Wall clock time and date at job start Wed Apr 1 2020 05:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47003 * 2 1 4 4 C 1.50694 * 109.47354 * 120.00247 * 2 1 3 5 5 N 1.30446 * 125.98934 * 300.02636 * 4 2 1 6 6 N 1.39938 * 108.89698 * 179.97438 * 5 4 2 7 7 C 1.46503 * 125.75336 * 179.97438 * 6 5 4 8 8 C 1.34264 * 108.49015 * 359.74885 * 6 5 4 9 9 C 1.38039 * 107.41497 * 0.39377 * 8 6 5 10 10 C 1.47436 * 126.41198 * 179.87051 * 9 8 6 11 11 O 1.21601 * 119.99996 * 179.69012 * 10 9 8 12 12 N 1.34777 * 119.99977 * 359.68701 * 10 9 8 13 13 C 1.46496 * 120.00258 * 179.97438 * 12 10 9 14 14 H 1.08999 * 112.88327 * 23.65615 * 13 12 10 15 15 C 1.53950 * 113.66605 * 252.19253 * 13 12 10 16 16 C 1.53948 * 87.29538 * 220.79257 * 15 13 12 17 17 H 1.08997 * 113.66417 * 270.26043 * 16 15 13 18 18 N 1.46504 * 113.74782 * 139.21428 * 16 15 13 19 19 C 1.36937 * 119.99958 * 107.76857 * 18 16 15 20 20 H 1.08002 * 119.99673 * 0.02562 * 19 18 16 21 21 C 1.38811 * 120.00065 * 179.97438 * 19 18 16 22 22 N 1.31619 * 119.99818 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99929 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47367 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47064 * 120.00524 * 23 21 19 26 26 H 1.48505 * 109.47131 * 240.00204 * 23 21 19 27 27 C 1.52904 * 113.66542 * 155.00124 * 13 12 10 28 28 C 1.52909 * 121.13386 * 13.65483 * 27 13 12 29 29 C 1.53955 * 86.78067 * 209.37742 * 28 27 13 30 30 C 1.52911 * 121.13926 * 265.09282 * 27 13 12 31 31 H 1.08997 * 109.47761 * 59.99618 * 1 2 3 32 32 H 1.09003 * 109.47114 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47058 * 299.99645 * 1 2 3 34 34 H 1.08999 * 109.46800 * 240.00840 * 2 1 3 35 35 H 1.09002 * 109.46990 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.47629 * 300.00464 * 3 2 1 37 37 H 1.09008 * 109.46933 * 60.00249 * 3 2 1 38 38 H 1.08997 * 109.46895 * 89.97767 * 7 6 5 39 39 H 1.08996 * 109.47034 * 209.97394 * 7 6 5 40 40 H 1.08996 * 109.47005 * 329.97829 * 7 6 5 41 41 H 1.07997 * 126.28930 * 180.24532 * 8 6 5 42 42 H 0.96999 * 120.00047 * 0.02562 * 12 10 9 43 43 H 1.08996 * 113.57700 * 335.39310 * 15 13 12 44 44 H 1.08998 * 113.58075 * 106.18804 * 15 13 12 45 45 H 0.96995 * 119.99669 * 287.77232 * 18 16 15 46 46 H 0.97001 * 120.00076 * 179.97438 * 22 21 19 47 47 H 1.08993 * 113.66566 * 323.84811 * 28 27 13 48 48 H 1.08997 * 113.66104 * 94.91283 * 28 27 13 49 49 H 1.08999 * 113.58130 * 270.12908 * 29 28 27 50 50 H 1.09007 * 113.57633 * 139.34040 * 29 28 27 51 51 H 1.08995 * 113.66388 * 265.09141 * 30 27 13 52 52 H 1.09004 * 113.65971 * 36.14659 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7900 -0.3685 2.4656 6 7 2.4294 -1.2735 3.3202 7 6 2.4015 -1.2341 4.7845 8 6 3.0687 -2.1867 2.5720 9 6 2.8480 -1.8640 1.2481 10 6 3.3618 -2.5908 0.0727 11 8 3.0890 -2.2049 -1.0477 12 7 4.1339 -3.6827 0.2401 13 6 4.6440 -4.4052 -0.9277 14 1 4.6971 -3.7830 -1.8211 15 6 3.9616 -5.7656 -1.1594 16 6 5.3539 -6.3225 -1.5077 17 1 5.6060 -6.2404 -2.5649 18 7 5.6079 -7.6588 -0.9635 19 6 5.6361 -8.7440 -1.7982 20 1 5.4716 -8.6146 -2.8578 21 6 5.8773 -10.0101 -1.2827 22 7 6.0782 -10.1675 0.0085 23 14 5.9165 -11.4903 -2.4215 24 1 5.6637 -11.0484 -3.8165 25 1 7.2493 -12.1404 -2.3424 26 1 4.8683 -12.4587 -2.0108 27 6 5.9254 -5.1922 -0.6510 28 6 6.4030 -5.4478 0.7789 29 6 7.8321 -5.4630 0.2065 30 6 7.3008 -4.5934 -0.9474 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5137 -0.8901 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6766 1.9563 0.8901 38 1 1.5551 -1.8171 5.1475 39 1 3.3274 -1.6547 5.1769 40 1 2.3013 -0.2014 5.1183 41 1 3.6509 -3.0193 2.9385 42 1 4.3512 -3.9907 1.1339 43 1 3.5328 -6.1978 -0.2553 44 1 3.2682 -5.7679 -2.0004 45 1 5.7559 -7.7748 -0.0119 46 1 6.2464 -11.0523 0.3688 47 1 6.2129 -4.6174 1.4587 48 1 6.0830 -6.4088 1.1818 49 1 8.1646 -6.4516 -0.1099 50 1 8.5600 -4.9529 0.8376 51 1 7.6979 -4.8716 -1.9236 52 1 7.3629 -3.5226 -0.7528 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078810195.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:34 Heat of formation + Delta-G solvation = 65.999376 kcal Electronic energy + Delta-G solvation = -31056.914562 eV Core-core repulsion = 27058.648392 eV Total energy + Delta-G solvation = -3998.266170 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.49827 -41.72443 -39.65153 -36.79096 -36.22378 -35.60964 -34.09587 -33.30116 -31.95573 -30.94767 -28.02184 -27.89925 -26.76886 -26.38214 -25.49691 -24.58520 -23.26629 -22.96822 -21.77056 -21.10544 -20.15542 -19.60421 -18.99235 -18.21188 -17.36972 -17.02372 -16.67442 -16.38518 -16.29841 -15.99916 -15.62828 -15.53712 -15.47710 -15.18188 -14.80650 -14.35026 -14.28236 -14.05004 -13.77450 -13.50312 -13.46783 -13.29293 -13.15962 -13.07395 -12.95840 -12.87152 -12.71953 -12.37309 -12.28954 -12.22385 -12.10345 -12.01891 -11.92672 -11.83293 -11.72368 -11.31501 -11.13089 -10.94817 -10.69852 -10.59508 -10.35440 -9.91393 -9.54903 -8.92038 -7.92618 -5.18667 0.54086 1.13143 1.47588 1.47837 1.49058 1.58109 2.31193 2.48397 2.58923 3.35699 3.39128 3.54421 3.65857 3.67096 3.81952 3.96009 4.00513 4.05198 4.09745 4.16140 4.22659 4.27276 4.33835 4.40834 4.44970 4.59776 4.62297 4.64529 4.71965 4.73080 4.79253 4.80626 4.84399 4.89747 4.94872 4.97257 5.06577 5.11840 5.13759 5.17705 5.25008 5.31163 5.33736 5.42129 5.54173 5.56496 5.60305 5.67898 5.76614 5.92631 6.30591 6.54970 6.74786 7.38107 7.38389 8.14279 8.39420 9.30539 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015410 B = 0.002449 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.535317 B =11431.660177 C =11758.471546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.036 4.036 3 C -0.130 4.130 4 C 0.127 3.873 5 N -0.319 5.319 6 N -0.358 5.358 7 C 0.086 3.914 8 C 0.119 3.881 9 C -0.319 4.319 10 C 0.593 3.407 11 O -0.581 6.581 12 N -0.698 5.698 13 C 0.154 3.846 14 H 0.105 0.895 15 C -0.169 4.169 16 C 0.174 3.826 17 H 0.073 0.927 18 N -0.715 5.715 19 C -0.239 4.239 20 H 0.072 0.928 21 C -0.071 4.071 22 N -0.965 5.965 23 Si 0.965 3.035 24 H -0.270 1.270 25 H -0.294 1.294 26 H -0.296 1.296 27 C -0.111 4.111 28 C -0.108 4.108 29 C -0.130 4.130 30 C -0.117 4.117 31 H 0.076 0.924 32 H 0.041 0.959 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.123 0.877 40 H 0.096 0.904 41 H 0.222 0.778 42 H 0.407 0.593 43 H 0.070 0.930 44 H 0.053 0.947 45 H 0.379 0.621 46 H 0.250 0.750 47 H 0.108 0.892 48 H 0.053 0.947 49 H 0.054 0.946 50 H 0.082 0.918 51 H 0.058 0.942 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.848 22.372 10.331 25.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.056 4.056 3 C -0.188 4.188 4 C -0.040 4.040 5 N -0.141 5.141 6 N -0.135 5.135 7 C -0.053 4.053 8 C -0.035 4.035 9 C -0.334 4.334 10 C 0.383 3.617 11 O -0.463 6.463 12 N -0.348 5.348 13 C 0.048 3.952 14 H 0.122 0.878 15 C -0.211 4.211 16 C 0.063 3.937 17 H 0.091 0.909 18 N -0.353 5.353 19 C -0.371 4.371 20 H 0.090 0.910 21 C -0.263 4.263 22 N -0.616 5.616 23 Si 0.795 3.205 24 H -0.194 1.194 25 H -0.222 1.222 26 H -0.223 1.223 27 C -0.114 4.114 28 C -0.146 4.146 29 C -0.167 4.167 30 C -0.155 4.155 31 H 0.095 0.905 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.141 0.859 40 H 0.115 0.885 41 H 0.238 0.762 42 H 0.245 0.755 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.214 0.786 46 H 0.059 0.941 47 H 0.126 0.874 48 H 0.072 0.928 49 H 0.072 0.928 50 H 0.100 0.900 51 H 0.077 0.923 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.625 23.362 10.364 26.169 hybrid contribution 0.472 -2.219 -0.372 2.299 sum -5.153 21.143 9.992 23.946 Atomic orbital electron populations 1.21716 0.93161 1.01382 1.02726 1.19965 0.96632 0.96271 0.92764 1.21705 1.00486 0.93938 1.02694 1.22537 0.94259 0.93444 0.93791 1.77078 1.21163 1.15627 1.00208 1.48714 1.36628 1.19695 1.08480 1.22409 1.06088 1.05966 0.70812 1.23602 0.95229 0.94768 0.89875 1.20278 1.15369 1.04495 0.93261 1.17536 0.77134 0.79394 0.87685 1.90662 1.60391 1.68581 1.26619 1.45591 1.51348 1.27907 1.09948 1.21867 0.93531 0.90371 0.89439 0.87756 1.24116 0.99317 0.96583 1.01114 1.21302 0.93077 0.83425 0.95861 0.90852 1.42428 1.84118 1.01483 1.07315 1.19684 1.38776 0.87187 0.91432 0.90997 1.25419 1.03681 1.00007 0.97221 1.69789 1.57497 1.22181 1.12146 0.85190 0.76572 0.80019 0.78704 1.19413 1.22161 1.22320 1.23374 0.93243 0.96159 0.98582 1.22459 0.96133 1.01611 0.94368 1.22636 0.96550 0.99484 0.98042 1.22705 0.94500 0.99527 0.98733 0.90506 0.93965 0.92293 0.88618 0.93574 0.90566 0.92321 0.89027 0.85879 0.88532 0.76200 0.75548 0.91096 0.92846 0.78616 0.94112 0.87416 0.92836 0.92761 0.89968 0.92287 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.18 71.98 0.66 -2.07 16 2 C -0.04 -0.86 3.26 -11.54 -0.04 -0.90 16 3 C -0.13 -2.58 9.17 71.98 0.66 -1.92 16 4 C 0.13 3.19 5.77 43.51 0.25 3.44 16 5 N -0.32 -7.34 12.50 -46.68 -0.58 -7.92 16 6 N -0.36 -5.78 3.98 -367.79 -1.46 -7.25 16 7 C 0.09 0.52 11.44 127.77 1.46 1.99 16 8 C 0.12 1.89 10.99 84.27 0.93 2.82 16 9 C -0.32 -7.66 6.13 -20.15 -0.12 -7.78 16 10 C 0.59 16.75 7.81 86.67 0.68 17.42 16 11 O -0.58 -20.44 14.16 -4.03 -0.06 -20.50 16 12 N -0.70 -17.09 5.24 -444.43 -2.33 -19.42 16 13 C 0.15 4.49 4.12 45.28 0.19 4.68 16 14 H 0.10 3.28 7.46 -2.39 -0.02 3.26 16 15 C -0.17 -5.92 7.69 31.23 0.24 -5.68 16 16 C 0.17 6.69 4.36 45.28 0.20 6.89 16 17 H 0.07 2.90 8.10 -2.39 -0.02 2.88 16 18 N -0.71 -34.34 5.33 -321.56 -1.71 -36.06 16 19 C -0.24 -12.96 9.97 84.03 0.84 -12.13 16 20 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 21 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 22 N -0.97 -57.30 13.06 21.65 0.28 -57.01 16 23 Si 0.97 45.78 29.55 68.60 2.03 47.81 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 27 C -0.11 -3.31 1.06 -52.32 -0.06 -3.36 16 28 C -0.11 -2.91 6.78 30.89 0.21 -2.70 16 29 C -0.13 -3.64 8.08 31.23 0.25 -3.38 16 30 C -0.12 -3.14 7.84 30.89 0.24 -2.89 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.10 2.75 5.60 -2.39 -0.01 2.73 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 40 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.22 1.52 7.46 -2.91 -0.02 1.50 16 42 H 0.41 7.67 5.96 -92.71 -0.55 7.12 16 43 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 44 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.38 19.16 5.92 -92.71 -0.55 18.61 16 46 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 47 H 0.11 2.06 7.03 -2.39 -0.02 2.05 16 48 H 0.05 1.75 6.42 -2.39 -0.02 1.74 16 49 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 51 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 52 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 Total: -1.00 -73.63 416.52 3.05 -70.59 By element: Atomic # 1 Polarization: 39.03 SS G_CDS: -0.17 Total: 38.86 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: 7.05 Total: -9.10 kcal Atomic # 7 Polarization: -121.86 SS G_CDS: -5.81 Total: -127.66 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.06 Total: -20.50 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -73.63 3.05 -70.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078810195.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.585 kcal (2) G-P(sol) polarization free energy of solvation -73.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds