Wall clock time and date at job start Wed Apr 1 2020 06:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47228 * 2 1 4 4 C 1.52999 * 109.47418 * 120.00120 * 2 1 3 5 5 C 1.50705 * 109.47152 * 65.00081 * 4 2 1 6 6 N 1.30857 * 125.41644 * 304.98128 * 5 4 2 7 7 C 1.33320 * 109.68656 * 179.78389 * 6 5 4 8 8 C 1.36663 * 107.78444 * 0.37491 * 7 6 5 9 9 C 1.46763 * 126.84876 * 179.89904 * 8 7 6 10 10 O 1.21688 * 119.99528 * 359.68237 * 9 8 7 11 11 N 1.34776 * 120.00456 * 179.68515 * 9 8 7 12 12 C 1.47760 * 125.81913 * 179.97438 * 11 9 8 13 13 C 1.55958 * 104.11862 * 154.08396 * 12 11 9 14 14 H 1.09004 * 113.25998 * 160.74849 * 13 12 11 15 15 C 1.52877 * 106.49291 * 286.20997 * 13 12 11 16 16 C 1.51609 * 111.55721 * 168.38315 * 15 13 12 17 17 N 1.44328 * 113.11269 * 320.91615 * 16 15 13 18 18 C 1.36933 * 116.35526 * 187.25583 * 17 16 15 19 19 H 1.07998 * 120.00200 * 152.58599 * 18 17 16 20 20 C 1.38820 * 119.99810 * 332.59160 * 18 17 16 21 21 N 1.31611 * 119.99949 * 335.13124 * 20 18 17 22 22 Si 1.86797 * 119.99841 * 155.13265 * 20 18 17 23 23 H 1.48503 * 109.47531 * 59.99564 * 22 20 18 24 24 H 1.48496 * 109.47210 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.47242 * 299.99718 * 22 20 18 26 26 C 1.43989 * 127.29029 * 7.27786 * 17 16 15 27 27 C 1.49953 * 116.09685 * 2.48404 * 26 17 16 28 28 H 1.09004 * 108.82594 * 141.05271 * 27 26 17 29 29 C 1.47613 * 125.81579 * 359.97037 * 11 9 8 30 30 N 1.34494 * 125.42164 * 124.99838 * 5 4 2 31 31 H 0.97003 * 126.46718 * 359.96106 * 30 5 4 32 32 H 1.08999 * 109.46778 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46873 * 299.99736 * 1 2 3 34 34 H 1.08998 * 109.47366 * 60.00141 * 1 2 3 35 35 H 1.09004 * 109.47380 * 240.00325 * 2 1 3 36 36 H 1.09000 * 109.46808 * 180.02562 * 3 2 1 37 37 H 1.08998 * 109.46832 * 300.00185 * 3 2 1 38 38 H 1.08999 * 109.46521 * 60.00334 * 3 2 1 39 39 H 1.08990 * 109.47180 * 305.00208 * 4 2 1 40 40 H 1.09001 * 109.46941 * 184.99743 * 4 2 1 41 41 H 1.07996 * 126.10661 * 180.27035 * 7 6 5 42 42 H 1.08997 * 110.49890 * 272.74785 * 12 11 9 43 43 H 1.08999 * 110.49929 * 35.42852 * 12 11 9 44 44 H 1.09000 * 109.06834 * 47.84633 * 15 13 12 45 45 H 1.09000 * 109.00192 * 288.87916 * 15 13 12 46 46 H 1.08994 * 108.75454 * 199.97590 * 16 15 13 47 47 H 1.09002 * 108.65993 * 81.78165 * 16 15 13 48 48 H 0.97008 * 120.00013 * 180.02562 * 21 20 18 49 49 H 1.09002 * 108.16026 * 240.75725 * 26 17 16 50 50 H 1.09000 * 107.99679 * 124.07767 * 26 17 16 51 51 H 1.08999 * 110.08483 * 299.88109 * 29 11 9 52 52 H 1.09003 * 110.07846 * 61.38301 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 -2.1734 1.1888 6 7 0.4209 -2.6189 1.0336 7 6 0.4277 -3.9520 1.0198 8 6 1.7203 -4.3645 1.1831 9 6 2.2025 -5.7498 1.2325 10 8 1.4155 -6.6720 1.1281 11 7 3.5169 -6.0005 1.3936 12 6 4.1400 -7.3386 1.4614 13 6 5.6038 -7.1015 0.9784 14 1 6.2889 -7.8959 1.2747 15 6 5.5329 -6.8898 -0.5340 16 6 6.8462 -6.3711 -1.0861 17 7 7.4818 -5.4051 -0.2224 18 6 8.5915 -4.7788 -0.7237 19 1 8.8545 -3.7893 -0.3803 20 6 9.3783 -5.4158 -1.6735 21 7 9.3882 -6.7299 -1.7458 22 14 10.4231 -4.4079 -2.8490 23 1 11.3890 -3.5880 -2.0743 24 1 11.1647 -5.3188 -3.7576 25 1 9.5466 -3.5154 -3.6494 26 6 7.0800 -5.0264 1.1075 27 6 5.8993 -5.7574 1.6732 28 1 6.0793 -5.9515 2.7306 29 6 4.5793 -4.9852 1.5324 30 7 2.4835 -3.2176 1.2862 31 1 3.4451 -3.1736 1.4060 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 3.1300 1.4425 -0.0005 37 1 1.6767 1.9563 -0.8900 38 1 1.6767 1.9563 0.8900 39 1 1.6055 -0.2618 2.1369 40 1 3.1264 -0.6443 1.2950 41 1 -0.4345 -4.5916 0.9024 42 1 4.1316 -7.7121 2.4854 43 1 3.6264 -8.0330 0.7965 44 1 4.7445 -6.1708 -0.7563 45 1 5.2948 -7.8388 -1.0144 46 1 6.6602 -5.9067 -2.0544 47 1 7.5227 -7.2142 -1.2265 48 1 9.9384 -7.1751 -2.4093 49 1 6.8494 -3.9611 1.1022 50 1 7.9283 -5.1846 1.7734 51 1 4.6094 -4.3514 0.6461 52 1 4.4031 -4.3781 2.4204 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087965612.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:24:56 Heat of formation + Delta-G solvation = 46.652696 kcal Electronic energy + Delta-G solvation = -31671.848199 eV Core-core repulsion = 27672.743094 eV Total energy + Delta-G solvation = -3999.105105 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.47840 -40.32926 -38.31278 -36.55587 -35.78921 -33.32145 -32.41869 -31.66924 -30.86381 -30.27454 -28.15984 -27.27700 -27.13685 -25.73470 -24.03319 -22.71750 -22.02630 -21.50915 -21.17958 -20.73653 -19.67353 -18.04642 -17.73632 -17.21760 -16.34846 -16.19088 -15.75995 -15.33887 -15.22842 -14.98693 -14.39747 -14.34324 -14.06122 -13.90059 -13.84560 -13.50670 -13.32484 -13.18339 -12.87606 -12.73420 -12.59691 -12.47798 -12.39466 -12.11228 -11.90119 -11.46433 -11.41679 -11.22580 -11.08402 -10.92981 -10.83369 -10.76091 -10.40695 -10.38067 -10.31975 -10.26156 -9.96199 -9.83782 -9.75208 -9.67850 -8.87288 -8.58226 -8.49951 -6.71808 -5.72188 -3.37592 1.18435 2.60562 2.66555 2.92440 3.27387 3.32235 3.39372 3.40973 4.05797 4.32520 4.42043 4.50523 4.52870 4.62439 4.71979 4.83304 4.91696 5.11415 5.15896 5.17595 5.25407 5.27162 5.31780 5.38221 5.40395 5.46274 5.46422 5.54817 5.64932 5.69794 5.75298 5.78104 5.83600 5.85142 5.95394 6.00042 6.07495 6.14090 6.15483 6.31112 6.42133 6.47419 6.54457 6.56249 6.63233 6.70518 7.02188 7.20980 7.35576 7.72295 7.75442 7.83310 8.02224 8.43755 9.19208 9.88039 10.17750 11.14134 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009637 B = 0.003340 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.832618 B = 8382.332933 C =10601.983336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.086 4.086 3 C -0.148 4.148 4 C -0.036 4.036 5 C 0.240 3.760 6 N -0.488 5.488 7 C 0.067 3.933 8 C -0.083 4.083 9 C 0.609 3.391 10 O -0.532 6.532 11 N -0.614 5.614 12 C 0.108 3.892 13 C -0.081 4.081 14 H 0.105 0.895 15 C -0.121 4.121 16 C 0.155 3.845 17 N -0.585 5.585 18 C -0.275 4.275 19 H 0.065 0.935 20 C 0.009 3.991 21 N -0.886 5.886 22 Si 0.899 3.101 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.176 3.824 27 C -0.096 4.096 28 H 0.077 0.923 29 C 0.098 3.902 30 N -0.552 5.552 31 H 0.423 0.577 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.183 0.817 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.046 0.954 45 H 0.059 0.941 46 H 0.017 0.983 47 H 0.082 0.918 48 H 0.255 0.745 49 H 0.011 0.989 50 H 0.027 0.973 51 H 0.072 0.928 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.430 8.835 7.835 17.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.106 4.106 3 C -0.205 4.205 4 C -0.075 4.075 5 C -0.024 4.024 6 N -0.208 5.208 7 C -0.087 4.087 8 C -0.199 4.199 9 C 0.398 3.602 10 O -0.409 6.409 11 N -0.347 5.347 12 C -0.014 4.014 13 C -0.100 4.100 14 H 0.123 0.877 15 C -0.159 4.159 16 C 0.031 3.969 17 N -0.309 5.309 18 C -0.405 4.405 19 H 0.083 0.917 20 C -0.191 4.191 21 N -0.530 5.530 22 Si 0.728 3.272 23 H -0.208 1.208 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.050 3.950 27 C -0.115 4.115 28 H 0.095 0.905 29 C -0.025 4.025 30 N -0.160 5.160 31 H 0.267 0.733 32 H 0.110 0.890 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.200 0.800 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.064 0.936 45 H 0.077 0.923 46 H 0.035 0.965 47 H 0.100 0.900 48 H 0.065 0.935 49 H 0.029 0.971 50 H 0.045 0.955 51 H 0.090 0.910 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.594 8.652 7.627 18.601 hybrid contribution 1.856 0.053 -0.513 1.926 sum -12.738 8.705 7.114 16.990 Atomic orbital electron populations 1.22075 0.93959 1.04785 1.00718 1.20997 0.97395 0.95584 0.96605 1.21858 1.00989 0.95585 1.02110 1.20275 1.01324 0.85189 1.00744 1.23419 0.85791 0.91703 1.01484 1.70107 1.19728 1.09954 1.21008 1.22657 0.94888 0.91153 0.99996 1.21087 0.93289 0.86641 1.18926 1.16478 0.80679 0.86276 0.76728 1.90840 1.54232 1.44276 1.51511 1.48582 1.05378 1.09035 1.71723 1.22731 0.93611 0.83897 1.01178 1.22273 0.93914 0.97050 0.96801 0.87681 1.21595 1.00024 1.00528 0.93722 1.20260 0.90741 0.95086 0.90862 1.42665 1.30063 1.47666 1.10553 1.19057 1.02906 0.97332 1.21156 0.91730 1.24970 0.97643 0.94957 1.01532 1.69975 1.40676 1.06912 1.35395 0.86428 0.79885 0.79616 0.81247 1.20771 1.21597 1.21077 1.19342 0.92746 0.95188 0.87769 1.21496 0.93435 0.95822 1.00774 0.90468 1.22349 0.87956 0.91951 1.00285 1.43891 1.11505 1.06062 1.54579 0.73291 0.89027 0.93114 0.93549 0.91106 0.92581 0.92310 0.92487 0.88706 0.90015 0.80005 0.91402 0.89960 0.93564 0.92277 0.96474 0.90042 0.93512 0.97125 0.95514 0.90980 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 8.92 37.16 0.33 -1.10 16 2 C -0.09 -0.72 2.91 -90.62 -0.26 -0.99 16 3 C -0.15 -1.02 9.19 37.16 0.34 -0.67 16 4 C -0.04 -0.29 5.32 -27.88 -0.15 -0.44 16 5 C 0.24 2.65 7.36 -155.61 -1.15 1.50 16 6 N -0.49 -6.17 8.51 -10.58 -0.09 -6.26 16 7 C 0.07 0.89 11.66 -17.47 -0.20 0.69 16 8 C -0.08 -1.14 6.90 -82.14 -0.57 -1.70 16 9 C 0.61 9.37 7.83 -12.82 -0.10 9.27 16 10 O -0.53 -9.58 17.16 5.20 0.09 -9.49 16 11 N -0.61 -8.63 2.81 -171.07 -0.48 -9.11 16 12 C 0.11 1.47 6.23 -1.77 -0.01 1.46 16 13 C -0.08 -1.23 3.78 -88.50 -0.33 -1.57 16 14 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 15 C -0.12 -2.15 4.97 -27.50 -0.14 -2.29 16 16 C 0.16 3.52 5.13 -5.90 -0.03 3.48 16 17 N -0.58 -13.56 3.23 -179.58 -0.58 -14.14 16 18 C -0.27 -7.17 9.26 -15.06 -0.14 -7.31 16 19 H 0.06 1.66 7.94 -52.49 -0.42 1.24 16 20 C 0.01 0.25 4.94 -17.43 -0.09 0.16 16 21 N -0.89 -24.57 10.92 55.49 0.61 -23.97 16 22 Si 0.90 20.95 29.62 -169.99 -5.04 15.92 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.18 3.26 5.67 -6.89 -0.04 3.23 16 27 C -0.10 -1.39 2.68 -91.23 -0.24 -1.64 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 29 C 0.10 1.24 3.79 -3.14 -0.01 1.23 16 30 N -0.55 -6.27 5.69 -7.02 -0.04 -6.31 16 31 H 0.42 4.19 5.15 -40.82 -0.21 3.98 16 32 H 0.09 1.01 5.49 -51.93 -0.29 0.72 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.18 2.18 8.06 -52.49 -0.42 1.75 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.08 1.18 7.92 -51.93 -0.41 0.77 16 44 H 0.05 0.83 6.77 -51.93 -0.35 0.48 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.02 0.43 8.12 -51.93 -0.42 0.00 16 47 H 0.08 2.11 5.75 -51.93 -0.30 1.81 16 48 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 49 H 0.01 0.20 7.78 -51.93 -0.40 -0.21 16 50 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.07 0.98 6.87 -51.93 -0.36 0.63 16 52 H 0.06 0.66 7.26 -51.93 -0.38 0.28 16 LS Contribution 397.04 15.07 5.98 5.98 Total: -1.00 -30.60 397.04 -10.92 -41.52 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -8.59 Total: 2.53 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -2.79 Total: 3.33 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: -0.58 Total: -59.79 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.04 Total: 15.92 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.60 -10.92 -41.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087965612.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.170 kcal (2) G-P(sol) polarization free energy of solvation -30.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds