Wall clock time and date at job start Wed Apr 1 2020 05:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34263 * 125.75026 * 2 1 4 4 C 1.38045 * 107.41488 * 179.73439 * 3 2 1 5 5 C 1.47429 * 126.41139 * 180.26130 * 4 3 2 6 6 O 1.21604 * 119.99724 * 185.39408 * 5 4 3 7 7 N 1.34778 * 120.00171 * 5.39135 * 5 4 3 8 8 C 1.47281 * 136.54536 * 0.02562 * 7 5 4 9 9 C 1.54075 * 87.61068 * 151.35683 * 8 7 5 10 10 H 1.09001 * 115.04181 * 142.49704 * 9 8 7 11 11 C 1.53058 * 111.39685 * 273.97221 * 9 8 7 12 12 C 1.53144 * 109.21598 * 142.39461 * 11 9 8 13 13 N 1.46533 * 108.25376 * 301.58846 * 12 11 9 14 14 C 1.36933 * 119.74271 * 236.43999 * 13 12 11 15 15 H 1.08005 * 119.99260 * 25.77637 * 14 13 12 16 16 C 1.38805 * 120.00487 * 205.77021 * 14 13 12 17 17 N 1.31623 * 119.99905 * 14.46523 * 16 14 13 18 18 Si 1.86797 * 120.00294 * 194.46490 * 16 14 13 19 19 H 1.48499 * 109.47203 * 84.99678 * 18 16 14 20 20 H 1.48507 * 109.47299 * 204.99982 * 18 16 14 21 21 H 1.48501 * 109.47040 * 324.99451 * 18 16 14 22 22 C 1.45699 * 120.52012 * 56.42338 * 13 12 11 23 23 C 1.46462 * 136.54118 * 179.62191 * 7 5 4 24 24 H 1.09006 * 111.44274 * 96.38974 * 23 7 5 25 25 C 1.41281 * 107.17283 * 0.26390 * 4 3 2 26 26 C 1.50704 * 125.99153 * 179.97438 * 25 4 3 27 27 C 1.52996 * 109.47023 * 56.42977 * 26 25 4 28 28 C 1.52996 * 109.47418 * 176.43012 * 26 25 4 29 29 C 1.52998 * 109.46924 * 296.43029 * 26 25 4 30 30 N 1.30454 * 108.02406 * 0.02562 * 25 4 3 31 31 H 1.09000 * 109.46676 * 90.00325 * 1 2 3 32 32 H 1.09004 * 109.47116 * 209.99485 * 1 2 3 33 33 H 1.08998 * 109.47768 * 330.00577 * 1 2 3 34 34 H 1.07997 * 126.29261 * 359.97438 * 3 2 1 35 35 H 1.09006 * 113.52744 * 266.04356 * 8 7 5 36 36 H 1.09003 * 113.53008 * 36.66682 * 8 7 5 37 37 H 1.09000 * 109.51559 * 262.32053 * 11 9 8 38 38 H 1.08999 * 109.51011 * 22.46941 * 11 9 8 39 39 H 1.09000 * 109.70616 * 61.28172 * 12 11 9 40 40 H 1.09004 * 109.70736 * 181.89865 * 12 11 9 41 41 H 0.97001 * 120.00076 * 179.97438 * 17 16 14 42 42 H 1.09001 * 108.79002 * 80.89549 * 22 13 12 43 43 H 1.08997 * 108.78981 * 199.22315 * 22 13 12 44 44 H 1.09001 * 109.47564 * 68.57350 * 27 26 25 45 45 H 1.08997 * 109.47523 * 188.57753 * 27 26 25 46 46 H 1.09004 * 109.46949 * 308.57542 * 27 26 25 47 47 H 1.09000 * 109.47114 * 59.99576 * 28 26 25 48 48 H 1.08992 * 109.47367 * 179.97438 * 28 26 25 49 49 H 1.09001 * 109.47280 * 300.00195 * 28 26 25 50 50 H 1.09005 * 109.47345 * 66.31121 * 29 26 25 51 51 H 1.09001 * 109.46982 * 186.30833 * 29 26 25 52 52 H 1.08995 * 109.47431 * 306.30934 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2494 1.0896 0.0000 4 6 3.5598 0.6554 0.0061 5 6 4.7637 1.5063 0.0137 6 8 5.8658 1.0012 -0.0804 7 7 4.6427 2.8441 0.1249 8 6 3.5391 3.8106 0.2558 9 6 4.5159 4.7246 1.0202 10 1 4.4058 5.7898 0.8172 11 6 4.5531 4.3794 2.5109 12 6 5.9882 4.5231 3.0259 13 7 6.8475 3.6286 2.2458 14 6 7.6053 2.6850 2.8864 15 1 7.2958 2.3069 3.8495 16 6 8.7710 2.2143 2.2979 17 7 9.3019 2.8598 1.2810 18 14 9.5864 0.6650 2.9491 19 1 8.9582 -0.5258 2.3225 20 1 11.0343 0.6918 2.6198 21 1 9.4152 0.5974 4.4226 22 6 6.9018 3.7352 0.7937 23 6 5.5497 3.9928 0.1773 24 1 5.6651 4.4545 -0.8034 25 6 3.5311 -0.7571 0.0036 26 6 4.7323 -1.6673 0.0078 27 6 5.6147 -1.3416 1.2145 28 6 4.2689 -3.1229 0.0930 29 6 5.5326 -1.4614 -1.2798 30 7 2.2827 -1.1355 -0.0041 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3634 0.8900 0.5137 34 1 1.9165 2.1170 -0.0004 35 1 3.2092 4.2259 -0.6965 36 1 2.7132 3.4478 0.8677 37 1 3.9000 5.0589 3.0584 38 1 4.2154 3.3532 2.6555 39 1 6.3216 5.5535 2.9023 40 1 6.0300 4.2465 4.0795 41 1 10.1167 2.5311 0.8700 42 1 7.5729 4.5515 0.5264 43 1 7.3015 2.8058 0.3882 44 1 5.0996 -1.6317 2.1302 45 1 6.5536 -1.8897 1.1365 46 1 5.8196 -0.2712 1.2363 47 1 3.6402 -3.3550 -0.7666 48 1 5.1376 -3.7812 0.0956 49 1 3.6987 -3.2697 1.0103 50 1 5.9570 -0.4574 -1.2872 51 1 6.3364 -2.1959 -1.3293 52 1 4.8748 -1.5841 -2.1401 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084725176.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:21 Heat of formation + Delta-G solvation = 119.555137 kcal Electronic energy + Delta-G solvation = -33566.269971 eV Core-core repulsion = 29570.326153 eV Total energy + Delta-G solvation = -3995.943818 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.46589 -40.28933 -37.65341 -36.26515 -35.12958 -32.71294 -32.08533 -30.69937 -30.07761 -28.57770 -27.07451 -26.95956 -26.67729 -26.41369 -23.86664 -23.23177 -22.16644 -21.58623 -20.78668 -19.88385 -18.20159 -17.75028 -17.21861 -16.33324 -15.82019 -15.60819 -15.49714 -15.07440 -14.68862 -14.18946 -13.99066 -13.91339 -13.72812 -13.55940 -13.44164 -13.13698 -12.94495 -12.81818 -12.56788 -12.40333 -12.21388 -11.88770 -11.79440 -11.61376 -11.44421 -11.16018 -10.95399 -10.83044 -10.76003 -10.57091 -10.56766 -10.55481 -10.42505 -10.14182 -10.04483 -9.78573 -9.70150 -9.46993 -9.24386 -8.74879 -8.47194 -8.21963 -7.94875 -6.51766 -5.58695 -3.00783 1.64700 2.36196 2.43467 3.39976 3.54105 3.59260 3.63075 3.95737 4.30781 4.57105 4.66526 4.71639 4.79694 4.88517 5.03718 5.12331 5.16783 5.24424 5.40544 5.43170 5.49925 5.52145 5.57688 5.65900 5.69920 5.74753 5.77931 5.92331 5.98314 6.09219 6.17870 6.22494 6.25580 6.29250 6.36251 6.41964 6.43335 6.48936 6.52985 6.57797 6.64257 6.78460 6.83078 6.86324 6.98614 7.04466 7.23872 7.56525 7.72417 7.84741 8.01400 8.46181 8.64824 8.98834 9.43015 10.06979 10.54716 11.49463 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009988 B = 0.005504 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.598555 B = 5085.910975 C = 7015.146878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.371 5.371 3 C 0.085 3.915 4 C -0.265 4.265 5 C 0.614 3.386 6 O -0.500 6.500 7 N -0.628 5.628 8 C 0.089 3.911 9 C -0.112 4.112 10 H 0.091 0.909 11 C -0.116 4.116 12 C 0.149 3.851 13 N -0.583 5.583 14 C -0.251 4.251 15 H 0.060 0.940 16 C 0.015 3.985 17 N -0.903 5.903 18 Si 0.895 3.105 19 H -0.282 1.282 20 H -0.294 1.294 21 H -0.284 1.284 22 C 0.167 3.833 23 C 0.123 3.877 24 H 0.070 0.930 25 C 0.148 3.852 26 C 0.021 3.979 27 C -0.154 4.154 28 C -0.134 4.134 29 C -0.149 4.149 30 N -0.303 5.303 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.180 0.820 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.018 0.982 40 H 0.054 0.946 41 H 0.251 0.749 42 H 0.029 0.971 43 H 0.105 0.895 44 H 0.039 0.961 45 H 0.056 0.944 46 H 0.106 0.894 47 H 0.053 0.947 48 H 0.056 0.944 49 H 0.053 0.947 50 H 0.099 0.901 51 H 0.055 0.945 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.942 -0.517 -4.533 19.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.150 5.150 3 C -0.065 4.065 4 C -0.280 4.280 5 C 0.405 3.595 6 O -0.376 6.376 7 N -0.364 5.364 8 C -0.035 4.035 9 C -0.131 4.131 10 H 0.109 0.891 11 C -0.155 4.155 12 C 0.022 3.978 13 N -0.306 5.306 14 C -0.380 4.380 15 H 0.078 0.922 16 C -0.183 4.183 17 N -0.548 5.548 18 Si 0.725 3.275 19 H -0.208 1.208 20 H -0.220 1.220 21 H -0.209 1.209 22 C 0.041 3.959 23 C 0.019 3.981 24 H 0.087 0.913 25 C -0.020 4.020 26 C 0.018 3.982 27 C -0.212 4.212 28 C -0.192 4.192 29 C -0.206 4.206 30 N -0.123 5.123 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.197 0.803 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.036 0.964 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.046 0.954 43 H 0.123 0.877 44 H 0.058 0.942 45 H 0.075 0.925 46 H 0.124 0.876 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.072 0.928 50 H 0.117 0.883 51 H 0.074 0.926 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -19.148 -2.092 -4.711 19.830 hybrid contribution 0.477 -0.052 0.165 0.507 sum -18.671 -2.144 -4.546 19.336 Atomic orbital electron populations 1.21881 0.74149 1.04605 1.03399 1.48265 1.06731 1.04025 1.55957 1.23286 0.90745 0.93485 0.99001 1.20371 0.92691 0.93820 1.21118 1.16537 0.87533 0.78961 0.76450 1.90667 1.26901 1.70996 1.49061 1.49241 1.10588 1.03351 1.73261 1.23409 0.92212 0.88818 0.99073 1.22686 0.96104 0.97963 0.96338 0.89121 1.21845 1.00121 1.00717 0.92819 1.20705 0.88658 0.93345 0.95092 1.43436 1.49090 1.37300 1.00737 1.19042 1.00959 1.14502 1.03530 0.92216 1.24865 0.96010 0.98872 0.98569 1.70002 1.20677 1.38433 1.25682 0.86425 0.78233 0.84631 0.78163 1.20818 1.22019 1.20936 1.20167 0.88589 1.03393 0.83754 1.22457 0.95370 0.82512 0.97749 0.91250 1.22445 0.92749 0.92320 0.94470 1.18984 0.89279 0.91645 0.98260 1.22206 0.97793 1.06942 0.94221 1.21816 1.00670 0.94945 1.01734 1.22098 0.98877 1.05592 0.94072 1.77145 1.01338 1.06895 1.26922 0.90676 0.89143 0.89418 0.80345 0.90569 0.91456 0.92890 0.92090 0.96391 0.92728 0.93871 0.95365 0.87696 0.94187 0.92493 0.87609 0.92819 0.92480 0.92798 0.88310 0.92598 0.94159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.71 11.44 59.85 0.68 1.39 16 2 N -0.37 -4.66 3.98 -67.60 -0.27 -4.92 16 3 C 0.08 1.11 10.61 -16.56 -0.18 0.93 16 4 C -0.27 -4.53 5.94 -105.07 -0.62 -5.16 16 5 C 0.61 12.12 7.54 -12.52 -0.09 12.03 16 6 O -0.50 -11.66 9.46 5.27 0.05 -11.61 16 7 N -0.63 -11.03 3.34 -189.39 -0.63 -11.66 16 8 C 0.09 1.10 6.35 -11.56 -0.07 1.03 16 9 C -0.11 -1.62 4.57 -90.47 -0.41 -2.03 16 10 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 11 C -0.12 -1.87 5.69 -26.63 -0.15 -2.02 16 12 C 0.15 3.03 6.46 -3.95 -0.03 3.01 16 13 N -0.58 -14.61 3.02 -175.07 -0.53 -15.14 16 14 C -0.25 -7.08 9.52 -15.06 -0.14 -7.23 16 15 H 0.06 1.69 7.84 -52.48 -0.41 1.28 16 16 C 0.02 0.45 4.94 -17.43 -0.09 0.36 16 17 N -0.90 -27.04 10.98 55.49 0.61 -26.43 16 18 Si 0.90 23.16 29.58 -169.99 -5.03 18.13 16 19 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 20 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 21 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 22 C 0.17 4.04 4.59 -5.57 -0.03 4.02 16 23 C 0.12 2.27 3.98 -78.00 -0.31 1.96 16 24 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 25 C 0.15 2.56 5.64 -82.02 -0.46 2.10 16 26 C 0.02 0.35 0.75 -155.66 -0.12 0.24 16 27 C -0.15 -3.02 8.18 37.16 0.30 -2.71 16 28 C -0.13 -1.97 7.95 37.16 0.30 -1.68 16 29 C -0.15 -2.56 8.28 37.16 0.31 -2.25 16 30 N -0.30 -4.79 11.80 33.90 0.40 -4.39 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.18 1.71 5.40 -52.49 -0.28 1.43 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.72 6.32 -51.93 -0.33 0.39 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 1.10 7.68 -51.93 -0.40 0.71 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.05 1.11 7.87 -51.93 -0.41 0.71 16 41 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.03 0.74 7.99 -51.93 -0.41 0.33 16 43 H 0.11 2.98 4.99 -51.93 -0.26 2.72 16 44 H 0.04 0.73 8.13 -51.93 -0.42 0.31 16 45 H 0.06 1.10 8.13 -51.93 -0.42 0.68 16 46 H 0.11 2.46 4.37 -51.93 -0.23 2.23 16 47 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 50 H 0.10 1.98 4.90 -51.93 -0.25 1.73 16 51 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 52 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 393.68 15.07 5.93 5.93 Total: -1.00 -34.67 393.68 -9.04 -43.71 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -8.46 Total: 2.41 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -1.11 Total: 3.98 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: -0.42 Total: -62.55 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.05 Total: -11.61 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.03 Total: 18.13 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.67 -9.04 -43.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084725176.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.262 kcal (2) G-P(sol) polarization free energy of solvation -34.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds