Wall clock time and date at job start Wed Apr 1 2020 04:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47479 * 2 1 4 4 C 1.50696 * 109.47181 * 119.99929 * 2 1 3 5 5 N 1.30451 * 125.99246 * 300.17310 * 4 2 1 6 6 N 1.39929 * 108.90102 * 180.26213 * 5 4 2 7 7 C 1.46501 * 125.75262 * 179.73245 * 6 5 4 8 8 C 1.34253 * 108.49113 * 359.73302 * 6 5 4 9 9 C 1.38047 * 107.42007 * 0.02562 * 8 6 5 10 10 C 1.47428 * 126.41688 * 179.97438 * 9 8 6 11 11 O 1.21600 * 120.00200 * 209.87653 * 10 9 8 12 12 N 1.34780 * 119.99732 * 29.88185 * 10 9 8 13 13 C 1.47383 * 125.73831 * 175.36293 * 12 10 9 14 14 C 1.55410 * 106.73892 * 179.06554 * 13 12 10 15 15 H 1.08994 * 112.76263 * 147.12179 * 14 13 12 16 16 C 1.52906 * 106.57320 * 271.00222 * 14 13 12 17 17 C 1.51572 * 111.66697 * 169.88240 * 16 14 13 18 18 N 1.44345 * 113.01652 * 320.12422 * 17 16 14 19 19 C 1.36929 * 116.42597 * 188.02492 * 18 17 16 20 20 H 1.08004 * 120.00396 * 150.99254 * 19 18 17 21 21 C 1.38818 * 119.99982 * 330.99137 * 19 18 17 22 22 N 1.31619 * 119.99984 * 334.71939 * 21 19 18 23 23 Si 1.86801 * 119.99930 * 154.71827 * 21 19 18 24 24 H 1.48497 * 109.47121 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47327 * 120.00179 * 23 21 19 26 26 H 1.48502 * 109.46753 * 239.99988 * 23 21 19 27 27 C 1.43982 * 127.14762 * 8.05155 * 18 17 16 28 28 C 1.49776 * 116.30033 * 2.82338 * 27 18 17 29 29 H 1.08997 * 108.73754 * 141.04803 * 28 27 18 30 30 C 1.47931 * 125.74287 * 355.36434 * 12 10 9 31 31 H 1.09003 * 109.46917 * 300.00271 * 1 2 3 32 32 H 1.09003 * 109.46737 * 60.00287 * 1 2 3 33 33 H 1.08996 * 109.47437 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46917 * 239.99729 * 2 1 3 35 35 H 1.08995 * 109.47105 * 180.02562 * 3 2 1 36 36 H 1.09007 * 109.46813 * 300.00135 * 3 2 1 37 37 H 1.08997 * 109.46829 * 59.99877 * 3 2 1 38 38 H 1.09000 * 109.47304 * 269.99864 * 7 6 5 39 39 H 1.09002 * 109.47462 * 30.00306 * 7 6 5 40 40 H 1.09004 * 109.46534 * 149.99686 * 7 6 5 41 41 H 1.08003 * 126.29074 * 179.97438 * 8 6 5 42 42 H 1.09001 * 110.00664 * 298.38859 * 13 12 10 43 43 H 1.08998 * 110.00713 * 59.74858 * 13 12 10 44 44 H 1.08998 * 109.03985 * 290.45245 * 16 14 13 45 45 H 1.09003 * 109.03881 * 49.39297 * 16 14 13 46 46 H 1.09002 * 108.77210 * 81.03875 * 17 16 14 47 47 H 1.08999 * 108.77407 * 199.32770 * 17 16 14 48 48 H 0.97001 * 119.99665 * 180.02562 * 22 21 19 49 49 H 1.08998 * 108.11309 * 124.62155 * 27 18 17 50 50 H 1.09002 * 108.11056 * 241.28677 * 27 18 17 51 51 H 1.09004 * 110.56330 * 274.13066 * 30 12 10 52 52 H 1.08998 * 110.56791 * 36.99338 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7877 -0.3699 2.4658 6 7 2.4334 -1.2704 3.3204 7 6 2.4094 -1.2280 4.7846 8 6 3.0785 -2.1795 2.5723 9 6 2.8484 -1.8636 1.2483 10 6 3.3625 -2.5903 0.0731 11 8 3.5776 -1.9937 -0.9645 12 7 3.5941 -3.9159 0.1487 13 6 4.0132 -4.7816 -0.9681 14 6 4.1742 -6.2143 -0.3877 15 1 3.9193 -6.9920 -1.1076 16 6 5.6169 -6.3251 0.1063 17 6 5.8355 -7.5872 0.9167 18 7 4.7291 -7.8952 1.7911 19 6 4.9203 -8.9212 2.6775 20 1 4.3987 -8.9221 3.6233 21 6 5.7844 -9.9604 2.3606 22 7 6.0299 -10.2511 1.1007 23 14 6.5989 -10.9460 3.7225 24 1 6.1613 -10.4231 5.0417 25 1 6.2092 -12.3738 3.6013 26 1 8.0745 -10.8242 3.6070 27 6 3.4464 -7.2426 1.8332 28 6 3.2164 -6.1651 0.8186 29 1 2.1884 -6.2328 0.4629 30 6 3.4703 -4.7467 1.3664 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 3.1301 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6768 1.9563 0.8900 38 1 3.2402 -0.6209 5.1442 39 1 1.4686 -0.7917 5.1202 40 1 2.5015 -2.2401 5.1788 41 1 3.6697 -3.0057 2.9390 42 1 3.2520 -4.7786 -1.7482 43 1 4.9638 -4.4343 -1.3727 44 1 6.2874 -6.3336 -0.7530 45 1 5.8473 -5.4601 0.7282 46 1 5.9847 -8.4222 0.2321 47 1 6.7345 -7.4649 1.5209 48 1 6.6335 -10.9775 0.8793 49 1 2.6754 -8.0019 1.7024 50 1 3.3220 -6.8036 2.8231 51 1 4.3941 -4.7191 1.9442 52 1 2.6279 -4.4140 1.9729 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088198784.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:43 Heat of formation + Delta-G solvation = 64.949778 kcal Electronic energy + Delta-G solvation = -31740.351427 eV Core-core repulsion = 27742.039743 eV Total energy + Delta-G solvation = -3998.311684 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 3.31 seconds Orbital eigenvalues (eV) -41.65461 -40.04653 -38.10578 -36.01808 -35.50311 -32.90439 -32.45541 -31.64253 -30.67256 -30.00860 -27.85409 -27.22669 -27.14872 -25.61144 -23.94836 -22.70827 -22.52099 -21.80106 -21.28919 -19.84923 -18.93157 -17.78525 -17.17489 -17.09844 -16.26566 -15.94207 -15.57244 -15.21172 -14.92919 -14.86847 -14.49205 -14.29253 -13.93806 -13.72530 -13.59305 -13.49279 -13.20115 -13.05120 -12.97503 -12.77091 -12.62507 -12.28085 -12.26881 -12.17437 -11.79825 -11.57168 -11.29528 -11.25241 -11.15054 -11.09585 -10.80936 -10.80245 -10.49771 -10.28102 -10.24924 -9.91507 -9.72776 -9.61127 -9.59001 -9.49366 -8.79600 -8.51115 -8.43342 -6.63384 -5.68079 -3.33011 1.43172 2.10389 2.16452 3.09903 3.33797 3.37506 3.42961 3.44992 4.13942 4.42886 4.45571 4.62747 4.67361 4.75390 4.82119 4.87353 5.06068 5.08475 5.09412 5.12425 5.28895 5.29395 5.38192 5.40922 5.46862 5.52066 5.54610 5.56157 5.64457 5.74094 5.80310 5.86774 5.90334 5.92496 6.05730 6.14484 6.15219 6.16220 6.24625 6.38633 6.42910 6.50871 6.57495 6.62810 6.66024 6.76440 6.84292 7.24919 7.45192 7.67565 7.77543 7.87736 8.34062 8.49423 9.24732 9.94217 10.25193 11.18739 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017539 B = 0.002728 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.040101 B =10262.931823 C =11308.306989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.024 4.024 3 C -0.137 4.137 4 C 0.137 3.863 5 N -0.297 5.297 6 N -0.364 5.364 7 C 0.097 3.903 8 C 0.097 3.903 9 C -0.280 4.280 10 C 0.608 3.392 11 O -0.546 6.546 12 N -0.613 5.613 13 C 0.112 3.888 14 C -0.081 4.081 15 H 0.099 0.901 16 C -0.122 4.122 17 C 0.156 3.844 18 N -0.585 5.585 19 C -0.271 4.271 20 H 0.064 0.936 21 C 0.009 3.991 22 N -0.885 5.885 23 Si 0.896 3.104 24 H -0.277 1.277 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.177 3.823 28 C -0.098 4.098 29 H 0.074 0.926 30 C 0.104 3.896 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.106 0.894 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.186 0.814 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.047 0.953 46 H 0.077 0.923 47 H 0.018 0.982 48 H 0.253 0.747 49 H 0.024 0.976 50 H 0.012 0.988 51 H 0.074 0.926 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.118 18.208 1.855 20.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.044 4.044 3 C -0.195 4.195 4 C -0.031 4.031 5 N -0.118 5.118 6 N -0.142 5.142 7 C -0.044 4.044 8 C -0.054 4.054 9 C -0.295 4.295 10 C 0.398 3.602 11 O -0.425 6.425 12 N -0.346 5.346 13 C -0.011 4.011 14 C -0.100 4.100 15 H 0.117 0.883 16 C -0.160 4.160 17 C 0.031 3.969 18 N -0.309 5.309 19 C -0.401 4.401 20 H 0.082 0.918 21 C -0.192 4.192 22 N -0.528 5.528 23 Si 0.725 3.275 24 H -0.202 1.202 25 H -0.218 1.218 26 H -0.215 1.215 27 C 0.050 3.950 28 C -0.118 4.118 29 H 0.092 0.908 30 C -0.019 4.019 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.124 0.876 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.203 0.797 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.066 0.934 46 H 0.094 0.906 47 H 0.036 0.964 48 H 0.063 0.937 49 H 0.042 0.958 50 H 0.030 0.970 51 H 0.092 0.908 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.528 19.396 2.146 21.296 hybrid contribution 1.049 -1.358 0.484 1.783 sum -7.478 18.038 2.630 19.703 Atomic orbital electron populations 1.21809 0.93959 1.01994 1.02113 1.19816 0.95718 0.95891 0.93003 1.21748 1.01367 0.94491 1.01892 1.22296 0.94596 0.92780 0.93400 1.77095 1.20296 1.14382 1.00016 1.48300 1.37620 1.21184 1.07061 1.21994 1.04583 1.04344 0.73468 1.23361 0.96419 0.94696 0.90936 1.20153 1.13548 1.03209 0.92559 1.16876 0.76918 0.79755 0.86698 1.90726 1.53396 1.66879 1.31510 1.48527 1.67607 1.06674 1.11817 1.22395 0.99915 0.89814 0.88930 1.22072 0.96650 0.94480 0.96780 0.88258 1.21663 0.94551 1.00057 0.99705 1.20202 0.88682 0.94498 0.93511 1.42676 1.08628 1.37031 1.42573 1.19111 1.25661 0.99369 0.95959 0.91782 1.25000 1.02072 0.96514 0.95588 1.70029 1.37443 1.29461 1.15911 0.86341 0.79429 0.79558 0.82136 1.20217 1.21778 1.21517 1.19264 0.89143 0.92205 0.94367 1.21595 0.99692 0.93705 0.96784 0.90754 1.22632 1.01126 0.90478 0.87635 0.92257 0.91969 0.92722 0.87628 0.92503 0.92034 0.92428 0.90318 0.88917 0.88868 0.79738 0.91837 0.91263 0.92302 0.93405 0.90553 0.96373 0.93692 0.95777 0.97045 0.90761 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.18 37.16 0.34 -1.08 16 2 C -0.02 -0.29 3.24 -91.77 -0.30 -0.58 16 3 C -0.14 -1.44 9.18 37.16 0.34 -1.10 16 4 C 0.14 1.85 5.76 -82.02 -0.47 1.38 16 5 N -0.30 -3.83 12.50 33.90 0.42 -3.41 16 6 N -0.36 -3.90 3.98 -67.60 -0.27 -4.17 16 7 C 0.10 0.59 11.44 59.85 0.68 1.28 16 8 C 0.10 1.10 9.53 -16.56 -0.16 0.94 16 9 C -0.28 -3.89 5.78 -105.06 -0.61 -4.50 16 10 C 0.61 9.56 7.69 -12.52 -0.10 9.46 16 11 O -0.55 -9.96 15.56 5.28 0.08 -9.88 16 12 N -0.61 -8.96 3.34 -170.87 -0.57 -9.53 16 13 C 0.11 1.63 6.25 -2.28 -0.01 1.62 16 14 C -0.08 -1.28 3.65 -88.81 -0.32 -1.60 16 15 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 16 C -0.12 -2.14 4.78 -27.50 -0.13 -2.27 16 17 C 0.16 3.51 5.17 -5.91 -0.03 3.48 16 18 N -0.58 -13.70 3.22 -179.70 -0.58 -14.28 16 19 C -0.27 -7.13 9.23 -15.06 -0.14 -7.26 16 20 H 0.06 1.67 7.95 -52.48 -0.42 1.25 16 21 C 0.01 0.23 4.93 -17.43 -0.09 0.14 16 22 N -0.89 -24.72 11.04 55.49 0.61 -24.11 16 23 Si 0.90 20.97 29.62 -169.99 -5.04 15.94 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 C 0.18 3.40 5.76 -6.98 -0.04 3.36 16 28 C -0.10 -1.53 2.82 -91.03 -0.26 -1.78 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 C 0.10 1.40 4.03 -2.65 -0.01 1.39 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.11 1.45 6.20 -51.93 -0.32 1.12 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.19 1.71 6.13 -52.48 -0.32 1.38 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 1.03 7.79 -51.93 -0.40 0.63 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.05 0.81 6.62 -51.93 -0.34 0.47 16 46 H 0.08 1.98 5.83 -51.93 -0.30 1.68 16 47 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 48 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 49 H 0.02 0.50 8.13 -51.93 -0.42 0.08 16 50 H 0.01 0.22 7.80 -51.93 -0.40 -0.19 16 51 H 0.07 1.03 6.80 -51.93 -0.35 0.67 16 52 H 0.07 0.88 6.36 -51.93 -0.33 0.55 16 LS Contribution 400.87 15.07 6.04 6.04 Total: -1.00 -32.15 400.87 -9.27 -41.42 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -8.67 Total: -0.89 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -1.30 Total: 2.87 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.38 Total: -55.50 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.08 Total: -9.88 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.04 Total: 15.94 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.15 -9.27 -41.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088198784.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.367 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.32 seconds