Wall clock time and date at job start Wed Apr 1 2020 05:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34263 * 125.75026 * 2 1 4 4 C 1.38045 * 107.41488 * 179.73439 * 3 2 1 5 5 C 1.47429 * 126.41139 * 180.26130 * 4 3 2 6 6 O 1.21604 * 119.99724 * 185.39408 * 5 4 3 7 7 N 1.34778 * 120.00171 * 5.39135 * 5 4 3 8 8 C 1.47281 * 136.54536 * 0.02562 * 7 5 4 9 9 C 1.54075 * 87.61068 * 151.35683 * 8 7 5 10 10 H 1.09001 * 115.04181 * 142.49704 * 9 8 7 11 11 C 1.53058 * 111.39685 * 273.97221 * 9 8 7 12 12 C 1.53144 * 109.21598 * 142.39461 * 11 9 8 13 13 N 1.46533 * 108.25376 * 301.58846 * 12 11 9 14 14 C 1.36933 * 119.74271 * 236.43999 * 13 12 11 15 15 H 1.08005 * 119.99260 * 25.77637 * 14 13 12 16 16 C 1.38805 * 120.00487 * 205.77021 * 14 13 12 17 17 N 1.31623 * 119.99905 * 14.46523 * 16 14 13 18 18 Si 1.86797 * 120.00294 * 194.46490 * 16 14 13 19 19 H 1.48499 * 109.47203 * 84.99678 * 18 16 14 20 20 H 1.48507 * 109.47299 * 204.99982 * 18 16 14 21 21 H 1.48501 * 109.47040 * 324.99451 * 18 16 14 22 22 C 1.45699 * 120.52012 * 56.42338 * 13 12 11 23 23 C 1.46462 * 136.54118 * 179.62191 * 7 5 4 24 24 H 1.09006 * 111.44274 * 96.38974 * 23 7 5 25 25 C 1.41281 * 107.17283 * 0.26390 * 4 3 2 26 26 C 1.50704 * 125.99153 * 179.97438 * 25 4 3 27 27 C 1.52996 * 109.47023 * 56.42977 * 26 25 4 28 28 C 1.52996 * 109.47418 * 176.43012 * 26 25 4 29 29 C 1.52998 * 109.46924 * 296.43029 * 26 25 4 30 30 N 1.30454 * 108.02406 * 0.02562 * 25 4 3 31 31 H 1.09000 * 109.46676 * 90.00325 * 1 2 3 32 32 H 1.09004 * 109.47116 * 209.99485 * 1 2 3 33 33 H 1.08998 * 109.47768 * 330.00577 * 1 2 3 34 34 H 1.07997 * 126.29261 * 359.97438 * 3 2 1 35 35 H 1.09006 * 113.52744 * 266.04356 * 8 7 5 36 36 H 1.09003 * 113.53008 * 36.66682 * 8 7 5 37 37 H 1.09000 * 109.51559 * 262.32053 * 11 9 8 38 38 H 1.08999 * 109.51011 * 22.46941 * 11 9 8 39 39 H 1.09000 * 109.70616 * 61.28172 * 12 11 9 40 40 H 1.09004 * 109.70736 * 181.89865 * 12 11 9 41 41 H 0.97001 * 120.00076 * 179.97438 * 17 16 14 42 42 H 1.09001 * 108.79002 * 80.89549 * 22 13 12 43 43 H 1.08997 * 108.78981 * 199.22315 * 22 13 12 44 44 H 1.09001 * 109.47564 * 68.57350 * 27 26 25 45 45 H 1.08997 * 109.47523 * 188.57753 * 27 26 25 46 46 H 1.09004 * 109.46949 * 308.57542 * 27 26 25 47 47 H 1.09000 * 109.47114 * 59.99576 * 28 26 25 48 48 H 1.08992 * 109.47367 * 179.97438 * 28 26 25 49 49 H 1.09001 * 109.47280 * 300.00195 * 28 26 25 50 50 H 1.09005 * 109.47345 * 66.31121 * 29 26 25 51 51 H 1.09001 * 109.46982 * 186.30833 * 29 26 25 52 52 H 1.08995 * 109.47431 * 306.30934 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2494 1.0896 0.0000 4 6 3.5598 0.6554 0.0061 5 6 4.7637 1.5063 0.0137 6 8 5.8658 1.0012 -0.0804 7 7 4.6427 2.8441 0.1249 8 6 3.5391 3.8106 0.2558 9 6 4.5159 4.7246 1.0202 10 1 4.4058 5.7898 0.8172 11 6 4.5531 4.3794 2.5109 12 6 5.9882 4.5231 3.0259 13 7 6.8475 3.6286 2.2458 14 6 7.6053 2.6850 2.8864 15 1 7.2958 2.3069 3.8495 16 6 8.7710 2.2143 2.2979 17 7 9.3019 2.8598 1.2810 18 14 9.5864 0.6650 2.9491 19 1 8.9582 -0.5258 2.3225 20 1 11.0343 0.6918 2.6198 21 1 9.4152 0.5974 4.4226 22 6 6.9018 3.7352 0.7937 23 6 5.5497 3.9928 0.1773 24 1 5.6651 4.4545 -0.8034 25 6 3.5311 -0.7571 0.0036 26 6 4.7323 -1.6673 0.0078 27 6 5.6147 -1.3416 1.2145 28 6 4.2689 -3.1229 0.0930 29 6 5.5326 -1.4614 -1.2798 30 7 2.2827 -1.1355 -0.0041 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3634 0.8900 0.5137 34 1 1.9165 2.1170 -0.0004 35 1 3.2092 4.2259 -0.6965 36 1 2.7132 3.4478 0.8677 37 1 3.9000 5.0589 3.0584 38 1 4.2154 3.3532 2.6555 39 1 6.3216 5.5535 2.9023 40 1 6.0300 4.2465 4.0795 41 1 10.1167 2.5311 0.8700 42 1 7.5729 4.5515 0.5264 43 1 7.3015 2.8058 0.3882 44 1 5.0996 -1.6317 2.1302 45 1 6.5536 -1.8897 1.1365 46 1 5.8196 -0.2712 1.2363 47 1 3.6402 -3.3550 -0.7666 48 1 5.1376 -3.7812 0.0956 49 1 3.6987 -3.2697 1.0103 50 1 5.9570 -0.4574 -1.2872 51 1 6.3364 -2.1959 -1.3293 52 1 4.8748 -1.5841 -2.1401 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084725176.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:20 Heat of formation + Delta-G solvation = 96.448947 kcal Electronic energy + Delta-G solvation = -33567.271930 eV Core-core repulsion = 29570.326153 eV Total energy + Delta-G solvation = -3996.945778 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.59933 -41.58013 -39.03461 -37.62865 -36.90808 -33.94950 -33.62084 -32.00271 -31.79585 -29.97012 -28.59397 -28.15264 -28.12873 -27.50026 -25.65149 -24.68286 -23.46612 -22.82662 -22.16539 -21.16222 -19.61920 -19.21408 -18.60951 -17.77104 -17.25601 -17.03526 -16.60021 -16.40694 -16.00656 -15.87634 -15.60518 -15.28182 -15.18714 -14.95425 -14.78852 -14.44787 -14.39022 -14.07532 -13.75870 -13.58201 -13.36628 -13.30757 -13.09797 -13.02880 -13.00520 -12.71843 -12.63823 -12.42001 -12.32329 -12.15199 -12.10752 -11.99416 -11.91812 -11.89520 -11.62566 -11.39398 -11.33632 -11.00084 -10.55063 -10.32798 -10.12049 -9.63862 -9.24454 -8.59071 -7.79031 -5.21929 0.61294 1.16848 1.37280 1.46862 1.47053 1.49304 2.15024 2.52980 2.64270 3.29772 3.36732 3.50935 3.63774 3.80065 3.83809 3.92664 4.05273 4.07440 4.14456 4.30588 4.36001 4.45756 4.48284 4.55157 4.57543 4.61705 4.70918 4.72137 4.74037 4.76260 4.80985 4.84431 4.86097 4.94047 4.94928 5.02033 5.06311 5.09973 5.12600 5.17174 5.19774 5.38755 5.49037 5.51468 5.54670 5.62455 5.67558 5.79958 5.92820 5.97847 6.46769 6.59513 7.15781 7.26942 7.62682 8.04107 8.41862 9.24850 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009988 B = 0.005504 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.598555 B = 5085.910975 C = 7015.146878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.360 5.360 3 C 0.114 3.886 4 C -0.303 4.303 5 C 0.602 3.398 6 O -0.554 6.554 7 N -0.638 5.638 8 C 0.102 3.898 9 C -0.100 4.100 10 H 0.131 0.869 11 C -0.103 4.103 12 C 0.139 3.861 13 N -0.599 5.599 14 C -0.250 4.250 15 H 0.053 0.947 16 C -0.035 4.035 17 N -0.929 5.929 18 Si 0.942 3.058 19 H -0.293 1.293 20 H -0.293 1.293 21 H -0.269 1.269 22 C 0.181 3.819 23 C 0.111 3.889 24 H 0.086 0.914 25 C 0.127 3.873 26 C 0.020 3.980 27 C -0.146 4.146 28 C -0.124 4.124 29 C -0.141 4.141 30 N -0.317 5.317 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.125 0.875 34 H 0.222 0.778 35 H 0.118 0.882 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.040 0.960 39 H 0.026 0.974 40 H 0.046 0.954 41 H 0.243 0.757 42 H -0.009 1.009 43 H 0.054 0.946 44 H 0.042 0.958 45 H 0.045 0.955 46 H 0.070 0.930 47 H 0.062 0.938 48 H 0.065 0.935 49 H 0.053 0.947 50 H 0.067 0.933 51 H 0.059 0.941 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.153 0.828 -4.569 24.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.137 5.137 3 C -0.039 4.039 4 C -0.318 4.318 5 C 0.395 3.605 6 O -0.435 6.435 7 N -0.373 5.373 8 C -0.019 4.019 9 C -0.119 4.119 10 H 0.149 0.851 11 C -0.142 4.142 12 C 0.014 3.986 13 N -0.323 5.323 14 C -0.381 4.381 15 H 0.071 0.929 16 C -0.230 4.230 17 N -0.576 5.576 18 Si 0.772 3.228 19 H -0.221 1.221 20 H -0.219 1.219 21 H -0.194 1.194 22 C 0.055 3.945 23 C 0.006 3.994 24 H 0.103 0.897 25 C -0.040 4.040 26 C 0.018 3.982 27 C -0.204 4.204 28 C -0.181 4.181 29 C -0.199 4.199 30 N -0.139 5.139 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.143 0.857 34 H 0.239 0.761 35 H 0.136 0.864 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.059 0.941 39 H 0.044 0.956 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.009 0.991 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.089 0.911 47 H 0.081 0.919 48 H 0.084 0.916 49 H 0.072 0.928 50 H 0.086 0.914 51 H 0.078 0.922 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -24.445 -0.719 -4.719 24.907 hybrid contribution 2.008 -0.392 0.223 2.058 sum -22.437 -1.111 -4.495 22.910 Atomic orbital electron populations 1.22420 0.70595 1.06702 1.05411 1.48730 1.08506 1.02990 1.53523 1.23709 0.89046 0.95113 0.95995 1.20277 0.93455 0.93542 1.24526 1.17054 0.87798 0.79846 0.75824 1.90657 1.29125 1.72256 1.51418 1.49360 1.12379 1.02987 1.72565 1.23647 0.91112 0.86024 1.01127 1.22707 0.94429 1.00288 0.94510 0.85103 1.21699 0.97108 1.00769 0.94615 1.20951 0.90755 0.92517 0.94391 1.43661 1.49417 1.37710 1.01481 1.19261 1.00841 1.14817 1.03178 0.92907 1.25439 0.97078 1.01192 0.99316 1.70158 1.20837 1.39619 1.27012 0.85653 0.77230 0.81603 0.78288 1.22102 1.21943 1.19420 1.19764 0.91771 0.99436 0.83533 1.22446 0.93356 0.84527 0.99077 0.89663 1.22350 0.93116 0.92681 0.95813 1.18880 0.89384 0.93437 0.96474 1.22057 0.98062 1.04336 0.95948 1.21718 1.01072 0.93281 1.02056 1.21973 0.99192 1.03796 0.94951 1.77061 1.00952 1.08645 1.27226 0.88645 0.88792 0.85698 0.76149 0.86408 0.88565 0.88322 0.94145 0.95640 0.93555 0.94816 0.99103 0.92760 0.93918 0.93597 0.91149 0.91928 0.91629 0.92794 0.91411 0.92217 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 11.44 127.77 1.46 2.22 16 2 N -0.36 -7.58 3.98 -367.78 -1.46 -9.05 16 3 C 0.11 2.50 10.61 84.28 0.89 3.39 16 4 C -0.30 -10.06 5.94 -20.15 -0.12 -10.18 16 5 C 0.60 24.26 7.54 86.66 0.65 24.91 16 6 O -0.55 -27.92 9.46 -4.04 -0.04 -27.96 16 7 N -0.64 -21.51 3.34 -871.37 -2.91 -24.42 16 8 C 0.10 1.97 6.35 81.08 0.52 2.49 16 9 C -0.10 -2.48 4.57 -10.69 -0.05 -2.53 16 10 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 11 C -0.10 -2.97 5.69 30.66 0.17 -2.80 16 12 C 0.14 5.58 6.46 86.42 0.56 6.14 16 13 N -0.60 -31.12 3.02 -707.81 -2.14 -33.26 16 14 C -0.25 -14.85 9.52 84.03 0.80 -14.05 16 15 H 0.05 3.13 7.84 -2.91 -0.02 3.11 16 16 C -0.03 -2.12 4.94 84.86 0.42 -1.70 16 17 N -0.93 -59.51 10.98 21.65 0.24 -59.27 16 18 Si 0.94 50.37 29.58 68.60 2.03 52.40 16 19 H -0.29 -16.10 7.11 99.48 0.71 -15.39 16 20 H -0.29 -15.47 7.11 99.48 0.71 -14.76 16 21 H -0.27 -13.58 7.11 99.48 0.71 -12.87 16 22 C 0.18 9.23 4.59 85.82 0.39 9.62 16 23 C 0.11 3.99 3.98 38.49 0.15 4.14 16 24 H 0.09 2.77 8.14 -2.38 -0.02 2.76 16 25 C 0.13 4.37 5.64 43.51 0.25 4.61 16 26 C 0.02 0.72 0.75 -52.93 -0.04 0.69 16 27 C -0.15 -6.12 8.18 71.98 0.59 -5.54 16 28 C -0.12 -3.62 7.95 71.98 0.57 -3.05 16 29 C -0.14 -5.14 8.28 71.98 0.60 -4.55 16 30 N -0.32 -9.43 11.80 -46.68 -0.55 -9.98 16 31 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.22 2.71 5.40 -2.91 -0.02 2.70 16 35 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.10 1.35 6.32 -2.39 -0.02 1.34 16 37 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.04 1.35 7.68 -2.39 -0.02 1.33 16 39 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.05 1.89 7.87 -2.38 -0.02 1.87 16 41 H 0.24 15.32 8.31 -92.71 -0.77 14.55 16 42 H -0.01 -0.49 7.99 -2.39 -0.02 -0.51 16 43 H 0.05 3.33 4.99 -2.39 -0.01 3.31 16 44 H 0.04 1.66 8.13 -2.39 -0.02 1.64 16 45 H 0.04 1.92 8.13 -2.39 -0.02 1.90 16 46 H 0.07 3.55 4.37 -2.38 -0.01 3.54 16 47 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 49 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.07 2.96 4.90 -2.38 -0.01 2.95 16 51 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 52 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -87.35 393.68 3.89 -83.45 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.91 Total: 14.28 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 7.82 Total: 13.82 kcal Atomic # 7 Polarization: -129.16 SS G_CDS: -6.83 Total: -135.99 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.04 Total: -27.96 kcal Atomic # 14 Polarization: 50.37 SS G_CDS: 2.03 Total: 52.40 kcal Total: -87.35 3.89 -83.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084725176.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.902 kcal (2) G-P(sol) polarization free energy of solvation -87.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds