Wall clock time and date at job start Wed Apr 1 2020 05:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.47008 * 2 1 4 4 C 1.50699 * 109.46955 * 180.02562 * 3 2 1 5 5 C 1.38035 * 126.29190 * 269.99778 * 4 3 2 6 6 C 1.47429 * 126.41810 * 359.97438 * 5 4 3 7 7 O 1.21611 * 119.99518 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00283 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99794 * 179.97438 * 8 6 5 10 10 H 1.08996 * 112.95034 * 23.59357 * 9 8 6 11 11 C 1.53951 * 113.66187 * 252.18790 * 9 8 6 12 12 C 1.53949 * 87.29734 * 270.26207 * 11 9 8 13 13 H 1.08999 * 113.66653 * 220.79430 * 12 11 9 14 14 N 1.46503 * 113.74749 * 89.74661 * 12 11 9 15 15 C 1.36940 * 119.99468 * 107.77076 * 14 12 11 16 16 H 1.07999 * 120.00376 * 0.02562 * 15 14 12 17 17 C 1.38813 * 119.99537 * 180.02562 * 15 14 12 18 18 N 1.31617 * 120.00176 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99876 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47096 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47418 * 120.00205 * 19 17 15 22 22 H 1.48504 * 109.46772 * 240.00081 * 19 17 15 23 23 C 1.52903 * 86.78075 * 335.26737 * 12 11 9 24 24 C 1.52910 * 121.13886 * 259.17953 * 23 12 11 25 25 C 1.53950 * 86.78717 * 209.38108 * 24 23 12 26 26 C 1.52917 * 121.14033 * 150.62039 * 23 12 11 27 27 C 1.41289 * 107.17190 * 180.24730 * 5 4 3 28 28 N 1.30451 * 108.02281 * 359.61743 * 27 5 4 29 29 N 1.34258 * 126.28841 * 90.02294 * 4 3 2 30 30 C 1.46497 * 125.75956 * 359.96033 * 29 4 3 31 31 H 1.08996 * 109.46906 * 60.00023 * 1 2 3 32 32 H 1.08993 * 109.46708 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46718 * 299.99796 * 1 2 3 34 34 H 1.09000 * 109.47209 * 240.00236 * 2 1 3 35 35 H 1.08996 * 109.46906 * 119.99977 * 2 1 3 36 36 H 1.09000 * 109.46943 * 60.00073 * 3 2 1 37 37 H 1.09001 * 109.46836 * 299.99894 * 3 2 1 38 38 H 0.96995 * 120.00155 * 0.02562 * 8 6 5 39 39 H 1.09000 * 113.58140 * 155.66191 * 11 9 8 40 40 H 1.08998 * 113.65170 * 24.87681 * 11 9 8 41 41 H 0.96989 * 120.00247 * 287.77734 * 14 12 11 42 42 H 0.97005 * 120.00392 * 179.97438 * 18 17 15 43 43 H 1.09007 * 113.66009 * 323.85167 * 24 23 12 44 44 H 1.09002 * 113.66292 * 94.90250 * 24 23 12 45 45 H 1.09001 * 113.57502 * 270.13001 * 25 24 23 46 46 H 1.08998 * 113.58006 * 139.33297 * 25 24 23 47 47 H 1.09001 * 113.65915 * 265.09197 * 26 23 12 48 48 H 1.08993 * 113.66018 * 36.14110 * 26 23 12 49 49 H 1.08005 * 125.99250 * 179.73904 * 27 5 4 50 50 H 1.09001 * 109.47077 * 89.99251 * 30 29 4 51 51 H 1.08998 * 109.47316 * 209.99807 * 30 29 4 52 52 H 1.08999 * 109.46968 * 330.00065 * 30 29 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.3645 1.4424 1.1116 6 6 3.9270 1.4428 2.5195 7 8 2.7407 1.4438 2.7874 8 7 4.8415 1.4421 3.5094 9 6 4.4065 1.4430 4.9084 10 1 3.4016 1.0425 5.0413 11 6 4.6365 2.7855 5.6260 12 6 6.0259 2.2531 6.0211 13 1 6.3146 2.4995 7.0429 14 7 7.0741 2.5572 5.0438 15 6 8.0258 3.4990 5.3314 16 1 8.0039 4.0171 6.2787 17 6 9.0186 3.7876 4.4052 18 7 9.0450 3.1565 3.2504 19 14 10.3173 5.0716 4.7976 20 1 10.0667 5.6319 6.1499 21 1 11.6619 4.4424 4.7633 22 1 10.2552 6.1620 3.7914 23 6 5.4358 0.8504 5.8715 24 6 5.0007 0.0411 7.0937 25 6 5.3433 -1.2167 6.2748 26 6 6.3100 -0.3358 5.4627 27 6 5.6993 1.4483 0.6483 28 7 5.6738 1.4434 -0.6560 29 7 4.3412 1.4431 -1.0832 30 6 3.8891 1.4431 -2.4766 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 5.7876 1.4417 3.2957 39 1 3.9729 2.9449 6.4759 40 1 4.6730 3.6411 4.9518 41 1 7.0939 2.0917 4.1932 42 1 9.7386 3.3584 2.6030 43 1 5.6414 0.1844 7.9639 44 1 3.9401 0.1363 7.3265 45 1 4.5057 -1.5981 5.6907 46 1 5.8432 -1.9921 6.8552 47 1 6.2952 -0.5417 4.3924 48 1 7.3184 -0.2983 5.8744 49 1 6.5855 1.4537 1.2656 50 1 3.7763 2.4708 -2.8220 51 1 4.6237 0.9298 -3.0970 52 1 2.9307 0.9287 -2.5476 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078667428.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:43 Heat of formation + Delta-G solvation = 69.191540 kcal Electronic energy + Delta-G solvation = -31914.886359 eV Core-core repulsion = 27916.758612 eV Total energy + Delta-G solvation = -3998.127748 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.57732 -41.79874 -39.57441 -36.68082 -36.23921 -35.22686 -34.35880 -33.59223 -31.80285 -31.44502 -28.34591 -27.40353 -26.77595 -26.14646 -25.33150 -24.67410 -23.23903 -22.66758 -21.62458 -21.20131 -20.80230 -19.60905 -18.82496 -18.33946 -16.95590 -16.86679 -16.77573 -16.65282 -16.22578 -15.98077 -15.76528 -15.58984 -15.38202 -15.30812 -14.80140 -14.50513 -14.36366 -14.03913 -13.89787 -13.56675 -13.51481 -13.27531 -13.19197 -13.11906 -13.08213 -12.89511 -12.69675 -12.50011 -12.42904 -12.16805 -12.10439 -11.94809 -11.92132 -11.79403 -11.52722 -11.29199 -11.10869 -10.78874 -10.74418 -10.61128 -10.39698 -9.93625 -9.55288 -8.93605 -7.92234 -5.18287 0.48171 1.09472 1.41175 1.47752 1.49242 1.57819 2.26888 2.45260 2.58122 3.40538 3.42760 3.45638 3.49916 3.72999 3.85133 3.88496 3.98652 4.02094 4.08761 4.11586 4.19641 4.25290 4.33970 4.37195 4.40812 4.49960 4.59911 4.62722 4.65024 4.70007 4.78614 4.84542 4.88406 4.93359 4.98804 4.99962 5.05994 5.14252 5.15505 5.20161 5.24823 5.27573 5.34365 5.35701 5.44190 5.56401 5.58231 5.67967 5.77543 5.91318 6.31026 6.47332 6.65911 7.31503 7.38395 8.12579 8.36351 9.30547 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009308 B = 0.003911 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3007.325528 B = 7157.124783 C = 9273.138486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C -0.058 4.058 4 C 0.164 3.836 5 C -0.322 4.322 6 C 0.596 3.404 7 O -0.574 6.574 8 N -0.698 5.698 9 C 0.157 3.843 10 H 0.098 0.902 11 C -0.179 4.179 12 C 0.164 3.836 13 H 0.064 0.936 14 N -0.709 5.709 15 C -0.240 4.240 16 H 0.074 0.926 17 C -0.066 4.066 18 N -0.959 5.959 19 Si 0.965 3.035 20 H -0.269 1.269 21 H -0.295 1.295 22 H -0.300 1.300 23 C -0.124 4.124 24 C -0.093 4.093 25 C -0.126 4.126 26 C -0.123 4.123 27 C 0.083 3.917 28 N -0.321 5.321 29 N -0.358 5.358 30 C 0.082 3.918 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.400 0.600 39 H 0.104 0.896 40 H 0.040 0.960 41 H 0.373 0.627 42 H 0.250 0.750 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.049 0.951 48 H 0.071 0.929 49 H 0.182 0.818 50 H 0.094 0.906 51 H 0.101 0.899 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.608 -8.937 -6.157 19.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 C -0.097 4.097 4 C 0.029 3.971 5 C -0.336 4.336 6 C 0.386 3.614 7 O -0.456 6.456 8 N -0.347 5.347 9 C 0.051 3.949 10 H 0.116 0.884 11 C -0.221 4.221 12 C 0.053 3.947 13 H 0.082 0.918 14 N -0.348 5.348 15 C -0.371 4.371 16 H 0.092 0.908 17 C -0.259 4.259 18 N -0.609 5.609 19 Si 0.795 3.205 20 H -0.194 1.194 21 H -0.222 1.222 22 H -0.227 1.227 23 C -0.126 4.126 24 C -0.130 4.130 25 C -0.164 4.164 26 C -0.161 4.161 27 C -0.104 4.104 28 N -0.141 5.141 29 N -0.136 5.136 30 C -0.056 4.056 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.109 0.891 37 H 0.125 0.875 38 H 0.237 0.763 39 H 0.122 0.878 40 H 0.059 0.941 41 H 0.208 0.792 42 H 0.059 0.941 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.067 0.933 48 H 0.089 0.911 49 H 0.199 0.801 50 H 0.112 0.888 51 H 0.119 0.881 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.605 -8.797 -7.131 20.099 hybrid contribution 1.557 0.988 0.332 1.874 sum -15.048 -7.809 -6.799 18.266 Atomic orbital electron populations 1.21707 0.93496 1.02481 1.02475 1.21344 0.97412 0.93924 1.01751 1.20602 0.83732 1.00029 1.05354 1.21841 0.95603 0.93805 0.85821 1.20099 0.93239 1.26467 0.93820 1.17344 0.85142 0.74767 0.84191 1.90640 1.16839 1.53426 1.84718 1.45570 1.09751 1.73989 1.05423 1.21393 0.97456 0.96622 0.79407 0.88448 1.24227 1.00808 0.96530 1.00495 1.21276 0.87206 0.93273 0.92896 0.91755 1.42189 1.29341 1.45843 1.17468 1.19628 1.03855 1.13154 1.00498 0.90781 1.25370 1.01454 1.02341 0.96688 1.69742 1.36549 1.46283 1.08349 0.85201 0.79227 0.78739 0.77325 1.19362 1.22199 1.22719 1.23403 0.96798 0.94166 0.98244 1.22513 1.02213 0.93567 0.94754 1.22785 0.98822 0.96510 0.98246 1.22498 0.98083 0.96019 0.99498 1.24118 0.97651 0.96399 0.92273 1.77156 0.97498 1.26272 1.13136 1.48740 1.03099 1.54045 1.07751 1.22422 1.02793 1.05426 0.75007 0.90822 0.91771 0.93246 0.91016 0.93802 0.89111 0.87546 0.76340 0.87771 0.94114 0.79244 0.94118 0.88738 0.89687 0.90210 0.90163 0.93268 0.91076 0.80150 0.88802 0.88060 0.86143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.91 71.98 0.71 -1.38 16 2 C -0.11 -1.99 5.92 30.60 0.18 -1.81 16 3 C -0.06 -1.25 4.67 29.85 0.14 -1.11 16 4 C 0.16 4.64 6.26 42.14 0.26 4.90 16 5 C -0.32 -11.27 6.13 -20.15 -0.12 -11.39 16 6 C 0.60 22.32 7.81 86.66 0.68 22.99 16 7 O -0.57 -22.33 14.44 -4.07 -0.06 -22.39 16 8 N -0.70 -25.92 4.68 -444.41 -2.08 -28.00 16 9 C 0.16 5.35 4.12 45.28 0.19 5.53 16 10 H 0.10 3.24 7.46 -2.39 -0.02 3.22 16 11 C -0.18 -6.44 7.69 31.23 0.24 -6.20 16 12 C 0.16 6.35 4.36 45.28 0.20 6.55 16 13 H 0.06 2.47 8.10 -2.39 -0.02 2.45 16 14 N -0.71 -34.16 4.98 -321.56 -1.60 -35.76 16 15 C -0.24 -12.93 9.97 84.03 0.84 -12.09 16 16 H 0.07 3.90 7.83 -2.91 -0.02 3.87 16 17 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 18 N -0.96 -56.23 13.06 21.65 0.28 -55.95 16 19 Si 0.96 45.90 29.55 68.60 2.03 47.93 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 22 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 23 C -0.12 -3.92 0.78 -52.31 -0.04 -3.96 16 24 C -0.09 -2.23 7.84 30.88 0.24 -1.99 16 25 C -0.13 -3.05 8.08 31.23 0.25 -2.80 16 26 C -0.12 -3.90 7.27 30.89 0.22 -3.68 16 27 C 0.08 3.04 11.50 85.65 0.99 4.02 16 28 N -0.32 -11.03 12.50 -56.27 -0.70 -11.73 16 29 N -0.36 -9.42 3.98 -354.33 -1.41 -10.83 16 30 C 0.08 1.16 11.06 127.77 1.41 2.58 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.09 2.42 6.50 -2.39 -0.02 2.40 16 37 H 0.11 1.52 7.69 -2.39 -0.02 1.50 16 38 H 0.40 16.04 4.90 -92.71 -0.45 15.59 16 39 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 40 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.37 18.75 5.34 -92.72 -0.49 18.25 16 42 H 0.25 14.41 8.31 -92.70 -0.77 13.64 16 43 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 44 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.05 1.66 7.58 -2.39 -0.02 1.65 16 48 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 49 H 0.18 7.01 7.50 -2.91 -0.02 6.99 16 50 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 52 H 0.12 0.92 7.62 -2.39 -0.02 0.90 16 Total: -1.00 -69.67 416.22 3.29 -66.38 By element: Atomic # 1 Polarization: 53.40 SS G_CDS: -0.02 Total: 53.38 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 6.86 Total: -3.02 kcal Atomic # 7 Polarization: -136.76 SS G_CDS: -5.51 Total: -142.28 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.06 Total: -22.39 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -69.67 3.29 -66.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078667428.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.573 kcal (2) G-P(sol) polarization free energy of solvation -69.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds