Wall clock time and date at job start Wed Apr 1 2020 05:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46917 * 2 1 4 4 C 1.53006 * 109.46900 * 240.00442 * 2 1 3 5 5 C 1.50696 * 109.47495 * 120.00074 * 2 1 3 6 6 N 1.30447 * 125.99027 * 237.25313 * 5 2 1 7 7 N 1.39928 * 108.89882 * 180.02562 * 6 5 2 8 8 H 0.97001 * 125.75730 * 179.97438 * 7 6 5 9 9 C 1.34264 * 108.49039 * 359.75617 * 7 6 5 10 10 C 1.38039 * 107.41803 * 0.38953 * 9 7 6 11 11 C 1.47429 * 126.41536 * 179.86805 * 10 9 7 12 12 O 1.21604 * 119.99721 * 184.54990 * 11 10 9 13 13 N 1.34771 * 119.99934 * 4.55535 * 11 10 9 14 14 C 1.47767 * 125.81820 * 179.70630 * 13 11 10 15 15 C 1.55966 * 104.11838 * 154.37326 * 14 13 11 16 16 H 1.08997 * 113.99051 * 161.09401 * 15 14 13 17 17 C 1.52909 * 106.47797 * 286.23608 * 15 14 13 18 18 C 1.51603 * 111.55329 * 168.38818 * 17 15 14 19 19 N 1.44329 * 113.11399 * 320.92988 * 18 17 15 20 20 C 1.36937 * 116.35450 * 187.25951 * 19 18 17 21 21 H 1.07996 * 120.00201 * 150.83872 * 20 19 18 22 22 C 1.38814 * 119.99740 * 330.82939 * 20 19 18 23 23 N 1.31616 * 120.00161 * 344.52050 * 22 20 19 24 24 Si 1.86802 * 119.99837 * 164.51628 * 22 20 19 25 25 H 1.48506 * 109.46940 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46964 * 120.00455 * 24 22 20 27 27 H 1.48499 * 109.47403 * 240.00548 * 24 22 20 28 28 C 1.43991 * 127.28963 * 7.22670 * 19 18 17 29 29 C 1.49950 * 116.09974 * 2.53390 * 28 19 18 30 30 H 1.08998 * 108.82829 * 141.04592 * 29 28 19 31 31 C 1.47617 * 125.82021 * 0.02562 * 13 11 10 32 32 H 1.08998 * 109.46869 * 319.46068 * 1 2 3 33 33 H 1.08995 * 109.47404 * 79.46535 * 1 2 3 34 34 H 1.09007 * 109.46589 * 199.46871 * 1 2 3 35 35 H 1.08999 * 109.47107 * 180.02562 * 3 2 1 36 36 H 1.09008 * 109.47120 * 300.00564 * 3 2 1 37 37 H 1.09004 * 109.46796 * 60.00380 * 3 2 1 38 38 H 1.08993 * 109.46745 * 305.47497 * 4 2 1 39 39 H 1.09002 * 109.47167 * 65.47411 * 4 2 1 40 40 H 1.08997 * 109.46766 * 185.46975 * 4 2 1 41 41 H 1.08005 * 126.29144 * 180.23978 * 9 7 6 42 42 H 1.08994 * 110.50410 * 273.03673 * 14 13 11 43 43 H 1.09000 * 110.49802 * 35.72004 * 14 13 11 44 44 H 1.09001 * 109.05993 * 47.86169 * 17 15 14 45 45 H 1.08990 * 109.01480 * 288.88997 * 17 15 14 46 46 H 1.08996 * 108.75696 * 199.98775 * 18 17 15 47 47 H 1.08997 * 108.75268 * 81.86062 * 18 17 15 48 48 H 0.96999 * 120.00120 * 179.97438 * 23 22 20 49 49 H 1.08998 * 108.16170 * 240.81201 * 28 19 18 50 50 H 1.09000 * 107.99780 * 124.12886 * 28 19 18 51 51 H 1.09000 * 110.08182 * 299.58814 * 31 13 11 52 52 H 1.08996 * 110.08227 * 61.09324 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0324 -0.7104 1.2304 6 7 2.8263 -0.2078 2.1353 7 7 3.0629 -1.1751 3.1183 8 1 3.6198 -1.0602 3.9042 9 6 2.3853 -2.2876 2.7928 10 6 1.7267 -2.0378 1.6057 11 6 0.8614 -2.9780 0.8703 12 8 0.4030 -2.6635 -0.2112 13 7 0.5784 -4.1859 1.3967 14 6 -0.2750 -5.2209 0.7770 15 6 0.2445 -6.5584 1.3883 16 1 -0.4588 -7.3869 1.3040 17 6 1.5881 -6.8485 0.7184 18 6 2.3314 -7.9667 1.4222 19 7 2.2051 -7.9145 2.8590 20 6 2.9728 -8.7983 3.5693 21 1 3.3053 -8.5458 4.5653 22 6 3.3237 -10.0190 3.0092 23 7 2.6874 -10.4622 1.9457 24 14 4.6990 -11.0325 3.7647 25 1 5.2494 -10.3183 4.9446 26 1 4.1656 -12.3518 4.1896 27 1 5.7747 -11.2335 2.7610 28 6 1.3627 -7.0368 3.6294 29 6 0.4815 -6.1115 2.8446 30 1 -0.4857 -6.0406 3.3421 31 6 1.0626 -4.6980 2.6938 32 1 -0.3633 0.7810 0.6679 33 1 -0.3634 0.1879 -1.0103 34 1 -0.3633 -0.9690 0.3425 35 1 3.1300 1.4426 -0.0005 36 1 1.6765 1.9564 -0.8900 37 1 1.6766 1.9563 0.8901 38 1 1.5988 -1.7165 -1.2997 39 1 1.7589 -0.1538 -2.1366 40 1 3.1255 -0.8068 -1.2017 41 1 2.3620 -3.2094 3.3551 42 1 -1.3206 -5.0615 1.0402 43 1 -0.1487 -5.2216 -0.3057 44 1 2.1990 -5.9460 0.7404 45 1 1.4134 -7.1347 -0.3186 46 1 3.3877 -7.9043 1.1608 47 1 1.9418 -8.9221 1.0708 48 1 2.9328 -11.3150 1.5541 49 1 2.0010 -6.4325 4.2739 50 1 0.7271 -7.6527 4.2656 51 1 2.1518 -4.7389 2.6969 52 1 0.7101 -4.0592 3.5035 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088166763.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:58 Heat of formation + Delta-G solvation = 74.256930 kcal Electronic energy + Delta-G solvation = -32366.856426 eV Core-core repulsion = 28368.948331 eV Total energy + Delta-G solvation = -3997.908096 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.74303 -40.07889 -38.22169 -36.73125 -35.53575 -32.71580 -31.72783 -31.11708 -30.70390 -29.98148 -27.80711 -27.09984 -27.08287 -25.76787 -24.02661 -22.88818 -22.59907 -21.74579 -21.24294 -20.07978 -18.28793 -18.06480 -17.34263 -17.13494 -16.43082 -15.95797 -15.29135 -15.09568 -15.00831 -14.93754 -14.41393 -14.25798 -13.90953 -13.78881 -13.62563 -13.35725 -13.07528 -12.85591 -12.66127 -12.45944 -12.31647 -12.11770 -11.98107 -11.77056 -11.45573 -11.34128 -11.24193 -11.14046 -11.05173 -10.97070 -10.81746 -10.56726 -10.46462 -10.25699 -10.24805 -9.76939 -9.70674 -9.64057 -9.55961 -9.47573 -8.91697 -8.60185 -8.40837 -6.65469 -5.58681 -3.35926 1.41489 2.09152 2.53787 3.13348 3.33378 3.41376 3.42927 3.46626 4.26180 4.43226 4.48186 4.66272 4.70776 4.86527 5.00930 5.05336 5.09147 5.24786 5.33034 5.35996 5.37319 5.39781 5.52764 5.53154 5.62793 5.68207 5.74145 5.83658 5.86664 5.93384 5.95443 5.99043 6.02987 6.08679 6.12930 6.15523 6.27886 6.30582 6.40716 6.50933 6.54770 6.60404 6.64068 6.69002 6.76483 6.82146 6.95161 7.35382 7.42196 7.68037 7.76269 8.00269 8.37757 8.53900 9.28036 9.95975 10.24087 11.21469 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018272 B = 0.002850 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.052972 B = 9821.146654 C =10397.756092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.019 3.981 3 C -0.136 4.136 4 C -0.151 4.151 5 C 0.148 3.852 6 N -0.299 5.299 7 N -0.465 5.465 8 H 0.443 0.557 9 C 0.095 3.905 10 C -0.281 4.281 11 C 0.605 3.395 12 O -0.534 6.534 13 N -0.610 5.610 14 C 0.110 3.890 15 C -0.082 4.082 16 H 0.101 0.899 17 C -0.121 4.121 18 C 0.153 3.847 19 N -0.588 5.588 20 C -0.265 4.265 21 H 0.065 0.935 22 C 0.005 3.995 23 N -0.896 5.896 24 Si 0.904 3.096 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.177 3.823 29 C -0.099 4.099 30 H 0.074 0.926 31 C 0.102 3.898 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.098 0.902 39 H 0.056 0.944 40 H 0.043 0.957 41 H 0.196 0.804 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.046 0.954 45 H 0.056 0.944 46 H 0.015 0.985 47 H 0.092 0.908 48 H 0.252 0.748 49 H 0.011 0.989 50 H 0.024 0.976 51 H 0.074 0.926 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.315 18.024 -0.245 18.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.017 3.983 3 C -0.194 4.194 4 C -0.209 4.209 5 C -0.021 4.021 6 N -0.120 5.120 7 N -0.169 5.169 8 H 0.288 0.712 9 C -0.057 4.057 10 C -0.296 4.296 11 C 0.396 3.604 12 O -0.414 6.414 13 N -0.344 5.344 14 C -0.012 4.012 15 C -0.102 4.102 16 H 0.120 0.880 17 C -0.160 4.160 18 C 0.029 3.971 19 N -0.313 5.313 20 C -0.395 4.395 21 H 0.082 0.918 22 C -0.194 4.194 23 N -0.540 5.540 24 Si 0.734 3.266 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.216 1.216 28 C 0.051 3.949 29 C -0.119 4.119 30 H 0.092 0.908 31 C -0.021 4.021 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.116 0.884 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.212 0.788 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.033 0.967 47 H 0.109 0.891 48 H 0.063 0.937 49 H 0.028 0.972 50 H 0.042 0.958 51 H 0.092 0.908 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.879 19.215 -0.597 19.612 hybrid contribution 0.831 -1.308 0.863 1.774 sum -3.049 17.907 0.266 18.166 Atomic orbital electron populations 1.22009 0.92706 1.03288 1.01781 1.18978 0.96175 0.93838 0.89351 1.21844 1.01286 0.94686 1.01563 1.22148 1.00289 1.03721 0.94754 1.22420 0.93083 0.91516 0.95100 1.77121 1.21443 1.13096 1.00346 1.46165 1.39104 1.09694 1.21905 0.71238 1.24022 0.92576 0.92734 0.96386 1.20187 1.12257 0.97155 1.00010 1.16811 0.79682 0.79439 0.84462 1.90618 1.54213 1.75467 1.21089 1.48469 1.49871 1.14928 1.21084 1.22632 0.93352 0.86533 0.98682 1.22256 0.98522 0.95455 0.93927 0.88043 1.21629 0.95118 1.00115 0.99096 1.20434 0.96502 0.97815 0.82383 1.42668 1.47044 1.39727 1.01826 1.19196 1.24675 0.95289 1.00338 0.91774 1.25112 0.99640 0.96410 0.98206 1.69834 1.40839 1.19640 1.23729 0.86201 0.81819 0.80014 0.78596 1.20304 1.21678 1.21568 1.19322 0.91656 0.91370 0.92592 1.21519 0.99772 0.93176 0.97398 0.90763 1.22443 0.99365 0.95273 0.85004 0.93813 0.92130 0.89961 0.92477 0.92372 0.92604 0.88376 0.92527 0.93738 0.78761 0.91803 0.90220 0.93533 0.92553 0.96730 0.89056 0.93707 0.97186 0.95810 0.90765 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.19 37.16 0.30 -1.39 16 2 C 0.02 0.23 0.75 -155.66 -0.12 0.12 16 3 C -0.14 -1.45 7.87 37.16 0.29 -1.16 16 4 C -0.15 -1.92 8.18 37.16 0.30 -1.61 16 5 C 0.15 1.98 5.64 -82.02 -0.46 1.52 16 6 N -0.30 -3.83 11.93 33.89 0.40 -3.42 16 7 N -0.46 -4.66 7.29 30.85 0.22 -4.44 16 8 H 0.44 2.84 8.96 -182.73 -1.64 1.20 16 9 C 0.10 1.03 10.53 -16.56 -0.17 0.85 16 10 C -0.28 -3.78 5.83 -105.07 -0.61 -4.39 16 11 C 0.61 8.90 7.26 -12.52 -0.09 8.80 16 12 O -0.53 -8.65 10.69 5.27 0.06 -8.59 16 13 N -0.61 -8.39 2.81 -170.82 -0.48 -8.87 16 14 C 0.11 1.50 6.23 -1.76 -0.01 1.49 16 15 C -0.08 -1.26 3.78 -88.47 -0.33 -1.60 16 16 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 17 C -0.12 -2.18 4.97 -27.49 -0.14 -2.32 16 18 C 0.15 3.51 5.07 -5.91 -0.03 3.48 16 19 N -0.59 -13.72 3.23 -179.59 -0.58 -14.30 16 20 C -0.26 -6.93 9.31 -15.06 -0.14 -7.07 16 21 H 0.06 1.65 7.88 -52.49 -0.41 1.24 16 22 C 0.01 0.14 5.12 -17.43 -0.09 0.05 16 23 N -0.90 -24.88 10.51 55.49 0.58 -24.30 16 24 Si 0.90 21.07 29.58 -169.99 -5.03 16.04 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 28 C 0.18 3.31 5.67 -6.89 -0.04 3.27 16 29 C -0.10 -1.45 2.69 -91.23 -0.24 -1.70 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 C 0.10 1.28 3.66 -3.13 -0.01 1.27 16 32 H 0.04 0.48 7.98 -51.93 -0.41 0.07 16 33 H 0.06 0.68 7.99 -51.93 -0.41 0.26 16 34 H 0.08 1.16 4.74 -51.93 -0.25 0.91 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 37 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 38 H 0.10 1.45 4.81 -51.93 -0.25 1.20 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.20 1.72 4.46 -52.48 -0.23 1.48 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.08 1.14 7.92 -51.93 -0.41 0.73 16 44 H 0.05 0.84 6.77 -51.93 -0.35 0.49 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.01 0.37 8.12 -51.93 -0.42 -0.05 16 47 H 0.09 2.39 5.57 -51.93 -0.29 2.10 16 48 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 49 H 0.01 0.19 7.78 -51.93 -0.40 -0.22 16 50 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.07 0.99 6.36 -51.93 -0.33 0.65 16 52 H 0.07 0.69 7.24 -51.93 -0.38 0.31 16 LS Contribution 384.41 15.07 5.79 5.79 Total: -1.00 -30.72 384.41 -10.18 -40.90 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -9.56 Total: 1.56 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -1.59 Total: -0.37 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 0.15 Total: -55.33 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.06 Total: -8.59 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.72 -10.18 -40.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088166763.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.153 kcal (2) G-P(sol) polarization free energy of solvation -30.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds