Wall clock time and date at job start Wed Apr 1 2020 06:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47140 * 2 1 4 4 C 1.52995 * 109.47333 * 240.00034 * 2 1 3 5 5 C 1.50703 * 109.47167 * 119.99421 * 2 1 3 6 6 N 1.31873 * 118.94631 * 60.00742 * 5 2 1 7 7 C 1.32151 * 120.96130 * 180.02562 * 6 5 2 8 8 C 1.39945 * 118.92909 * 359.97438 * 7 6 5 9 9 C 1.47829 * 120.94278 * 180.02562 * 8 7 6 10 10 O 1.21553 * 119.99917 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00159 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99828 * 180.27793 * 11 9 8 13 13 H 1.09004 * 109.47372 * 34.71852 * 12 11 9 14 14 C 1.52997 * 109.47036 * 274.72131 * 12 11 9 15 15 C 1.53003 * 109.47241 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47087 * 59.99958 * 15 14 12 17 17 C 1.52997 * 109.47114 * 300.00120 * 16 15 14 18 18 C 1.52999 * 109.46963 * 154.72290 * 12 11 9 19 19 H 1.08995 * 109.47266 * 59.99845 * 18 12 11 20 20 N 1.46503 * 109.47247 * 299.99162 * 18 12 11 21 21 C 1.36937 * 120.00056 * 154.99604 * 20 18 12 22 22 H 1.08005 * 119.99967 * 0.02562 * 21 20 18 23 23 C 1.38806 * 120.00094 * 180.02562 * 21 20 18 24 24 N 1.31618 * 120.00321 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99974 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.47089 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47344 * 120.00318 * 25 23 21 28 28 H 1.48506 * 109.46807 * 240.00352 * 25 23 21 29 29 C 1.39953 * 118.11807 * 0.27864 * 8 7 6 30 30 N 1.31869 * 118.95637 * 240.02417 * 5 2 1 31 31 H 1.09000 * 109.47289 * 300.00202 * 1 2 3 32 32 H 1.08998 * 109.46994 * 60.00193 * 1 2 3 33 33 H 1.09005 * 109.47142 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47584 * 179.97438 * 3 2 1 35 35 H 1.09007 * 109.46763 * 300.00355 * 3 2 1 36 36 H 1.09000 * 109.47195 * 59.99740 * 3 2 1 37 37 H 1.09005 * 109.47090 * 299.99579 * 4 2 1 38 38 H 1.08998 * 109.47266 * 59.99939 * 4 2 1 39 39 H 1.09000 * 109.47570 * 180.02562 * 4 2 1 40 40 H 1.07999 * 120.53451 * 180.02562 * 7 6 5 41 41 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 42 42 H 1.09009 * 109.47238 * 300.00198 * 14 12 11 43 43 H 1.08997 * 109.47293 * 60.00168 * 14 12 11 44 44 H 1.09000 * 109.47191 * 180.02562 * 15 14 12 45 45 H 1.08995 * 109.46928 * 299.99922 * 15 14 12 46 46 H 1.08995 * 109.47266 * 60.00171 * 16 15 14 47 47 H 1.09003 * 109.47147 * 180.02562 * 16 15 14 48 48 H 1.08997 * 109.47293 * 180.02562 * 17 16 15 49 49 H 1.09004 * 109.46812 * 300.00187 * 17 16 15 50 50 H 0.96998 * 119.99938 * 335.01407 * 20 18 12 51 51 H 0.96999 * 120.00722 * 179.97438 * 24 23 21 52 52 H 1.07995 * 120.53723 * 179.70435 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2306 6 7 1.7012 -1.9729 1.4186 7 6 2.1191 -2.6339 2.4839 8 6 2.9247 -1.9728 3.4179 9 6 3.4175 -2.6695 4.6250 10 8 3.1243 -3.8334 4.8171 11 7 4.1918 -2.0143 5.5124 12 6 4.6851 -2.7067 6.7055 13 1 4.8892 -3.7494 6.4622 14 6 3.6274 -2.6381 7.8088 15 6 4.1428 -3.3606 9.0551 16 6 5.4290 -2.6881 9.5392 17 6 6.4867 -2.7566 8.4359 18 6 5.9715 -2.0346 7.1898 19 1 5.7673 -0.9920 7.4331 20 7 6.9844 -2.1004 6.1334 21 6 7.9926 -1.1747 6.0929 22 1 8.0414 -0.3963 6.8401 23 6 8.9520 -1.2367 5.0917 24 7 8.8924 -2.1849 4.1809 25 14 10.3278 0.0257 5.0370 26 1 10.1700 0.9791 6.1647 27 1 11.6377 -0.6643 5.1512 28 1 10.2690 0.7665 3.7513 29 6 3.2462 -0.6316 3.1796 30 7 2.7887 -0.0495 2.0851 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.6767 -1.7489 -1.2492 38 1 1.6767 -0.2074 -2.1392 39 1 3.1300 -0.7216 -1.2490 40 1 1.8441 -3.6679 2.6308 41 1 4.4260 -1.0856 5.3589 42 1 3.4232 -1.5953 8.0522 43 1 2.7109 -3.1168 7.4639 44 1 3.3890 -3.3122 9.8410 45 1 4.3472 -4.4033 8.8121 46 1 5.2245 -1.6454 9.7822 47 1 5.7964 -3.2031 10.4268 48 1 7.4032 -2.2779 8.7808 49 1 6.6911 -3.7994 8.1929 50 1 6.9407 -2.7995 5.4624 51 1 9.5626 -2.2280 3.4810 52 1 3.8612 -0.0825 3.8771 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085440777.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:25 Heat of formation + Delta-G solvation = -20.664262 kcal Electronic energy + Delta-G solvation = -31086.069877 eV Core-core repulsion = 27084.045690 eV Total energy + Delta-G solvation = -4002.024188 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 38.92 seconds Orbital eigenvalues (eV) -42.51904 -40.98403 -39.22863 -37.65346 -35.82273 -35.49171 -34.79278 -33.03978 -32.79360 -30.51746 -29.30548 -28.28128 -28.19643 -26.38348 -25.64159 -25.42125 -23.59372 -22.53251 -21.90963 -21.04906 -20.81601 -19.36676 -18.96372 -18.59743 -17.48519 -17.11483 -16.73270 -16.53140 -15.95184 -15.81761 -15.54634 -15.39149 -15.30355 -14.96543 -14.76718 -14.62509 -14.59472 -14.50667 -14.10775 -13.63099 -13.55755 -13.20464 -13.12220 -12.92340 -12.86652 -12.84323 -12.57325 -12.23768 -12.18176 -12.11914 -12.04671 -12.02320 -12.00888 -11.94918 -11.86916 -11.65148 -11.43415 -11.20093 -11.04215 -10.82482 -10.69392 -10.41294 -10.01835 -9.00122 -7.92258 -5.20823 -0.71131 -0.11490 1.47164 1.48562 1.57319 1.69629 2.02865 2.56109 2.62587 2.66374 2.92544 3.32380 3.41961 3.57448 3.67128 3.77040 3.82535 3.86257 3.98135 3.98813 4.14133 4.26510 4.31561 4.34359 4.44164 4.49647 4.57386 4.60072 4.70435 4.76764 4.78721 4.87644 4.94080 4.96278 4.98890 5.00626 5.02070 5.12902 5.14289 5.25174 5.30058 5.31051 5.31776 5.35439 5.45832 5.48331 5.52431 5.55546 5.66270 5.73851 6.27566 6.42765 6.85636 7.07001 7.34967 8.08713 8.32249 9.30832 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008807 B = 0.003375 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3178.650218 B = 8293.804083 C =10676.395291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.006 4.006 3 C -0.125 4.125 4 C -0.133 4.133 5 C 0.335 3.665 6 N -0.521 5.521 7 C 0.205 3.795 8 C -0.251 4.251 9 C 0.571 3.429 10 O -0.570 6.570 11 N -0.695 5.695 12 C 0.148 3.852 13 H 0.058 0.942 14 C -0.115 4.115 15 C -0.111 4.111 16 C -0.110 4.110 17 C -0.128 4.128 18 C 0.172 3.828 19 H 0.061 0.939 20 N -0.732 5.732 21 C -0.227 4.227 22 H 0.081 0.919 23 C -0.072 4.072 24 N -0.969 5.969 25 Si 0.964 3.036 26 H -0.262 1.262 27 H -0.301 1.301 28 H -0.298 1.298 29 C 0.190 3.810 30 N -0.523 5.523 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.047 0.953 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.041 0.959 40 H 0.188 0.812 41 H 0.407 0.593 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.087 0.913 45 H 0.054 0.946 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.050 0.950 49 H 0.041 0.959 50 H 0.368 0.632 51 H 0.246 0.754 52 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.560 5.412 -1.060 19.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.008 4.008 3 C -0.183 4.183 4 C -0.191 4.191 5 C 0.069 3.931 6 N -0.234 5.234 7 C 0.037 3.963 8 C -0.258 4.258 9 C 0.357 3.643 10 O -0.451 6.451 11 N -0.343 5.343 12 C 0.043 3.957 13 H 0.076 0.924 14 C -0.154 4.154 15 C -0.149 4.149 16 C -0.148 4.148 17 C -0.169 4.169 18 C 0.063 3.937 19 H 0.079 0.921 20 N -0.371 5.371 21 C -0.359 4.359 22 H 0.099 0.901 23 C -0.265 4.265 24 N -0.621 5.621 25 Si 0.794 3.206 26 H -0.186 1.186 27 H -0.229 1.229 28 H -0.226 1.226 29 C 0.023 3.977 30 N -0.236 5.236 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.112 0.888 39 H 0.060 0.940 40 H 0.205 0.795 41 H 0.244 0.756 42 H 0.099 0.901 43 H 0.078 0.922 44 H 0.105 0.895 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.200 0.800 51 H 0.055 0.945 52 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -18.974 5.251 -1.664 19.757 hybrid contribution 1.970 -0.199 0.272 1.998 sum -17.004 5.052 -1.392 17.793 Atomic orbital electron populations 1.21814 0.90861 1.02887 1.03148 1.19677 0.97469 0.95382 0.88305 1.21703 1.00988 0.92810 1.02749 1.21844 1.00323 1.00915 0.96051 1.24052 0.87245 0.87134 0.94677 1.68367 1.24365 1.09600 1.21097 1.23660 0.86470 1.00442 0.85681 1.21707 1.06325 0.97898 0.99907 1.17896 0.78431 0.85746 0.82212 1.90736 1.59799 1.17263 1.77273 1.45784 1.49712 1.15986 1.22859 1.21252 0.93903 0.96134 0.84384 0.92373 1.21818 0.97045 1.02129 0.94411 1.21477 0.97595 0.99049 0.96733 1.21520 0.94402 1.01600 0.97300 1.22083 0.98800 0.99875 0.96146 1.20682 0.86681 0.97812 0.88529 0.92060 1.42604 1.29003 1.34243 1.31237 1.19610 1.02446 1.05715 1.08110 0.90116 1.25437 1.01954 1.00724 0.98346 1.69837 1.37744 1.36553 1.17927 0.85208 0.79280 0.78809 0.77285 1.18626 1.22891 1.22602 1.23807 0.90672 0.90515 0.92701 1.68393 1.12052 1.39480 1.03715 0.93111 0.88970 0.92029 0.93363 0.89787 0.92441 0.92027 0.88816 0.94018 0.79491 0.75631 0.90136 0.92194 0.89454 0.92746 0.90893 0.90947 0.93119 0.94057 0.80044 0.94463 0.79575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 8.37 71.98 0.60 -1.41 16 2 C -0.01 -0.12 0.92 -52.93 -0.05 -0.17 16 3 C -0.12 -2.23 7.66 71.98 0.55 -1.68 16 4 C -0.13 -2.39 8.37 71.98 0.60 -1.79 16 5 C 0.33 8.73 6.25 138.70 0.87 9.59 16 6 N -0.52 -14.10 9.77 -186.79 -1.82 -15.92 16 7 C 0.20 5.71 10.88 85.06 0.93 6.64 16 8 C -0.25 -7.33 5.91 -19.91 -0.12 -7.45 16 9 C 0.57 18.80 7.75 86.78 0.67 19.48 16 10 O -0.57 -21.81 16.10 -3.88 -0.06 -21.87 16 11 N -0.69 -21.47 4.87 -445.43 -2.17 -23.64 16 12 C 0.15 4.73 1.98 44.99 0.09 4.82 16 13 H 0.06 2.22 7.57 -2.39 -0.02 2.20 16 14 C -0.12 -2.86 5.50 30.59 0.17 -2.69 16 15 C -0.11 -2.43 5.92 30.59 0.18 -2.25 16 16 C -0.11 -2.56 5.92 30.59 0.18 -2.38 16 17 C -0.13 -4.15 5.50 30.58 0.17 -3.98 16 18 C 0.17 6.04 2.29 44.98 0.10 6.15 16 19 H 0.06 2.06 8.08 -2.39 -0.02 2.05 16 20 N -0.73 -34.12 4.95 -323.01 -1.60 -35.72 16 21 C -0.23 -11.68 9.93 84.03 0.83 -10.85 16 22 H 0.08 3.95 7.83 -2.91 -0.02 3.92 16 23 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 24 N -0.97 -58.42 13.06 21.65 0.28 -58.13 16 25 Si 0.96 44.90 29.55 68.60 2.03 46.92 16 26 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 27 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 28 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 29 C 0.19 5.18 10.81 85.06 0.92 6.10 16 30 N -0.52 -14.46 8.98 -186.79 -1.68 -16.14 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 1.05 8.01 -2.38 -0.02 1.03 16 34 H 0.05 1.02 8.04 -2.39 -0.02 1.00 16 35 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.06 1.08 8.04 -2.39 -0.02 1.06 16 37 H 0.06 1.18 8.01 -2.38 -0.02 1.16 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.19 4.78 7.74 -2.91 -0.02 4.76 16 41 H 0.41 11.57 6.74 -92.71 -0.62 10.94 16 42 H 0.08 1.73 8.14 -2.38 -0.02 1.72 16 43 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 49 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.37 19.53 7.80 -92.71 -0.72 18.80 16 51 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 52 H 0.19 4.36 6.54 -2.91 -0.02 4.34 16 Total: -1.00 -67.10 416.60 1.72 -65.39 By element: Atomic # 1 Polarization: 44.94 SS G_CDS: -0.43 Total: 44.51 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 7.17 Total: 14.60 kcal Atomic # 7 Polarization: -142.56 SS G_CDS: -6.99 Total: -149.55 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.06 Total: -21.87 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -67.10 1.72 -65.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085440777.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.723 kcal (2) G-P(sol) polarization free energy of solvation -67.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 38.92 seconds