Wall clock time and date at job start Wed Apr 1 2020 04:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47166 * 2 1 4 4 C 1.50695 * 109.47326 * 119.99979 * 2 1 3 5 5 N 1.30449 * 125.98872 * 300.00233 * 4 2 1 6 6 N 1.39932 * 108.90072 * 179.97438 * 5 4 2 7 7 H 0.96996 * 125.76271 * 179.97438 * 6 5 4 8 8 C 1.34269 * 108.48665 * 359.75073 * 6 5 4 9 9 C 1.38040 * 107.41626 * 0.39146 * 8 6 5 10 10 C 1.47425 * 126.41154 * 179.87195 * 9 8 6 11 11 O 1.21608 * 120.00238 * 179.69020 * 10 9 8 12 12 N 1.34777 * 120.00217 * 359.69055 * 10 9 8 13 13 C 1.46498 * 120.00189 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47345 * 180.02562 * 13 12 10 15 15 C 1.53363 * 111.69160 * 299.83807 * 14 13 12 16 16 C 1.54270 * 106.47021 * 242.43627 * 15 14 13 17 17 C 1.54686 * 104.11208 * 333.96868 * 16 15 14 18 18 C 1.54577 * 111.32291 * 180.02562 * 14 13 12 19 19 H 1.09008 * 111.92184 * 18.71285 * 18 14 13 20 20 N 1.46886 * 107.36346 * 255.62837 * 18 14 13 21 21 C 1.36942 * 125.25013 * 181.61224 * 20 18 14 22 22 H 1.07995 * 119.99687 * 15.94294 * 21 20 18 23 23 C 1.38809 * 120.00222 * 195.94080 * 21 20 18 24 24 N 1.31620 * 120.00060 * 28.75758 * 23 21 20 25 25 Si 1.86802 * 119.99981 * 208.76392 * 23 21 20 26 26 H 1.48500 * 109.47227 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.46940 * 120.00142 * 25 23 21 28 28 H 1.48503 * 109.47067 * 239.99731 * 25 23 21 29 29 C 1.46737 * 109.50228 * 1.87393 * 20 18 14 30 30 C 1.53866 * 111.25813 * 63.56045 * 14 13 12 31 31 H 1.08998 * 109.47374 * 60.00086 * 1 2 3 32 32 H 1.08999 * 109.47248 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47010 * 300.00057 * 1 2 3 34 34 H 1.08998 * 109.47121 * 240.00079 * 2 1 3 35 35 H 1.08999 * 109.47642 * 180.02562 * 3 2 1 36 36 H 1.09010 * 109.47246 * 300.00021 * 3 2 1 37 37 H 1.09004 * 109.47673 * 60.00233 * 3 2 1 38 38 H 1.08006 * 126.28782 * 180.24737 * 8 6 5 39 39 H 0.97003 * 119.99798 * 359.97438 * 12 10 9 40 40 H 1.09003 * 109.47161 * 60.00164 * 13 12 10 41 41 H 1.08997 * 109.47436 * 299.99861 * 13 12 10 42 42 H 1.09001 * 110.05791 * 1.69054 * 15 14 13 43 43 H 1.09000 * 110.05753 * 123.18181 * 15 14 13 44 44 H 1.09004 * 110.50039 * 92.62093 * 16 15 14 45 45 H 1.09000 * 110.50007 * 215.17410 * 16 15 14 46 46 H 1.09005 * 110.61051 * 278.83107 * 17 16 15 47 47 H 1.09001 * 110.61393 * 155.84934 * 17 16 15 48 48 H 0.96997 * 119.99735 * 6.04961 * 24 23 21 49 49 H 1.08998 * 110.04277 * 100.28845 * 29 20 18 50 50 H 1.09003 * 110.04470 * 221.74744 * 29 20 18 51 51 H 1.09008 * 110.56723 * 212.51668 * 30 14 13 52 52 H 1.08996 * 110.57030 * 335.23648 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7903 -0.3681 2.4657 6 7 2.4295 -1.2730 3.3204 7 1 2.4113 -1.2469 4.2898 8 6 3.0684 -2.1867 2.5722 9 6 2.8475 -1.8642 1.2483 10 6 3.3609 -2.5913 0.0731 11 8 3.0880 -2.2057 -1.0475 12 7 4.1326 -3.6835 0.2405 13 6 4.6423 -4.4064 -0.9273 14 6 5.4832 -5.5973 -0.4630 15 6 6.6807 -5.1497 0.3840 16 6 7.9463 -5.5810 -0.3855 17 6 7.4790 -6.7866 -1.2346 18 6 6.0441 -6.3918 -1.6645 19 1 6.0274 -5.8056 -2.5835 20 7 5.2498 -7.6213 -1.7863 21 6 5.4566 -8.6072 -2.7141 22 1 6.3891 -8.6507 -3.2569 23 6 4.4675 -9.5504 -2.9567 24 7 3.2015 -9.2366 -2.7806 25 14 4.9334 -11.2652 -3.5329 26 1 6.4103 -11.3628 -3.6530 27 1 4.4489 -12.2666 -2.5492 28 1 4.3112 -11.5291 -4.8552 29 6 4.1967 -7.6275 -0.7645 30 6 4.6293 -6.6136 0.3152 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8901 37 1 1.6767 1.9564 0.8900 38 1 3.6504 -3.0194 2.9388 39 1 4.3505 -3.9910 1.1343 40 1 5.2591 -3.7378 -1.5278 41 1 3.8053 -4.7648 -1.5266 42 1 6.6683 -4.0666 0.5061 43 1 6.6519 -5.6365 1.3588 44 1 8.2956 -4.7734 -1.0290 45 1 8.7312 -5.8815 0.3086 46 1 7.4633 -7.6960 -0.6337 47 1 8.1200 -6.9129 -2.1071 48 1 2.9533 -8.3237 -2.5668 49 1 3.2468 -7.3251 -1.2052 50 1 4.1064 -8.6218 -0.3270 51 1 5.2239 -7.1014 1.0877 52 1 3.7589 -6.1260 0.7541 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094457463.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:33 Heat of formation + Delta-G solvation = 16.730422 kcal Electronic energy + Delta-G solvation = -31488.925837 eV Core-core repulsion = 27488.523205 eV Total energy + Delta-G solvation = -4000.402632 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.48609 -41.33072 -39.82466 -36.75083 -36.39499 -35.40455 -33.57909 -32.32753 -31.73340 -31.24324 -29.20009 -28.15289 -28.03839 -25.99491 -25.69452 -24.34916 -23.77503 -22.00810 -21.55737 -20.95762 -20.27892 -19.86981 -19.48952 -19.14654 -17.58188 -16.79450 -16.63777 -16.35277 -16.12172 -15.71797 -15.67634 -15.49607 -15.48415 -15.17082 -15.06760 -14.84861 -14.57498 -14.13559 -14.07539 -13.94605 -13.67124 -13.22758 -13.05663 -12.94450 -12.76861 -12.49387 -12.39964 -12.21663 -12.17469 -12.04277 -11.91183 -11.86037 -11.82330 -11.60497 -11.54518 -11.47674 -11.45746 -11.17133 -10.72007 -10.52597 -10.46079 -10.18038 -9.73652 -8.95224 -8.25793 -5.28212 0.55282 1.09476 1.56342 1.64535 1.80394 1.80675 2.24048 2.45756 2.65868 3.20636 3.38997 3.44161 3.58926 3.65771 3.69951 3.85269 4.09023 4.12415 4.20957 4.25146 4.31272 4.36376 4.39154 4.41417 4.46318 4.54820 4.58646 4.61444 4.73789 4.77705 4.79586 4.90238 4.93193 4.94533 4.98162 5.04352 5.10067 5.11191 5.15756 5.24581 5.27822 5.32050 5.38018 5.39608 5.43855 5.48703 5.54969 5.59559 5.76249 6.29047 6.36187 6.49090 6.69928 6.98052 7.34109 7.77906 8.34462 9.02742 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015411 B = 0.002628 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.487306 B =10651.070013 C =11366.871475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.039 4.039 3 C -0.131 4.131 4 C 0.130 3.870 5 N -0.316 5.316 6 N -0.445 5.445 7 H 0.462 0.538 8 C 0.139 3.861 9 C -0.321 4.321 10 C 0.589 3.411 11 O -0.587 6.587 12 N -0.704 5.704 13 C 0.156 3.844 14 C -0.066 4.066 15 C -0.100 4.100 16 C -0.112 4.112 17 C -0.122 4.122 18 C 0.154 3.846 19 H 0.024 0.976 20 N -0.613 5.613 21 C -0.333 4.333 22 H 0.058 0.942 23 C -0.084 4.084 24 N -0.949 5.949 25 Si 1.116 2.884 26 H -0.272 1.272 27 H -0.288 1.288 28 H -0.295 1.295 29 C 0.149 3.851 30 C -0.106 4.106 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.235 0.765 39 H 0.414 0.586 40 H 0.062 0.938 41 H 0.029 0.971 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.067 0.933 45 H 0.083 0.917 46 H 0.054 0.946 47 H 0.042 0.958 48 H 0.254 0.746 49 H -0.011 1.011 50 H 0.011 0.989 51 H 0.089 0.911 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.811 17.978 18.047 25.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.060 4.060 3 C -0.189 4.189 4 C -0.038 4.038 5 N -0.138 5.138 6 N -0.151 5.151 7 H 0.310 0.690 8 C -0.016 4.016 9 C -0.336 4.336 10 C 0.378 3.622 11 O -0.468 6.468 12 N -0.356 5.356 13 C 0.031 3.969 14 C -0.067 4.067 15 C -0.137 4.137 16 C -0.150 4.150 17 C -0.162 4.162 18 C 0.047 3.953 19 H 0.041 0.959 20 N -0.337 5.337 21 C -0.462 4.462 22 H 0.075 0.925 23 C -0.280 4.280 24 N -0.593 5.593 25 Si 0.941 3.059 26 H -0.197 1.197 27 H -0.215 1.215 28 H -0.222 1.222 29 C 0.023 3.977 30 C -0.144 4.144 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.251 0.749 39 H 0.252 0.748 40 H 0.081 0.919 41 H 0.047 0.953 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.086 0.914 45 H 0.102 0.898 46 H 0.073 0.927 47 H 0.061 0.939 48 H 0.065 0.935 49 H 0.007 0.993 50 H 0.030 0.970 51 H 0.107 0.893 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.475 17.521 17.620 24.972 hybrid contribution 0.579 0.299 -0.237 0.693 sum 3.054 17.820 17.383 25.081 Atomic orbital electron populations 1.21728 0.93181 1.01404 1.02818 1.19965 0.96667 0.96424 0.92924 1.21711 1.00562 0.93827 1.02772 1.22492 0.94115 0.93402 0.93809 1.77072 1.20959 1.15436 1.00322 1.46165 1.38160 1.20371 1.10407 0.68959 1.23746 0.93910 0.94388 0.89548 1.20239 1.15479 1.04419 0.93449 1.17617 0.77158 0.79594 0.87827 1.90704 1.60445 1.68505 1.27131 1.45562 1.51913 1.28030 1.10122 1.20948 0.96122 0.92034 0.87771 1.21744 0.96147 0.93116 0.95662 1.22137 0.91316 1.01899 0.98376 1.22275 0.97752 0.96565 0.98430 1.22765 0.95863 0.98658 0.98918 1.21838 0.92186 0.86548 0.94723 0.95862 1.44696 1.35751 1.19197 1.34096 1.19977 1.00209 1.07085 1.18912 0.92456 1.27025 0.92413 1.07792 1.00728 1.70845 1.17358 1.21624 1.49487 0.82852 0.75286 0.72081 0.75655 1.19713 1.21454 1.22231 1.21163 0.90629 0.96602 0.89272 1.22544 0.99889 0.95323 0.96594 0.90773 0.94005 0.91899 0.89023 0.93429 0.90820 0.91983 0.74886 0.74848 0.91931 0.95296 0.89585 0.88950 0.91413 0.89799 0.92691 0.93919 0.93533 0.99306 0.97028 0.89260 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.18 71.98 0.66 -2.16 16 2 C -0.04 -0.95 3.26 -11.54 -0.04 -0.98 16 3 C -0.13 -2.58 9.17 71.98 0.66 -1.92 16 4 C 0.13 3.06 5.77 43.51 0.25 3.32 16 5 N -0.32 -6.41 12.63 -46.68 -0.59 -7.00 16 6 N -0.45 -5.08 7.29 -56.31 -0.41 -5.49 16 7 H 0.46 1.54 8.96 -213.43 -1.91 -0.38 16 8 C 0.14 1.55 11.52 84.27 0.97 2.52 16 9 C -0.32 -6.96 6.13 -20.16 -0.12 -7.08 16 10 C 0.59 16.28 7.81 86.66 0.68 16.96 16 11 O -0.59 -21.67 14.56 -4.06 -0.06 -21.73 16 12 N -0.70 -15.96 4.62 -466.37 -2.16 -18.12 16 13 C 0.16 4.73 4.45 86.38 0.38 5.12 16 14 C -0.07 -1.90 0.53 -51.23 -0.03 -1.93 16 15 C -0.10 -1.97 5.59 31.15 0.17 -1.80 16 16 C -0.11 -2.55 6.85 31.60 0.22 -2.34 16 17 C -0.12 -4.14 6.22 31.82 0.20 -3.94 16 18 C 0.15 6.11 3.59 46.11 0.17 6.28 16 19 H 0.02 1.04 7.93 -2.38 -0.02 1.02 16 20 N -0.61 -30.84 2.90 -667.44 -1.93 -32.77 16 21 C -0.33 -19.07 9.70 84.03 0.81 -18.26 16 22 H 0.06 3.29 7.98 -2.91 -0.02 3.27 16 23 C -0.08 -4.95 5.11 84.86 0.43 -4.51 16 24 N -0.95 -60.17 12.97 21.65 0.28 -59.89 16 25 Si 1.12 52.74 30.01 68.60 2.06 54.80 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 27 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 28 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 29 C 0.15 6.97 5.39 86.77 0.47 7.43 16 30 C -0.11 -3.24 5.82 31.33 0.18 -3.06 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.04 0.97 8.14 -2.39 -0.02 0.96 16 33 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.09 2.72 5.60 -2.39 -0.01 2.71 16 35 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.23 0.10 7.46 -2.91 -0.02 0.08 16 39 H 0.41 5.89 6.58 -92.71 -0.61 5.28 16 40 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.09 1.36 7.48 -2.39 -0.02 1.35 16 43 H 0.09 1.42 7.27 -2.39 -0.02 1.40 16 44 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.05 2.03 8.06 -2.38 -0.02 2.01 16 47 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.25 16.49 5.90 -92.71 -0.55 15.94 16 49 H -0.01 -0.57 6.44 -2.39 -0.02 -0.59 16 50 H 0.01 0.59 8.09 -2.39 -0.02 0.57 16 51 H 0.09 2.37 7.41 -2.38 -0.02 2.36 16 52 H 0.09 2.23 7.21 -2.39 -0.02 2.21 16 Total: -1.00 -83.74 404.31 1.89 -81.84 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -1.36 Total: 14.72 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 6.07 Total: -6.36 kcal Atomic # 7 Polarization: -118.46 SS G_CDS: -4.81 Total: -123.27 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.06 Total: -21.73 kcal Atomic # 14 Polarization: 52.74 SS G_CDS: 2.06 Total: 54.80 kcal Total: -83.74 1.89 -81.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094457463.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.574 kcal (2) G-P(sol) polarization free energy of solvation -83.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds