Wall clock time and date at job start Wed Apr 1 2020 04:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47479 * 2 1 4 4 C 1.50696 * 109.47181 * 119.99929 * 2 1 3 5 5 N 1.30451 * 125.99246 * 300.17310 * 4 2 1 6 6 N 1.39929 * 108.90102 * 180.26213 * 5 4 2 7 7 C 1.46501 * 125.75262 * 179.73245 * 6 5 4 8 8 C 1.34253 * 108.49113 * 359.73302 * 6 5 4 9 9 C 1.38047 * 107.42007 * 0.02562 * 8 6 5 10 10 C 1.47428 * 126.41688 * 179.97438 * 9 8 6 11 11 O 1.21600 * 120.00200 * 209.87653 * 10 9 8 12 12 N 1.34780 * 119.99732 * 29.88185 * 10 9 8 13 13 C 1.47383 * 125.73831 * 175.36293 * 12 10 9 14 14 C 1.55410 * 106.73892 * 179.06554 * 13 12 10 15 15 H 1.08994 * 112.76263 * 147.12179 * 14 13 12 16 16 C 1.52906 * 106.57320 * 271.00222 * 14 13 12 17 17 C 1.51572 * 111.66697 * 169.88240 * 16 14 13 18 18 N 1.44345 * 113.01652 * 320.12422 * 17 16 14 19 19 C 1.36929 * 116.42597 * 188.02492 * 18 17 16 20 20 H 1.08004 * 120.00396 * 150.99254 * 19 18 17 21 21 C 1.38818 * 119.99982 * 330.99137 * 19 18 17 22 22 N 1.31619 * 119.99984 * 334.71939 * 21 19 18 23 23 Si 1.86801 * 119.99930 * 154.71827 * 21 19 18 24 24 H 1.48497 * 109.47121 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47327 * 120.00179 * 23 21 19 26 26 H 1.48502 * 109.46753 * 239.99988 * 23 21 19 27 27 C 1.43982 * 127.14762 * 8.05155 * 18 17 16 28 28 C 1.49776 * 116.30033 * 2.82338 * 27 18 17 29 29 H 1.08997 * 108.73754 * 141.04803 * 28 27 18 30 30 C 1.47931 * 125.74287 * 355.36434 * 12 10 9 31 31 H 1.09003 * 109.46917 * 300.00271 * 1 2 3 32 32 H 1.09003 * 109.46737 * 60.00287 * 1 2 3 33 33 H 1.08996 * 109.47437 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46917 * 239.99729 * 2 1 3 35 35 H 1.08995 * 109.47105 * 180.02562 * 3 2 1 36 36 H 1.09007 * 109.46813 * 300.00135 * 3 2 1 37 37 H 1.08997 * 109.46829 * 59.99877 * 3 2 1 38 38 H 1.09000 * 109.47304 * 269.99864 * 7 6 5 39 39 H 1.09002 * 109.47462 * 30.00306 * 7 6 5 40 40 H 1.09004 * 109.46534 * 149.99686 * 7 6 5 41 41 H 1.08003 * 126.29074 * 179.97438 * 8 6 5 42 42 H 1.09001 * 110.00664 * 298.38859 * 13 12 10 43 43 H 1.08998 * 110.00713 * 59.74858 * 13 12 10 44 44 H 1.08998 * 109.03985 * 290.45245 * 16 14 13 45 45 H 1.09003 * 109.03881 * 49.39297 * 16 14 13 46 46 H 1.09002 * 108.77210 * 81.03875 * 17 16 14 47 47 H 1.08999 * 108.77407 * 199.32770 * 17 16 14 48 48 H 0.97001 * 119.99665 * 180.02562 * 22 21 19 49 49 H 1.08998 * 108.11309 * 124.62155 * 27 18 17 50 50 H 1.09002 * 108.11056 * 241.28677 * 27 18 17 51 51 H 1.09004 * 110.56330 * 274.13066 * 30 12 10 52 52 H 1.08998 * 110.56791 * 36.99338 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7877 -0.3699 2.4658 6 7 2.4334 -1.2704 3.3204 7 6 2.4094 -1.2280 4.7846 8 6 3.0785 -2.1795 2.5723 9 6 2.8484 -1.8636 1.2483 10 6 3.3625 -2.5903 0.0731 11 8 3.5776 -1.9937 -0.9645 12 7 3.5941 -3.9159 0.1487 13 6 4.0132 -4.7816 -0.9681 14 6 4.1742 -6.2143 -0.3877 15 1 3.9193 -6.9920 -1.1076 16 6 5.6169 -6.3251 0.1063 17 6 5.8355 -7.5872 0.9167 18 7 4.7291 -7.8952 1.7911 19 6 4.9203 -8.9212 2.6775 20 1 4.3987 -8.9221 3.6233 21 6 5.7844 -9.9604 2.3606 22 7 6.0299 -10.2511 1.1007 23 14 6.5989 -10.9460 3.7225 24 1 6.1613 -10.4231 5.0417 25 1 6.2092 -12.3738 3.6013 26 1 8.0745 -10.8242 3.6070 27 6 3.4464 -7.2426 1.8332 28 6 3.2164 -6.1651 0.8186 29 1 2.1884 -6.2328 0.4629 30 6 3.4703 -4.7467 1.3664 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 3.1301 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6768 1.9563 0.8900 38 1 3.2402 -0.6209 5.1442 39 1 1.4686 -0.7917 5.1202 40 1 2.5015 -2.2401 5.1788 41 1 3.6697 -3.0057 2.9390 42 1 3.2520 -4.7786 -1.7482 43 1 4.9638 -4.4343 -1.3727 44 1 6.2874 -6.3336 -0.7530 45 1 5.8473 -5.4601 0.7282 46 1 5.9847 -8.4222 0.2321 47 1 6.7345 -7.4649 1.5209 48 1 6.6335 -10.9775 0.8793 49 1 2.6754 -8.0019 1.7024 50 1 3.3220 -6.8036 2.8231 51 1 4.3941 -4.7191 1.9442 52 1 2.6279 -4.4140 1.9729 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088198784.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:36 Heat of formation + Delta-G solvation = 46.193129 kcal Electronic energy + Delta-G solvation = -31741.164777 eV Core-core repulsion = 27742.039743 eV Total energy + Delta-G solvation = -3999.125034 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 3.78 seconds Orbital eigenvalues (eV) -42.58234 -41.29017 -39.42085 -37.29932 -36.68168 -34.31007 -33.44431 -33.10929 -32.09756 -31.28033 -29.16310 -28.03162 -27.93255 -27.12097 -25.44640 -23.97650 -23.65298 -23.12222 -22.45146 -20.89297 -19.90967 -19.29633 -18.83715 -18.13446 -17.38944 -17.03689 -16.84744 -16.48983 -16.23764 -15.83699 -15.68671 -15.58717 -15.41566 -15.19093 -14.77189 -14.63860 -14.34941 -14.22575 -14.04447 -13.66588 -13.63167 -13.47157 -13.33717 -13.30446 -12.97078 -12.91006 -12.83242 -12.52480 -12.43068 -12.16448 -12.12012 -12.01801 -11.97033 -11.83894 -11.65588 -11.47789 -11.25328 -11.17734 -10.86262 -10.49323 -10.36344 -9.81525 -9.52440 -8.60248 -7.66790 -5.36931 0.52936 1.10775 1.42233 1.46799 1.50821 1.60123 1.97272 2.27541 2.53887 3.24825 3.27737 3.45583 3.53505 3.60538 3.78482 3.84118 3.93800 4.02680 4.15795 4.16834 4.24561 4.33168 4.39222 4.43312 4.49758 4.52224 4.56795 4.61272 4.65979 4.68855 4.71091 4.78704 4.79053 4.93719 4.94225 4.95138 5.04846 5.06720 5.09889 5.10617 5.24615 5.29012 5.33247 5.34637 5.36888 5.45601 5.52812 5.73776 5.88186 5.97387 6.47026 6.48333 6.59388 7.17629 7.25660 8.08881 8.28546 9.15135 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017539 B = 0.002728 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.040101 B =10262.931823 C =11308.306989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.028 4.028 3 C -0.130 4.130 4 C 0.125 3.875 5 N -0.313 5.313 6 N -0.358 5.358 7 C 0.086 3.914 8 C 0.111 3.889 9 C -0.311 4.311 10 C 0.608 3.392 11 O -0.580 6.580 12 N -0.612 5.612 13 C 0.119 3.881 14 C -0.077 4.077 15 H 0.094 0.906 16 C -0.110 4.110 17 C 0.165 3.835 18 N -0.596 5.596 19 C -0.280 4.280 20 H 0.065 0.935 21 C -0.042 4.042 22 N -0.916 5.916 23 Si 0.955 3.045 24 H -0.266 1.266 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.175 3.825 28 C -0.094 4.094 29 H 0.089 0.911 30 C 0.114 3.886 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.046 0.954 34 H 0.085 0.915 35 H 0.042 0.958 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.118 0.882 41 H 0.209 0.791 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.057 0.943 46 H 0.042 0.958 47 H -0.007 1.007 48 H 0.249 0.751 49 H 0.009 0.991 50 H 0.028 0.972 51 H 0.077 0.923 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.057 19.565 3.515 21.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.048 4.048 3 C -0.188 4.188 4 C -0.042 4.042 5 N -0.134 5.134 6 N -0.135 5.135 7 C -0.053 4.053 8 C -0.042 4.042 9 C -0.326 4.326 10 C 0.399 3.601 11 O -0.461 6.461 12 N -0.344 5.344 13 C -0.003 4.003 14 C -0.096 4.096 15 H 0.112 0.888 16 C -0.148 4.148 17 C 0.039 3.961 18 N -0.320 5.320 19 C -0.411 4.411 20 H 0.083 0.917 21 C -0.240 4.240 22 N -0.560 5.560 23 Si 0.784 3.216 24 H -0.190 1.190 25 H -0.221 1.221 26 H -0.219 1.219 27 C 0.050 3.950 28 C -0.114 4.114 29 H 0.108 0.892 30 C -0.008 4.008 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.061 0.939 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.137 0.863 41 H 0.226 0.774 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.059 0.941 47 H 0.011 0.989 48 H 0.058 0.942 49 H 0.027 0.973 50 H 0.046 0.954 51 H 0.095 0.905 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.498 20.771 3.849 23.162 hybrid contribution 1.318 -1.782 0.047 2.217 sum -8.180 18.990 3.896 21.040 Atomic orbital electron populations 1.21749 0.92599 1.01755 1.02997 1.19832 0.96844 0.96252 0.91875 1.21696 1.00393 0.93873 1.02866 1.22505 0.94772 0.92905 0.93989 1.77050 1.21045 1.15265 1.00028 1.48700 1.36229 1.20102 1.08466 1.22417 1.05666 1.06451 0.70798 1.23619 0.95608 0.94875 0.90117 1.20137 1.15321 1.04130 0.92984 1.17134 0.76349 0.79790 0.86838 1.90704 1.54895 1.67545 1.32941 1.48515 1.67321 1.06532 1.12064 1.22264 1.00165 0.88723 0.89134 1.21983 0.95425 0.95239 0.96967 0.88805 1.21511 0.96203 0.97627 0.99430 1.19947 0.87824 0.95613 0.92696 1.42911 1.10294 1.36653 1.42110 1.19431 1.25346 0.99762 0.96565 0.91734 1.25702 1.02981 0.97940 0.97331 1.70181 1.38188 1.30144 1.17525 0.85406 0.78018 0.77972 0.80234 1.18998 1.22071 1.21938 1.19345 0.86617 0.92656 0.96386 1.21492 1.00394 0.93771 0.95722 0.89225 1.22589 1.02203 0.88758 0.87281 0.92111 0.90277 0.93489 0.89717 0.93911 0.90291 0.92155 0.88888 0.88153 0.86321 0.77449 0.91138 0.91460 0.91319 0.92417 0.94091 0.98936 0.94165 0.97342 0.95379 0.90533 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 9.18 71.98 0.66 -1.89 16 2 C -0.03 -0.65 3.24 -11.54 -0.04 -0.69 16 3 C -0.13 -2.64 9.18 71.98 0.66 -1.98 16 4 C 0.13 3.26 5.76 43.51 0.25 3.51 16 5 N -0.31 -7.52 12.50 -46.68 -0.58 -8.10 16 6 N -0.36 -6.68 3.98 -367.77 -1.46 -8.14 16 7 C 0.09 0.75 11.44 127.77 1.46 2.21 16 8 C 0.11 2.20 9.53 84.28 0.80 3.00 16 9 C -0.31 -8.17 5.78 -20.15 -0.12 -8.29 16 10 C 0.61 18.43 7.69 86.66 0.67 19.09 16 11 O -0.58 -21.06 15.56 -4.03 -0.06 -21.13 16 12 N -0.61 -16.70 3.34 -812.75 -2.72 -19.41 16 13 C 0.12 3.30 6.25 87.04 0.54 3.85 16 14 C -0.08 -2.34 3.65 -9.62 -0.04 -2.37 16 15 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 16 C -0.11 -3.77 4.78 30.09 0.14 -3.63 16 17 C 0.16 7.51 5.17 86.31 0.45 7.95 16 18 N -0.60 -27.80 3.22 -722.44 -2.33 -30.13 16 19 C -0.28 -14.73 9.23 84.04 0.78 -13.95 16 20 H 0.06 3.32 7.95 -2.91 -0.02 3.30 16 21 C -0.04 -2.28 4.93 84.86 0.42 -1.86 16 22 N -0.92 -52.37 11.04 21.65 0.24 -52.13 16 23 Si 0.96 43.41 29.62 68.60 2.03 45.44 16 24 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 25 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 26 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 27 C 0.18 6.51 5.76 85.81 0.49 7.00 16 28 C -0.09 -2.73 2.82 -11.06 -0.03 -2.77 16 29 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 30 C 0.11 2.74 4.03 86.50 0.35 3.09 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 2.35 6.20 -2.39 -0.01 2.34 16 35 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.12 0.47 8.14 -2.38 -0.02 0.45 16 41 H 0.21 3.02 6.13 -2.91 -0.02 3.01 16 42 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.07 1.91 7.79 -2.39 -0.02 1.89 16 44 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.06 1.87 6.62 -2.39 -0.02 1.86 16 46 H 0.04 2.21 5.83 -2.39 -0.01 2.20 16 47 H -0.01 -0.37 8.12 -2.39 -0.02 -0.39 16 48 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 49 H 0.01 0.34 8.13 -2.39 -0.02 0.33 16 50 H 0.03 0.97 7.80 -2.39 -0.02 0.95 16 51 H 0.08 1.86 6.80 -2.39 -0.02 1.85 16 52 H 0.10 1.93 6.36 -2.39 -0.02 1.92 16 Total: -1.00 -70.86 400.87 3.48 -67.38 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.90 Total: 13.92 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 7.45 Total: 12.29 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -6.85 Total: -117.91 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.06 Total: -21.13 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -70.86 3.48 -67.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088198784.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.573 kcal (2) G-P(sol) polarization free energy of solvation -70.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.79 seconds