Wall clock time and date at job start Wed Apr 1 2020 06:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47140 * 2 1 4 4 C 1.52995 * 109.47333 * 240.00034 * 2 1 3 5 5 C 1.50703 * 109.47167 * 119.99421 * 2 1 3 6 6 N 1.31873 * 118.94631 * 60.00742 * 5 2 1 7 7 C 1.32151 * 120.96130 * 180.02562 * 6 5 2 8 8 C 1.39945 * 118.92909 * 359.97438 * 7 6 5 9 9 C 1.47829 * 120.94278 * 180.02562 * 8 7 6 10 10 O 1.21553 * 119.99917 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00159 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99828 * 180.27793 * 11 9 8 13 13 H 1.09004 * 109.47372 * 34.71852 * 12 11 9 14 14 C 1.52997 * 109.47036 * 274.72131 * 12 11 9 15 15 C 1.53003 * 109.47241 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47087 * 59.99958 * 15 14 12 17 17 C 1.52997 * 109.47114 * 300.00120 * 16 15 14 18 18 C 1.52999 * 109.46963 * 154.72290 * 12 11 9 19 19 H 1.08995 * 109.47266 * 59.99845 * 18 12 11 20 20 N 1.46503 * 109.47247 * 299.99162 * 18 12 11 21 21 C 1.36937 * 120.00056 * 154.99604 * 20 18 12 22 22 H 1.08005 * 119.99967 * 0.02562 * 21 20 18 23 23 C 1.38806 * 120.00094 * 180.02562 * 21 20 18 24 24 N 1.31618 * 120.00321 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99974 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.47089 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47344 * 120.00318 * 25 23 21 28 28 H 1.48506 * 109.46807 * 240.00352 * 25 23 21 29 29 C 1.39953 * 118.11807 * 0.27864 * 8 7 6 30 30 N 1.31869 * 118.95637 * 240.02417 * 5 2 1 31 31 H 1.09000 * 109.47289 * 300.00202 * 1 2 3 32 32 H 1.08998 * 109.46994 * 60.00193 * 1 2 3 33 33 H 1.09005 * 109.47142 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47584 * 179.97438 * 3 2 1 35 35 H 1.09007 * 109.46763 * 300.00355 * 3 2 1 36 36 H 1.09000 * 109.47195 * 59.99740 * 3 2 1 37 37 H 1.09005 * 109.47090 * 299.99579 * 4 2 1 38 38 H 1.08998 * 109.47266 * 59.99939 * 4 2 1 39 39 H 1.09000 * 109.47570 * 180.02562 * 4 2 1 40 40 H 1.07999 * 120.53451 * 180.02562 * 7 6 5 41 41 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 42 42 H 1.09009 * 109.47238 * 300.00198 * 14 12 11 43 43 H 1.08997 * 109.47293 * 60.00168 * 14 12 11 44 44 H 1.09000 * 109.47191 * 180.02562 * 15 14 12 45 45 H 1.08995 * 109.46928 * 299.99922 * 15 14 12 46 46 H 1.08995 * 109.47266 * 60.00171 * 16 15 14 47 47 H 1.09003 * 109.47147 * 180.02562 * 16 15 14 48 48 H 1.08997 * 109.47293 * 180.02562 * 17 16 15 49 49 H 1.09004 * 109.46812 * 300.00187 * 17 16 15 50 50 H 0.96998 * 119.99938 * 335.01407 * 20 18 12 51 51 H 0.96999 * 120.00722 * 179.97438 * 24 23 21 52 52 H 1.07995 * 120.53723 * 179.70435 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2306 6 7 1.7012 -1.9729 1.4186 7 6 2.1191 -2.6339 2.4839 8 6 2.9247 -1.9728 3.4179 9 6 3.4175 -2.6695 4.6250 10 8 3.1243 -3.8334 4.8171 11 7 4.1918 -2.0143 5.5124 12 6 4.6851 -2.7067 6.7055 13 1 4.8892 -3.7494 6.4622 14 6 3.6274 -2.6381 7.8088 15 6 4.1428 -3.3606 9.0551 16 6 5.4290 -2.6881 9.5392 17 6 6.4867 -2.7566 8.4359 18 6 5.9715 -2.0346 7.1898 19 1 5.7673 -0.9920 7.4331 20 7 6.9844 -2.1004 6.1334 21 6 7.9926 -1.1747 6.0929 22 1 8.0414 -0.3963 6.8401 23 6 8.9520 -1.2367 5.0917 24 7 8.8924 -2.1849 4.1809 25 14 10.3278 0.0257 5.0370 26 1 10.1700 0.9791 6.1647 27 1 11.6377 -0.6643 5.1512 28 1 10.2690 0.7665 3.7513 29 6 3.2462 -0.6316 3.1796 30 7 2.7887 -0.0495 2.0851 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.6767 -1.7489 -1.2492 38 1 1.6767 -0.2074 -2.1392 39 1 3.1300 -0.7216 -1.2490 40 1 1.8441 -3.6679 2.6308 41 1 4.4260 -1.0856 5.3589 42 1 3.4232 -1.5953 8.0522 43 1 2.7109 -3.1168 7.4639 44 1 3.3890 -3.3122 9.8410 45 1 4.3472 -4.4033 8.8121 46 1 5.2245 -1.6454 9.7822 47 1 5.7964 -3.2031 10.4268 48 1 7.4032 -2.2779 8.7808 49 1 6.6911 -3.7994 8.1929 50 1 6.9407 -2.7995 5.4624 51 1 9.5626 -2.2280 3.4810 52 1 3.8612 -0.0825 3.8771 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085440777.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:43 Heat of formation + Delta-G solvation = -2.480055 kcal Electronic energy + Delta-G solvation = -31085.281351 eV Core-core repulsion = 27084.045690 eV Total energy + Delta-G solvation = -4001.235661 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 26.12 seconds Orbital eigenvalues (eV) -41.43366 -39.69838 -37.92616 -36.75633 -34.29625 -34.06444 -33.60827 -31.74534 -31.18664 -29.26516 -27.75711 -27.49929 -27.46793 -25.26143 -24.39306 -23.77027 -22.37117 -21.14722 -20.71048 -19.97399 -19.65226 -17.90207 -17.70718 -17.03331 -16.48213 -15.78619 -15.43172 -15.12570 -14.63682 -14.59303 -14.42331 -14.08944 -14.00126 -13.84541 -13.68271 -13.60142 -13.40866 -13.01615 -12.75415 -12.44889 -12.36849 -12.21530 -12.15440 -11.92562 -11.80285 -11.24993 -11.18883 -11.12668 -11.08523 -10.97839 -10.92493 -10.90282 -10.80505 -10.62778 -10.37524 -10.18138 -9.87123 -9.72308 -9.66356 -9.57407 -9.32806 -8.98378 -8.71471 -7.04966 -5.83572 -3.13861 0.40072 0.98001 2.93646 3.27071 3.37859 3.43649 3.46186 3.60473 3.76336 3.96403 4.41361 4.50617 4.69231 4.73305 4.77407 4.80508 4.90868 5.00880 5.09853 5.21288 5.25587 5.43309 5.46099 5.46178 5.47639 5.62482 5.65382 5.66305 5.70369 5.74781 5.75728 5.79946 5.83362 5.89337 5.92269 5.92980 6.06886 6.09890 6.22655 6.25706 6.26244 6.39760 6.41578 6.43251 6.52757 6.75785 6.81388 6.82634 7.00948 7.62934 7.70458 7.93406 8.32992 8.35530 9.45403 10.00905 10.35956 11.38213 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008807 B = 0.003375 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3178.650218 B = 8293.804083 C =10676.395291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.002 4.002 3 C -0.130 4.130 4 C -0.137 4.137 5 C 0.341 3.659 6 N -0.518 5.518 7 C 0.206 3.794 8 C -0.239 4.239 9 C 0.570 3.430 10 O -0.540 6.540 11 N -0.698 5.698 12 C 0.141 3.859 13 H 0.087 0.913 14 C -0.124 4.124 15 C -0.114 4.114 16 C -0.120 4.120 17 C -0.133 4.133 18 C 0.173 3.827 19 H 0.051 0.949 20 N -0.722 5.722 21 C -0.242 4.242 22 H 0.071 0.929 23 C -0.009 4.009 24 N -0.928 5.928 25 Si 0.904 3.096 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 C 0.189 3.811 30 N -0.513 5.513 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.180 0.820 41 H 0.402 0.598 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.055 0.945 48 H 0.066 0.934 49 H 0.057 0.943 50 H 0.385 0.615 51 H 0.255 0.745 52 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.014 3.655 -1.950 17.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.004 4.004 3 C -0.187 4.187 4 C -0.195 4.195 5 C 0.075 3.925 6 N -0.230 5.230 7 C 0.039 3.961 8 C -0.247 4.247 9 C 0.355 3.645 10 O -0.419 6.419 11 N -0.347 5.347 12 C 0.036 3.964 13 H 0.105 0.895 14 C -0.163 4.163 15 C -0.152 4.152 16 C -0.158 4.158 17 C -0.174 4.174 18 C 0.062 3.938 19 H 0.069 0.931 20 N -0.363 5.363 21 C -0.373 4.373 22 H 0.089 0.911 23 C -0.206 4.206 24 N -0.576 5.576 25 Si 0.735 3.265 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.219 1.219 29 C 0.022 3.978 30 N -0.226 5.226 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.197 0.803 41 H 0.237 0.763 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.085 0.915 49 H 0.076 0.924 50 H 0.219 0.781 51 H 0.065 0.935 52 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -17.400 3.455 -2.613 17.931 hybrid contribution 1.542 0.355 0.528 1.668 sum -15.858 3.811 -2.085 16.442 Atomic orbital electron populations 1.21840 0.92434 1.02966 1.02066 1.19445 0.96287 0.95257 0.89399 1.21735 1.02096 0.93158 1.01753 1.21854 1.01318 1.00978 0.95353 1.23333 0.88052 0.87104 0.94057 1.68276 1.24116 1.09337 1.21308 1.23458 0.86856 0.99992 0.85764 1.21847 1.05214 0.97474 1.00157 1.17695 0.78803 0.86103 0.81921 1.90759 1.58551 1.16023 1.76554 1.45808 1.50106 1.15828 1.22975 1.21377 0.93693 0.98035 0.83283 0.89483 1.21875 0.98455 1.00816 0.95156 1.21470 0.97256 0.99851 0.96599 1.21585 0.95538 1.00289 0.98387 1.22210 0.98118 1.01466 0.95595 1.20464 0.87146 0.96878 0.89308 0.93088 1.42434 1.28319 1.35253 1.30307 1.19235 1.02810 1.06090 1.09200 0.91101 1.24733 0.99280 0.98663 0.97885 1.69675 1.36819 1.34241 1.16857 0.86180 0.82362 0.80727 0.77261 1.20536 1.21886 1.21905 1.23562 0.90975 0.90736 0.92493 1.68299 1.11531 1.39282 1.03475 0.92749 0.91506 0.91374 0.91704 0.92328 0.91906 0.91355 0.91495 0.92506 0.80283 0.76287 0.91962 0.91856 0.92319 0.91904 0.92355 0.92627 0.91517 0.92407 0.78149 0.93527 0.80944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.37 37.16 0.31 -0.87 16 2 C 0.00 -0.02 0.92 -155.66 -0.14 -0.16 16 3 C -0.13 -1.26 7.66 37.16 0.28 -0.97 16 4 C -0.14 -1.32 8.37 37.15 0.31 -1.01 16 5 C 0.34 4.52 6.25 -157.06 -0.98 3.53 16 6 N -0.52 -7.03 9.77 -10.39 -0.10 -7.13 16 7 C 0.21 2.85 10.88 -16.78 -0.18 2.67 16 8 C -0.24 -3.46 5.91 -104.69 -0.62 -4.08 16 9 C 0.57 9.22 7.75 -12.34 -0.10 9.13 16 10 O -0.54 -10.08 16.10 5.32 0.09 -10.00 16 11 N -0.70 -10.78 4.87 -54.76 -0.27 -11.05 16 12 C 0.14 2.26 1.98 -67.93 -0.13 2.13 16 13 H 0.09 1.61 7.57 -51.93 -0.39 1.21 16 14 C -0.12 -1.66 5.50 -26.73 -0.15 -1.80 16 15 C -0.11 -1.40 5.92 -26.73 -0.16 -1.56 16 16 C -0.12 -1.56 5.92 -26.73 -0.16 -1.72 16 17 C -0.13 -2.20 5.50 -26.76 -0.15 -2.35 16 18 C 0.17 3.09 2.29 -67.95 -0.16 2.94 16 19 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 20 N -0.72 -16.65 4.95 -53.45 -0.26 -16.91 16 21 C -0.24 -6.26 9.93 -15.06 -0.15 -6.41 16 22 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 24 N -0.93 -27.21 13.06 55.49 0.72 -26.48 16 25 Si 0.90 21.66 29.55 -169.99 -5.02 16.64 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 C 0.19 2.59 10.81 -16.78 -0.18 2.41 16 30 N -0.51 -7.15 8.98 -10.39 -0.09 -7.24 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.63 8.01 -51.93 -0.42 0.21 16 34 H 0.06 0.71 8.04 -51.93 -0.42 0.29 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.63 8.04 -51.93 -0.42 0.21 16 37 H 0.07 0.69 8.01 -51.93 -0.42 0.27 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.18 2.24 7.74 -52.49 -0.41 1.83 16 41 H 0.40 5.78 6.74 -40.82 -0.28 5.50 16 42 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 49 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.38 9.87 7.80 -40.82 -0.32 9.55 16 51 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 52 H 0.17 2.04 6.54 -52.49 -0.34 1.70 16 LS Contribution 416.60 15.07 6.28 6.28 Total: -1.00 -30.60 416.60 -9.97 -40.56 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: -8.86 Total: 13.81 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -2.44 Total: 1.53 kcal Atomic # 7 Polarization: -68.82 SS G_CDS: 0.00 Total: -68.82 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -30.60 -9.97 -40.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085440777.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.083 kcal (2) G-P(sol) polarization free energy of solvation -30.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 26.12 seconds