Wall clock time and date at job start Wed Apr 1 2020 06:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47228 * 2 1 4 4 C 1.52999 * 109.47418 * 120.00120 * 2 1 3 5 5 C 1.50705 * 109.47152 * 65.00081 * 4 2 1 6 6 N 1.30857 * 125.41644 * 304.98128 * 5 4 2 7 7 C 1.33320 * 109.68656 * 179.78389 * 6 5 4 8 8 C 1.36663 * 107.78444 * 0.37491 * 7 6 5 9 9 C 1.46763 * 126.84876 * 179.89904 * 8 7 6 10 10 O 1.21688 * 119.99528 * 359.68237 * 9 8 7 11 11 N 1.34776 * 120.00456 * 179.68515 * 9 8 7 12 12 C 1.47760 * 125.81913 * 179.97438 * 11 9 8 13 13 C 1.55958 * 104.11862 * 154.08396 * 12 11 9 14 14 H 1.09004 * 113.25998 * 160.74849 * 13 12 11 15 15 C 1.52877 * 106.49291 * 286.20997 * 13 12 11 16 16 C 1.51609 * 111.55721 * 168.38315 * 15 13 12 17 17 N 1.44328 * 113.11269 * 320.91615 * 16 15 13 18 18 C 1.36933 * 116.35526 * 187.25583 * 17 16 15 19 19 H 1.07998 * 120.00200 * 152.58599 * 18 17 16 20 20 C 1.38820 * 119.99810 * 332.59160 * 18 17 16 21 21 N 1.31611 * 119.99949 * 335.13124 * 20 18 17 22 22 Si 1.86797 * 119.99841 * 155.13265 * 20 18 17 23 23 H 1.48503 * 109.47531 * 59.99564 * 22 20 18 24 24 H 1.48496 * 109.47210 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.47242 * 299.99718 * 22 20 18 26 26 C 1.43989 * 127.29029 * 7.27786 * 17 16 15 27 27 C 1.49953 * 116.09685 * 2.48404 * 26 17 16 28 28 H 1.09004 * 108.82594 * 141.05271 * 27 26 17 29 29 C 1.47613 * 125.81579 * 359.97037 * 11 9 8 30 30 N 1.34494 * 125.42164 * 124.99838 * 5 4 2 31 31 H 0.97003 * 126.46718 * 359.96106 * 30 5 4 32 32 H 1.08999 * 109.46778 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46873 * 299.99736 * 1 2 3 34 34 H 1.08998 * 109.47366 * 60.00141 * 1 2 3 35 35 H 1.09004 * 109.47380 * 240.00325 * 2 1 3 36 36 H 1.09000 * 109.46808 * 180.02562 * 3 2 1 37 37 H 1.08998 * 109.46832 * 300.00185 * 3 2 1 38 38 H 1.08999 * 109.46521 * 60.00334 * 3 2 1 39 39 H 1.08990 * 109.47180 * 305.00208 * 4 2 1 40 40 H 1.09001 * 109.46941 * 184.99743 * 4 2 1 41 41 H 1.07996 * 126.10661 * 180.27035 * 7 6 5 42 42 H 1.08997 * 110.49890 * 272.74785 * 12 11 9 43 43 H 1.08999 * 110.49929 * 35.42852 * 12 11 9 44 44 H 1.09000 * 109.06834 * 47.84633 * 15 13 12 45 45 H 1.09000 * 109.00192 * 288.87916 * 15 13 12 46 46 H 1.08994 * 108.75454 * 199.97590 * 16 15 13 47 47 H 1.09002 * 108.65993 * 81.78165 * 16 15 13 48 48 H 0.97008 * 120.00013 * 180.02562 * 21 20 18 49 49 H 1.09002 * 108.16026 * 240.75725 * 26 17 16 50 50 H 1.09000 * 107.99679 * 124.07767 * 26 17 16 51 51 H 1.08999 * 110.08483 * 299.88109 * 29 11 9 52 52 H 1.09003 * 110.07846 * 61.38301 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 -2.1734 1.1888 6 7 0.4209 -2.6189 1.0336 7 6 0.4277 -3.9520 1.0198 8 6 1.7203 -4.3645 1.1831 9 6 2.2025 -5.7498 1.2325 10 8 1.4155 -6.6720 1.1281 11 7 3.5169 -6.0005 1.3936 12 6 4.1400 -7.3386 1.4614 13 6 5.6038 -7.1015 0.9784 14 1 6.2889 -7.8959 1.2747 15 6 5.5329 -6.8898 -0.5340 16 6 6.8462 -6.3711 -1.0861 17 7 7.4818 -5.4051 -0.2224 18 6 8.5915 -4.7788 -0.7237 19 1 8.8545 -3.7893 -0.3803 20 6 9.3783 -5.4158 -1.6735 21 7 9.3882 -6.7299 -1.7458 22 14 10.4231 -4.4079 -2.8490 23 1 11.3890 -3.5880 -2.0743 24 1 11.1647 -5.3188 -3.7576 25 1 9.5466 -3.5154 -3.6494 26 6 7.0800 -5.0264 1.1075 27 6 5.8993 -5.7574 1.6732 28 1 6.0793 -5.9515 2.7306 29 6 4.5793 -4.9852 1.5324 30 7 2.4835 -3.2176 1.2862 31 1 3.4451 -3.1736 1.4060 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 3.1300 1.4425 -0.0005 37 1 1.6767 1.9563 -0.8900 38 1 1.6767 1.9563 0.8900 39 1 1.6055 -0.2618 2.1369 40 1 3.1264 -0.6443 1.2950 41 1 -0.4345 -4.5916 0.9024 42 1 4.1316 -7.7121 2.4854 43 1 3.6264 -8.0330 0.7965 44 1 4.7445 -6.1708 -0.7563 45 1 5.2948 -7.8388 -1.0144 46 1 6.6602 -5.9067 -2.0544 47 1 7.5227 -7.2142 -1.2265 48 1 9.9384 -7.1751 -2.4093 49 1 6.8494 -3.9611 1.1022 50 1 7.9283 -5.1846 1.7734 51 1 4.6094 -4.3514 0.6461 52 1 4.4031 -4.3781 2.4204 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087965612.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:24:53 Heat of formation + Delta-G solvation = 30.403277 kcal Electronic energy + Delta-G solvation = -31672.552827 eV Core-core repulsion = 27672.743094 eV Total energy + Delta-G solvation = -3999.809733 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.92 seconds Orbital eigenvalues (eV) -43.42230 -41.53636 -39.61246 -37.37332 -37.22634 -34.57355 -33.77443 -33.06722 -32.21171 -31.46493 -29.45726 -28.10972 -27.84433 -27.17009 -25.55313 -24.04440 -23.50244 -22.60366 -22.18539 -21.59273 -20.52454 -19.49803 -18.91733 -18.79489 -17.43214 -17.38560 -16.88047 -16.74215 -16.39922 -16.03407 -15.76098 -15.60792 -15.36537 -15.18178 -14.84589 -14.73966 -14.62943 -14.26763 -14.09365 -13.90425 -13.74437 -13.45725 -13.36281 -13.03688 -13.02574 -12.92842 -12.72354 -12.57970 -12.29566 -12.19763 -12.09783 -11.91842 -11.72193 -11.58707 -11.56592 -11.47324 -11.29156 -11.26848 -11.17332 -10.84406 -10.54944 -9.97378 -9.50138 -8.67083 -7.70253 -5.40179 0.17331 1.45256 1.49104 1.54632 1.59775 1.70137 1.93871 2.20101 2.50282 3.15992 3.20492 3.31929 3.38530 3.60351 3.69527 3.78387 3.87170 3.99298 4.06315 4.08273 4.13826 4.24885 4.33923 4.37156 4.42237 4.53439 4.61410 4.64796 4.71658 4.72902 4.79016 4.80471 4.87767 4.90641 4.93568 4.97872 5.02122 5.13657 5.14231 5.19698 5.21768 5.28846 5.34798 5.38254 5.43244 5.51455 5.68490 5.74930 5.91943 6.17316 6.24572 6.43421 6.80258 6.89649 7.21158 8.03728 8.22746 9.11131 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009637 B = 0.003340 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.832618 B = 8382.332933 C =10601.983336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.085 4.085 3 C -0.144 4.144 4 C -0.036 4.036 5 C 0.249 3.751 6 N -0.504 5.504 7 C 0.061 3.939 8 C -0.100 4.100 9 C 0.609 3.391 10 O -0.566 6.566 11 N -0.613 5.613 12 C 0.115 3.885 13 C -0.079 4.079 14 H 0.107 0.893 15 C -0.109 4.109 16 C 0.166 3.834 17 N -0.596 5.596 18 C -0.285 4.285 19 H 0.067 0.933 20 C -0.041 4.041 21 N -0.915 5.915 22 Si 0.956 3.044 23 H -0.272 1.272 24 H -0.295 1.295 25 H -0.284 1.284 26 C 0.172 3.828 27 C -0.091 4.091 28 H 0.108 0.892 29 C 0.103 3.897 30 N -0.546 5.546 31 H 0.431 0.569 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.112 0.888 40 H 0.103 0.897 41 H 0.186 0.814 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.044 0.956 45 H 0.063 0.937 46 H -0.017 1.017 47 H 0.049 0.951 48 H 0.249 0.751 49 H 0.027 0.973 50 H 0.018 0.982 51 H 0.064 0.936 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.711 10.764 9.637 19.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.104 4.104 3 C -0.201 4.201 4 C -0.075 4.075 5 C -0.015 4.015 6 N -0.223 5.223 7 C -0.094 4.094 8 C -0.216 4.216 9 C 0.399 3.601 10 O -0.446 6.446 11 N -0.345 5.345 12 C -0.007 4.007 13 C -0.098 4.098 14 H 0.125 0.875 15 C -0.147 4.147 16 C 0.040 3.960 17 N -0.321 5.321 18 C -0.415 4.415 19 H 0.085 0.915 20 C -0.239 4.239 21 N -0.560 5.560 22 Si 0.784 3.216 23 H -0.197 1.197 24 H -0.222 1.222 25 H -0.211 1.211 26 C 0.046 3.954 27 C -0.110 4.110 28 H 0.126 0.874 29 C -0.019 4.019 30 N -0.155 5.155 31 H 0.276 0.724 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.130 0.870 40 H 0.121 0.879 41 H 0.203 0.797 42 H 0.110 0.890 43 H 0.092 0.908 44 H 0.063 0.937 45 H 0.082 0.918 46 H 0.001 0.999 47 H 0.066 0.934 48 H 0.059 0.941 49 H 0.044 0.956 50 H 0.036 0.964 51 H 0.082 0.918 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.853 10.611 9.457 20.558 hybrid contribution 1.927 -0.470 -1.087 2.262 sum -12.926 10.141 8.371 18.438 Atomic orbital electron populations 1.22033 0.94621 1.03521 1.01175 1.20967 0.96796 0.96551 0.96128 1.21820 1.01302 0.94357 1.02649 1.20480 1.02813 0.83066 1.01148 1.24044 0.85290 0.92771 0.99371 1.70173 1.20775 1.09564 1.21832 1.22866 0.95194 0.91696 0.99617 1.20866 0.93665 0.86519 1.20542 1.16645 0.80694 0.86584 0.76192 1.90816 1.55094 1.45403 1.53262 1.48590 1.05272 1.09487 1.71182 1.22680 0.91914 0.83776 1.02298 1.22210 0.95274 0.97800 0.94556 0.87536 1.21419 0.96925 1.00335 0.95993 1.19952 0.92327 0.93608 0.90083 1.42884 1.29379 1.47309 1.12490 1.19407 1.03264 0.97615 1.21223 0.91520 1.25665 0.99369 0.95771 1.03083 1.70132 1.41784 1.08175 1.35914 0.85519 0.78562 0.78188 0.79329 1.19695 1.22157 1.21070 1.19481 0.94126 0.96462 0.85306 1.21413 0.92699 0.94942 1.01965 0.87362 1.22355 0.86500 0.91519 1.01540 1.43819 1.11792 1.05407 1.54437 0.72420 0.91062 0.92357 0.93434 0.92708 0.92027 0.92419 0.91363 0.87035 0.87888 0.79680 0.88953 0.90804 0.93732 0.91798 0.99909 0.93355 0.94116 0.95564 0.96407 0.91812 0.88409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 8.92 71.98 0.64 -1.96 16 2 C -0.08 -1.25 2.91 -10.79 -0.03 -1.28 16 3 C -0.14 -1.60 9.19 71.98 0.66 -0.94 16 4 C -0.04 -0.48 5.32 29.85 0.16 -0.32 16 5 C 0.25 4.98 7.36 138.20 1.02 6.00 16 6 N -0.50 -12.15 8.51 -187.39 -1.59 -13.74 16 7 C 0.06 1.57 11.66 84.10 0.98 2.55 16 8 C -0.10 -2.59 6.90 40.01 0.28 -2.31 16 9 C 0.61 17.95 7.83 86.47 0.68 18.62 16 10 O -0.57 -20.14 17.16 -4.31 -0.07 -20.21 16 11 N -0.61 -15.86 2.81 -813.37 -2.28 -18.15 16 12 C 0.11 2.89 6.23 87.16 0.54 3.43 16 13 C -0.08 -2.27 3.78 -9.42 -0.04 -2.30 16 14 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 15 C -0.11 -3.86 4.97 30.10 0.15 -3.71 16 16 C 0.17 7.69 5.13 86.33 0.44 8.14 16 17 N -0.60 -27.63 3.23 -722.07 -2.33 -29.96 16 18 C -0.28 -14.89 9.26 84.04 0.78 -14.11 16 19 H 0.07 3.39 7.94 -2.91 -0.02 3.36 16 20 C -0.04 -2.24 4.94 84.87 0.42 -1.82 16 21 N -0.92 -52.15 10.92 21.65 0.24 -51.91 16 22 Si 0.96 43.49 29.62 68.60 2.03 45.52 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 24 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 25 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 26 C 0.17 6.06 5.67 85.87 0.49 6.54 16 27 C -0.09 -2.38 2.68 -11.19 -0.03 -2.41 16 28 H 0.11 2.27 8.14 -2.38 -0.02 2.25 16 29 C 0.10 2.31 3.79 86.36 0.33 2.64 16 30 N -0.55 -11.16 5.69 -176.11 -1.00 -12.16 16 31 H 0.43 7.21 5.15 -92.71 -0.48 6.73 16 32 H 0.07 1.51 5.49 -2.39 -0.01 1.50 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.19 4.45 8.06 -2.91 -0.02 4.43 16 42 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.07 2.02 7.92 -2.39 -0.02 2.00 16 44 H 0.04 1.59 6.77 -2.39 -0.02 1.57 16 45 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 46 H -0.02 -0.89 8.12 -2.39 -0.02 -0.91 16 47 H 0.05 2.62 5.75 -2.39 -0.01 2.61 16 48 H 0.25 13.86 8.31 -92.70 -0.77 13.09 16 49 H 0.03 0.87 7.78 -2.39 -0.02 0.85 16 50 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.06 1.57 6.87 -2.39 -0.02 1.55 16 52 H 0.10 1.58 7.26 -2.39 -0.02 1.57 16 Total: -1.00 -67.95 397.04 2.89 -65.06 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.44 Total: 18.79 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: 7.46 Total: 16.76 kcal Atomic # 7 Polarization: -118.95 SS G_CDS: -6.97 Total: -125.92 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.07 Total: -20.21 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -67.95 2.89 -65.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087965612.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.463 kcal (2) G-P(sol) polarization free energy of solvation -67.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.92 seconds