0.60 10.79 7.81 -12.52 -0.10 10.69 16 7 O -0.56 -10.68 14.44 5.27 0.08 -10.60 16 8 N -0.69 -12.34 4.68 -54.44 -0.25 -12.60 16 9 C 0.16 2.65 4.12 -67.48 -0.28 2.37 16 10 H 0.09 1.56 7.46 -51.93 -0.39 1.17 16 11 C -0.19 -3.36 7.69 -25.75 -0.20 -3.56 16 12 C 0.18 3.46 4.36 -67.48 -0.29 3.16 16 13 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 14 N -0.70 -16.30 4.98 -52.99 -0.26 -16.56 16 15 C -0.24 -6.35 9.97 -15.06 -0.15 -6.50 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 17 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 18 N -0.93 -26.30 13.06 55.49 0.72 -25.58 16 19 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 C -0.13 -2.14 0.78 -154.71 -0.12 -2.26 16 24 C -0.10 -1.38 7.84 -26.28 -0.21 -1.59 16 25 C -0.14 -1.86 8.08 -25.75 -0.21 -2.06 16 26 C -0.12 -1.82 7.27 -26.28 -0.19 -2.01 16 27 C 0.10 1.65 11.50 -16.98 -0.20 1.46 16 28 N -0.30 -5.01 12.50 30.86 0.39 -4.63 16 29 N -0.37 -5.05 3.98 -63.35 -0.25 -5.30 16 30 C 0.10 0.83 11.06 59.85 0.66 1.49 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.11 1.53 6.50 -51.93 -0.34 1.19 16 37 H 0.07 0.64 7.69 -51.93 -0.40 0.24 16 38 H 0.41 7.60 4.90 -40.82 -0.20 7.40 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 41 H 0.38 9.04 5.34 -40.82 -0.22 8.82 16 42 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.06 1.01 7.58 -51.93 -0.39 0.62 16 48 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 49 H 0.20 3.42 7.50 -52.48 -0.39 3.03 16 50 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 52 H 0.09 0.52 7.62 -51.93 -0.40 0.13 16 LS Contribution 416.22 15.07 6.27 6.27 Total: -1.00 -31.01 416.22 -9.40 -40.41 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: -8.61 Total: 17.82 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -2.45 Total: -6.08 kcal Atomic # 7 Polarization: -65.00 SS G_CDS: 0.34 Total: -64.66 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -31.01 -9.40 -40.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078667428.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.496 kcal (2) G-P(sol) polarization free energy of solvation -31.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds