Wall clock time and date at job start Wed Apr 1 2020 04:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47166 * 2 1 4 4 C 1.50695 * 109.47326 * 119.99979 * 2 1 3 5 5 N 1.30449 * 125.98872 * 300.00233 * 4 2 1 6 6 N 1.39932 * 108.90072 * 179.97438 * 5 4 2 7 7 H 0.96996 * 125.76271 * 179.97438 * 6 5 4 8 8 C 1.34269 * 108.48665 * 359.75073 * 6 5 4 9 9 C 1.38040 * 107.41626 * 0.39146 * 8 6 5 10 10 C 1.47425 * 126.41154 * 179.87195 * 9 8 6 11 11 O 1.21608 * 120.00238 * 179.69020 * 10 9 8 12 12 N 1.34777 * 120.00217 * 359.69055 * 10 9 8 13 13 C 1.46498 * 120.00189 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47345 * 180.02562 * 13 12 10 15 15 C 1.53363 * 111.69160 * 299.83807 * 14 13 12 16 16 C 1.54270 * 106.47021 * 242.43627 * 15 14 13 17 17 C 1.54686 * 104.11208 * 333.96868 * 16 15 14 18 18 C 1.54577 * 111.32291 * 180.02562 * 14 13 12 19 19 H 1.09008 * 111.92184 * 18.71285 * 18 14 13 20 20 N 1.46886 * 107.36346 * 255.62837 * 18 14 13 21 21 C 1.36942 * 125.25013 * 181.61224 * 20 18 14 22 22 H 1.07995 * 119.99687 * 15.94294 * 21 20 18 23 23 C 1.38809 * 120.00222 * 195.94080 * 21 20 18 24 24 N 1.31620 * 120.00060 * 28.75758 * 23 21 20 25 25 Si 1.86802 * 119.99981 * 208.76392 * 23 21 20 26 26 H 1.48500 * 109.47227 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.46940 * 120.00142 * 25 23 21 28 28 H 1.48503 * 109.47067 * 239.99731 * 25 23 21 29 29 C 1.46737 * 109.50228 * 1.87393 * 20 18 14 30 30 C 1.53866 * 111.25813 * 63.56045 * 14 13 12 31 31 H 1.08998 * 109.47374 * 60.00086 * 1 2 3 32 32 H 1.08999 * 109.47248 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47010 * 300.00057 * 1 2 3 34 34 H 1.08998 * 109.47121 * 240.00079 * 2 1 3 35 35 H 1.08999 * 109.47642 * 180.02562 * 3 2 1 36 36 H 1.09010 * 109.47246 * 300.00021 * 3 2 1 37 37 H 1.09004 * 109.47673 * 60.00233 * 3 2 1 38 38 H 1.08006 * 126.28782 * 180.24737 * 8 6 5 39 39 H 0.97003 * 119.99798 * 359.97438 * 12 10 9 40 40 H 1.09003 * 109.47161 * 60.00164 * 13 12 10 41 41 H 1.08997 * 109.47436 * 299.99861 * 13 12 10 42 42 H 1.09001 * 110.05791 * 1.69054 * 15 14 13 43 43 H 1.09000 * 110.05753 * 123.18181 * 15 14 13 44 44 H 1.09004 * 110.50039 * 92.62093 * 16 15 14 45 45 H 1.09000 * 110.50007 * 215.17410 * 16 15 14 46 46 H 1.09005 * 110.61051 * 278.83107 * 17 16 15 47 47 H 1.09001 * 110.61393 * 155.84934 * 17 16 15 48 48 H 0.96997 * 119.99735 * 6.04961 * 24 23 21 49 49 H 1.08998 * 110.04277 * 100.28845 * 29 20 18 50 50 H 1.09003 * 110.04470 * 221.74744 * 29 20 18 51 51 H 1.09008 * 110.56723 * 212.51668 * 30 14 13 52 52 H 1.08996 * 110.57030 * 335.23648 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7903 -0.3681 2.4657 6 7 2.4295 -1.2730 3.3204 7 1 2.4113 -1.2469 4.2898 8 6 3.0684 -2.1867 2.5722 9 6 2.8475 -1.8642 1.2483 10 6 3.3609 -2.5913 0.0731 11 8 3.0880 -2.2057 -1.0475 12 7 4.1326 -3.6835 0.2405 13 6 4.6423 -4.4064 -0.9273 14 6 5.4832 -5.5973 -0.4630 15 6 6.6807 -5.1497 0.3840 16 6 7.9463 -5.5810 -0.3855 17 6 7.4790 -6.7866 -1.2346 18 6 6.0441 -6.3918 -1.6645 19 1 6.0274 -5.8056 -2.5835 20 7 5.2498 -7.6213 -1.7863 21 6 5.4566 -8.6072 -2.7141 22 1 6.3891 -8.6507 -3.2569 23 6 4.4675 -9.5504 -2.9567 24 7 3.2015 -9.2366 -2.7806 25 14 4.9334 -11.2652 -3.5329 26 1 6.4103 -11.3628 -3.6530 27 1 4.4489 -12.2666 -2.5492 28 1 4.3112 -11.5291 -4.8552 29 6 4.1967 -7.6275 -0.7645 30 6 4.6293 -6.6136 0.3152 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8901 37 1 1.6767 1.9564 0.8900 38 1 3.6504 -3.0194 2.9388 39 1 4.3505 -3.9910 1.1343 40 1 5.2591 -3.7378 -1.5278 41 1 3.8053 -4.7648 -1.5266 42 1 6.6683 -4.0666 0.5061 43 1 6.6519 -5.6365 1.3588 44 1 8.2956 -4.7734 -1.0290 45 1 8.7312 -5.8815 0.3086 46 1 7.4633 -7.6960 -0.6337 47 1 8.1200 -6.9129 -2.1071 48 1 2.9533 -8.3237 -2.5668 49 1 3.2468 -7.3251 -1.2052 50 1 4.1064 -8.6218 -0.3270 51 1 5.2239 -7.1014 1.0877 52 1 3.7589 -6.1260 0.7541 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094457463.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:35 Heat of formation + Delta-G solvation = 39.651863 kcal Electronic energy + Delta-G solvation = -31487.931889 eV Core-core repulsion = 27488.523205 eV Total energy + Delta-G solvation = -3999.408684 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.70253 -39.98984 -38.62919 -35.82265 -34.82436 -34.11914 -31.95137 -31.10009 -30.81736 -30.00330 -27.86590 -27.22258 -26.55310 -24.74054 -23.83170 -23.57007 -22.77019 -20.53407 -20.22128 -19.74039 -19.36118 -18.91897 -18.08601 -17.45810 -16.57366 -15.56269 -15.48348 -15.09767 -14.90431 -14.82414 -14.66118 -14.42248 -13.89879 -13.70565 -13.58768 -13.34969 -13.29098 -13.16811 -13.15605 -12.73020 -12.27925 -12.17040 -11.64261 -11.60376 -11.44893 -11.33136 -11.25640 -11.16056 -10.92645 -10.73612 -10.63109 -10.42738 -10.31896 -10.18451 -10.05886 -9.96233 -9.82189 -9.78013 -9.63619 -9.48166 -9.13810 -8.80181 -8.33762 -6.89292 -6.03169 -3.09157 1.26057 1.98633 2.40997 3.30655 3.45357 3.53851 3.56630 3.69849 4.19142 4.35482 4.60620 4.76721 4.79240 4.87499 4.91777 4.96727 5.09623 5.14256 5.26795 5.35929 5.43544 5.46980 5.50524 5.55560 5.63097 5.70321 5.74361 5.76510 5.78186 5.91136 5.91942 5.96172 6.02965 6.09072 6.13552 6.14945 6.15936 6.27423 6.30362 6.33871 6.38825 6.49659 6.58851 6.66784 6.76781 6.81055 6.93694 7.08092 7.14135 7.27702 7.63058 7.88188 8.36032 8.54994 9.08851 9.87414 10.41209 11.27281 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015411 B = 0.002628 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.487306 B =10651.070013 C =11366.871475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.034 4.034 3 C -0.139 4.139 4 C 0.145 3.855 5 N -0.296 5.296 6 N -0.463 5.463 7 H 0.443 0.557 8 C 0.102 3.898 9 C -0.282 4.282 10 C 0.590 3.410 11 O -0.540 6.540 12 N -0.722 5.722 13 C 0.143 3.857 14 C -0.082 4.082 15 C -0.110 4.110 16 C -0.123 4.123 17 C -0.128 4.128 18 C 0.172 3.828 19 H 0.048 0.952 20 N -0.594 5.594 21 C -0.332 4.332 22 H 0.065 0.935 23 C -0.026 4.026 24 N -0.918 5.918 25 Si 1.065 2.935 26 H -0.293 1.293 27 H -0.291 1.291 28 H -0.295 1.295 29 C 0.147 3.853 30 C -0.123 4.123 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.119 0.881 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.185 0.815 39 H 0.394 0.606 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.070 0.930 47 H 0.054 0.946 48 H 0.270 0.730 49 H 0.026 0.974 50 H 0.043 0.957 51 H 0.064 0.936 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.794 17.037 14.280 22.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.054 4.054 3 C -0.197 4.197 4 C -0.023 4.023 5 N -0.118 5.118 6 N -0.167 5.167 7 H 0.288 0.712 8 C -0.051 4.051 9 C -0.297 4.297 10 C 0.377 3.623 11 O -0.418 6.418 12 N -0.372 5.372 13 C 0.020 3.980 14 C -0.083 4.083 15 C -0.148 4.148 16 C -0.161 4.161 17 C -0.168 4.168 18 C 0.064 3.936 19 H 0.066 0.934 20 N -0.318 5.318 21 C -0.460 4.460 22 H 0.083 0.917 23 C -0.228 4.228 24 N -0.559 5.559 25 Si 0.896 3.104 26 H -0.219 1.219 27 H -0.218 1.218 28 H -0.223 1.223 29 C 0.021 3.979 30 C -0.162 4.162 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.137 0.863 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.202 0.798 39 H 0.228 0.772 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.089 0.911 47 H 0.073 0.927 48 H 0.082 0.918 49 H 0.043 0.957 50 H 0.061 0.939 51 H 0.083 0.917 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.424 16.544 13.777 21.533 hybrid contribution 1.207 0.557 0.958 1.639 sum 1.631 17.101 14.735 22.632 Atomic orbital electron populations 1.21782 0.93839 1.02120 1.02015 1.20016 0.96061 0.95719 0.93611 1.21778 1.01102 0.94751 1.02028 1.22430 0.93601 0.92866 0.93429 1.77130 1.19976 1.14160 1.00488 1.46116 1.39595 1.21433 1.09568 0.71247 1.23145 0.96029 0.94570 0.91345 1.20358 1.13150 1.03533 0.92674 1.17225 0.77764 0.79666 0.87632 1.90718 1.58801 1.67215 1.25024 1.45872 1.52385 1.28800 1.10188 1.21317 0.97773 0.91905 0.87011 1.21877 0.94989 0.94167 0.97267 1.22136 0.94324 1.00017 0.98294 1.22313 0.96617 0.98637 0.98522 1.22931 0.97888 0.97174 0.98772 1.21539 0.90765 0.87708 0.93582 0.93401 1.44422 1.35082 1.17997 1.34326 1.19740 1.00971 1.06251 1.19063 0.91695 1.25661 0.92786 1.04300 1.00075 1.70724 1.16239 1.22567 1.46405 0.83533 0.74440 0.76257 0.76197 1.21909 1.21823 1.22297 1.21251 0.92134 0.96430 0.88066 1.22617 0.98492 0.96844 0.98210 0.91882 0.92581 0.92479 0.86276 0.92727 0.91906 0.92478 0.79826 0.77160 0.91463 0.90880 0.92176 0.91823 0.92263 0.92447 0.91116 0.92677 0.91809 0.95652 0.93870 0.91733 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.18 37.16 0.34 -1.11 16 2 C -0.03 -0.40 3.26 -91.78 -0.30 -0.70 16 3 C -0.14 -1.38 9.17 37.16 0.34 -1.04 16 4 C 0.15 1.77 5.77 -82.02 -0.47 1.30 16 5 N -0.30 -3.30 12.63 33.89 0.43 -2.87 16 6 N -0.46 -3.53 7.29 30.85 0.22 -3.31 16 7 H 0.44 1.73 8.96 -182.73 -1.64 0.09 16 8 C 0.10 0.80 11.52 -16.56 -0.19 0.61 16 9 C -0.28 -3.32 6.13 -105.07 -0.64 -3.96 16 10 C 0.59 8.34 7.81 -12.52 -0.10 8.24 16 11 O -0.54 -9.53 14.56 5.27 0.08 -9.45 16 12 N -0.72 -8.94 4.62 -61.38 -0.28 -9.22 16 13 C 0.14 2.19 4.45 -4.04 -0.02 2.17 16 14 C -0.08 -1.26 0.53 -153.04 -0.08 -1.34 16 15 C -0.11 -1.36 5.59 -25.88 -0.14 -1.50 16 16 C -0.12 -1.64 6.85 -25.18 -0.17 -1.81 16 17 C -0.13 -2.23 6.22 -24.84 -0.15 -2.38 16 18 C 0.17 3.37 3.59 -65.89 -0.24 3.13 16 19 H 0.05 1.01 7.93 -51.92 -0.41 0.60 16 20 N -0.59 -14.35 2.90 -162.31 -0.47 -14.82 16 21 C -0.33 -9.16 9.70 -15.06 -0.15 -9.30 16 22 H 0.07 1.80 7.98 -52.49 -0.42 1.38 16 23 C -0.03 -0.75 5.11 -17.43 -0.09 -0.84 16 24 N -0.92 -27.67 12.97 55.49 0.72 -26.95 16 25 Si 1.07 25.48 30.01 -169.99 -5.10 20.38 16 26 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.30 -7.07 7.11 56.52 0.40 -6.66 16 29 C 0.15 3.30 5.39 -3.23 -0.02 3.28 16 30 C -0.12 -2.01 5.82 -25.60 -0.15 -2.16 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 34 H 0.12 1.65 5.60 -51.93 -0.29 1.36 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.18 0.69 7.46 -52.48 -0.39 0.30 16 39 H 0.39 3.73 6.58 -40.82 -0.27 3.46 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.06 0.66 7.48 -51.93 -0.39 0.27 16 43 H 0.06 0.71 7.27 -51.93 -0.38 0.34 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.07 1.35 8.06 -51.93 -0.42 0.93 16 47 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 48 H 0.27 8.18 5.90 -40.82 -0.24 7.94 16 49 H 0.03 0.64 6.44 -51.93 -0.33 0.30 16 50 H 0.04 1.07 8.09 -51.93 -0.42 0.65 16 51 H 0.06 0.99 7.41 -51.92 -0.38 0.60 16 52 H 0.06 0.88 7.21 -51.93 -0.37 0.50 16 LS Contribution 404.31 15.07 6.09 6.09 Total: -1.00 -34.37 404.31 -10.35 -44.72 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -9.80 Total: 2.86 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -2.23 Total: -7.42 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: 0.62 Total: -57.18 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.08 Total: -9.45 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.10 Total: 20.38 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.37 -10.35 -44.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094457463.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.369 kcal (2) G-P(sol) polarization free energy of solvation -34.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds