Wall clock time and date at job start Wed Apr 1 2020 06:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46623 * 2 1 4 4 C 1.52999 * 109.46626 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47592 * 300.00035 * 4 3 2 6 6 C 1.52997 * 109.46991 * 60.00378 * 4 3 2 7 7 C 1.50706 * 109.46957 * 180.02562 * 4 3 2 8 8 O 1.21279 * 119.99692 * 359.97438 * 7 4 3 9 9 N 1.34777 * 120.00142 * 180.02562 * 7 4 3 10 10 C 1.46496 * 119.99867 * 180.02562 * 9 7 4 11 11 H 1.09003 * 110.42216 * 36.02939 * 10 9 7 12 12 C 1.54731 * 110.46499 * 158.66082 * 10 9 7 13 13 C 1.53515 * 101.49484 * 143.02401 * 12 10 9 14 14 C 1.53043 * 115.28750 * 105.27432 * 13 12 10 15 15 N 1.47759 * 85.82398 * 93.67412 * 14 13 12 16 16 C 1.36937 * 134.41267 * 203.96676 * 15 14 13 17 17 H 1.08004 * 119.99254 * 179.97438 * 16 15 14 18 18 C 1.38803 * 120.00002 * 0.02562 * 16 15 14 19 19 N 1.31620 * 120.00402 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99911 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46972 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47237 * 119.99981 * 20 18 16 23 23 H 1.48507 * 109.47097 * 239.99903 * 20 18 16 24 24 C 1.47761 * 91.17151 * 23.96914 * 15 14 13 25 25 N 1.46160 * 106.64463 * 335.06864 * 13 12 10 26 26 C 1.37269 * 142.21928 * 196.46252 * 25 13 12 27 27 C 1.34528 * 106.91169 * 179.97438 * 26 25 13 28 28 N 1.33978 * 108.04771 * 0.02562 * 27 26 25 29 29 C 1.30858 * 109.35209 * 0.03337 * 28 27 26 30 30 H 1.09001 * 109.47362 * 60.00551 * 1 2 3 31 31 H 1.09002 * 109.46716 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47486 * 299.99829 * 1 2 3 33 33 H 1.09000 * 109.47486 * 240.00171 * 2 1 3 34 34 H 1.09001 * 109.47362 * 119.99448 * 2 1 3 35 35 H 1.08993 * 109.46955 * 300.00075 * 3 2 1 36 36 H 1.09000 * 109.47050 * 59.99904 * 3 2 1 37 37 H 1.09002 * 109.47045 * 60.00253 * 5 4 3 38 38 H 1.09001 * 109.47375 * 180.02562 * 5 4 3 39 39 H 1.09000 * 109.47140 * 300.00346 * 5 4 3 40 40 H 1.09000 * 109.47611 * 59.99933 * 6 4 3 41 41 H 1.09001 * 109.47289 * 179.97438 * 6 4 3 42 42 H 1.09002 * 109.47153 * 299.99445 * 6 4 3 43 43 H 0.96999 * 120.00047 * 359.97438 * 9 7 4 44 44 H 1.09003 * 111.01836 * 261.07223 * 12 10 9 45 45 H 1.08994 * 111.02382 * 24.96959 * 12 10 9 46 46 H 1.08996 * 113.81437 * 207.89864 * 14 13 12 47 47 H 1.08996 * 113.81524 * 339.45291 * 14 13 12 48 48 H 0.96999 * 120.00407 * 179.97438 * 19 18 16 49 49 H 1.09001 * 113.81112 * 221.79175 * 24 15 14 50 50 H 1.08998 * 113.81598 * 90.25649 * 24 15 14 51 51 H 1.07994 * 126.54489 * 359.92052 * 26 25 13 52 52 H 1.07997 * 125.97670 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0795 0.7216 1.2501 6 6 4.0804 0.7213 -1.2483 7 6 4.0722 2.8635 0.0013 8 8 3.2840 3.7852 0.0008 9 7 5.3972 3.1098 0.0014 10 6 5.8855 4.4911 0.0026 11 1 5.2334 5.1244 0.6041 12 6 7.3389 4.5507 0.5300 13 6 7.9428 5.6456 -0.3605 14 6 8.1586 6.9983 0.3221 15 7 9.5296 6.5198 0.5956 16 6 10.4830 6.8260 1.5297 17 1 11.4357 6.3174 1.5155 18 6 10.2245 7.7890 2.4953 19 7 9.0632 8.4083 2.5129 20 14 11.5253 8.2072 3.7691 21 1 12.7337 7.3768 3.5335 22 1 11.8824 9.6443 3.6586 23 1 10.9936 7.9323 5.1282 24 6 9.4607 5.5790 -0.5417 25 7 7.1518 5.6695 -1.5893 26 6 7.1731 6.1233 -2.8846 27 6 6.0167 5.7376 -3.4535 28 7 5.3060 5.0678 -2.5363 29 6 5.9786 5.0229 -1.4146 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 1.6765 1.9563 -0.8899 36 1 1.6765 1.9564 0.8900 37 1 3.7162 -0.3061 1.2501 38 1 5.1695 0.7220 1.2508 39 1 3.7157 1.2355 2.1399 40 1 3.7174 1.2349 -2.1385 41 1 5.1704 0.7216 -1.2481 42 1 3.7171 -0.3064 -1.2483 43 1 6.0276 2.3726 0.0014 44 1 7.3621 4.8434 1.5797 45 1 7.8487 3.5991 0.3798 46 1 8.1167 7.8472 -0.3602 47 1 7.5550 7.1402 1.2186 48 1 8.8824 9.0811 3.1879 49 1 9.8868 4.5987 -0.3283 50 1 9.8104 6.0010 -1.4838 51 1 7.9664 6.6839 -3.3567 52 1 5.7141 5.9335 -4.4715 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101642683.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:44:46 Heat of formation + Delta-G solvation = 61.051731 kcal Electronic energy + Delta-G solvation = -31574.991934 eV Core-core repulsion = 27576.511218 eV Total energy + Delta-G solvation = -3998.480716 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -43.62723 -41.20960 -40.14039 -37.77208 -36.73492 -34.97324 -33.79236 -33.25066 -31.65308 -29.68804 -28.96692 -28.21718 -27.39412 -27.02795 -26.18766 -24.56665 -23.58733 -22.68979 -22.15572 -21.06745 -20.21000 -19.95735 -18.89825 -17.95956 -17.62518 -17.32840 -16.68952 -16.38519 -16.18032 -15.87719 -15.77325 -15.40417 -15.28545 -15.10016 -14.88887 -14.82811 -14.51024 -14.09474 -13.90909 -13.76972 -13.60288 -13.30146 -13.27837 -13.21417 -13.05781 -12.85019 -12.69581 -12.68253 -12.63409 -12.56607 -12.10950 -11.94220 -11.92361 -11.78384 -11.67557 -11.52857 -11.28415 -10.98704 -10.88787 -10.64447 -10.45487 -10.30486 -9.34462 -9.09754 -7.98109 -5.34702 1.02562 1.46648 1.47031 1.57494 1.61004 1.74525 1.99468 2.31563 2.44551 2.84450 3.06650 3.26904 3.35866 3.45187 3.54743 3.70544 3.77448 3.93679 4.04027 4.11521 4.21398 4.25956 4.31719 4.38136 4.54340 4.57787 4.60862 4.66539 4.70535 4.71307 4.78617 4.82056 4.85257 4.86356 4.98434 4.98868 5.04649 5.10080 5.11226 5.14004 5.24603 5.28450 5.34327 5.35423 5.39756 5.46219 5.51598 5.56612 5.76939 5.90513 6.11149 6.52618 6.80691 7.17191 7.28728 7.51215 8.37734 9.18616 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014369 B = 0.002745 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.180824 B =10196.645747 C =11368.062253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.093 4.093 4 C -0.073 4.073 5 C -0.141 4.141 6 C -0.137 4.137 7 C 0.521 3.479 8 O -0.576 6.576 9 N -0.701 5.701 10 C 0.236 3.764 11 H 0.090 0.910 12 C -0.082 4.082 13 C 0.124 3.876 14 C 0.168 3.832 15 N -0.622 5.622 16 C -0.231 4.231 17 H 0.095 0.905 18 C -0.061 4.061 19 N -0.953 5.953 20 Si 0.979 3.021 21 H -0.260 1.260 22 H -0.298 1.298 23 H -0.291 1.291 24 C 0.131 3.869 25 N -0.458 5.458 26 C -0.032 4.032 27 C -0.041 4.041 28 N -0.502 5.502 29 C 0.158 3.842 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.051 0.949 40 H 0.041 0.959 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.417 0.583 44 H 0.107 0.893 45 H 0.126 0.874 46 H 0.010 0.990 47 H 0.058 0.942 48 H 0.250 0.750 49 H 0.086 0.914 50 H 0.048 0.952 51 H 0.190 0.810 52 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.851 -20.450 -6.302 22.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.132 4.132 4 C -0.076 4.076 5 C -0.198 4.198 6 C -0.194 4.194 7 C 0.309 3.691 8 O -0.454 6.454 9 N -0.354 5.354 10 C 0.127 3.873 11 H 0.108 0.892 12 C -0.120 4.120 13 C 0.039 3.961 14 C 0.041 3.959 15 N -0.349 5.349 16 C -0.359 4.359 17 H 0.113 0.887 18 C -0.255 4.255 19 N -0.601 5.601 20 Si 0.808 3.192 21 H -0.184 1.184 22 H -0.226 1.226 23 H -0.218 1.218 24 C 0.005 3.995 25 N -0.141 5.141 26 C -0.165 4.165 27 C -0.189 4.189 28 N -0.222 5.222 29 C -0.106 4.106 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.089 0.911 42 H 0.113 0.887 43 H 0.255 0.745 44 H 0.125 0.875 45 H 0.144 0.856 46 H 0.028 0.972 47 H 0.076 0.924 48 H 0.059 0.941 49 H 0.104 0.896 50 H 0.065 0.935 51 H 0.207 0.793 52 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -8.800 -19.895 -6.132 22.602 hybrid contribution 1.463 1.805 0.440 2.365 sum -7.337 -18.091 -5.692 20.335 Atomic orbital electron populations 1.21787 0.95943 1.02106 1.01384 1.21655 0.95834 0.94842 1.03396 1.21404 0.92208 0.98094 1.01444 1.20822 0.97200 0.89741 0.99805 1.21964 1.02160 1.01483 0.94198 1.21905 1.01768 1.01364 0.94404 1.21361 0.81724 0.92405 0.73572 1.90700 1.56347 1.48130 1.50224 1.45748 1.07615 1.06672 1.75346 1.19738 0.96251 0.84734 0.86563 0.89195 1.22540 0.90818 0.98679 1.00006 1.23308 0.92339 0.98941 0.81536 1.22300 0.86870 0.90933 0.95767 1.46035 1.14089 1.44612 1.30186 1.19414 0.94977 1.17505 1.04011 0.88717 1.25639 0.99314 0.98885 1.01616 1.69987 1.23804 1.29182 1.37112 0.85000 0.78651 0.77189 0.78392 1.18426 1.22561 1.21760 1.22843 0.89985 0.95530 0.91118 1.46585 1.17468 1.40406 1.09677 1.22829 1.03263 1.07324 0.83094 1.22743 0.92220 1.03243 1.00646 1.69792 1.31602 1.21200 0.99564 1.24879 0.85979 1.02013 0.97749 0.93546 0.91372 0.93285 0.90524 0.90122 0.93711 0.93086 0.88756 0.90589 0.92937 0.93937 0.91117 0.88653 0.74466 0.87495 0.85584 0.97239 0.92412 0.94091 0.89577 0.93473 0.79280 0.78659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 71.98 0.71 -1.38 16 2 C -0.12 -1.58 5.23 30.60 0.16 -1.42 16 3 C -0.09 -1.89 3.56 30.60 0.11 -1.78 16 4 C -0.07 -1.34 0.64 -52.93 -0.03 -1.37 16 5 C -0.14 -1.78 8.02 71.98 0.58 -1.21 16 6 C -0.14 -2.03 8.02 71.98 0.58 -1.45 16 7 C 0.52 14.40 6.47 87.66 0.57 14.97 16 8 O -0.58 -21.99 15.69 -3.03 -0.05 -22.04 16 9 N -0.70 -16.97 4.95 -441.82 -2.19 -19.16 16 10 C 0.24 7.26 3.23 45.14 0.15 7.40 16 11 H 0.09 3.25 7.66 -2.39 -0.02 3.23 16 12 C -0.08 -2.32 6.17 31.36 0.19 -2.13 16 13 C 0.12 4.30 1.56 5.61 0.01 4.31 16 14 C 0.17 7.66 6.94 86.15 0.60 8.26 16 15 N -0.62 -28.90 3.69 -731.69 -2.70 -31.60 16 16 C -0.23 -11.83 10.70 84.03 0.90 -10.93 16 17 H 0.10 4.55 7.83 -2.91 -0.02 4.53 16 18 C -0.06 -3.26 5.50 84.86 0.47 -2.79 16 19 N -0.95 -54.97 11.39 21.65 0.25 -54.73 16 20 Si 0.98 43.13 29.55 68.60 2.03 45.15 16 21 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 22 H -0.30 -13.46 7.11 99.48 0.71 -12.76 16 23 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 24 C 0.13 4.62 8.46 86.14 0.73 5.35 16 25 N -0.46 -15.61 3.37 -481.36 -1.62 -17.24 16 26 C -0.03 -1.00 12.03 82.99 1.00 0.00 16 27 C -0.04 -1.28 11.86 83.52 0.99 -0.29 16 28 N -0.50 -18.84 11.25 -187.11 -2.11 -20.94 16 29 C 0.16 5.59 8.22 138.31 1.14 6.73 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.08 0.84 6.43 -2.39 -0.02 0.83 16 34 H 0.08 0.83 6.43 -2.39 -0.02 0.81 16 35 H 0.04 1.12 8.10 -2.39 -0.02 1.10 16 36 H 0.05 1.19 8.10 -2.39 -0.02 1.18 16 37 H 0.09 0.78 6.43 -2.39 -0.02 0.76 16 38 H 0.08 0.74 7.56 -2.39 -0.02 0.72 16 39 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.07 0.88 7.56 -2.39 -0.02 0.86 16 42 H 0.09 0.93 6.43 -2.39 -0.02 0.91 16 43 H 0.42 6.98 7.22 -92.71 -0.67 6.31 16 44 H 0.11 3.31 7.92 -2.39 -0.02 3.29 16 45 H 0.13 2.64 7.76 -2.39 -0.02 2.62 16 46 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.06 2.96 7.08 -2.39 -0.02 2.94 16 48 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 49 H 0.09 2.59 8.09 -2.39 -0.02 2.57 16 50 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 51 H 0.19 4.78 8.06 -2.91 -0.02 4.76 16 52 H 0.20 4.75 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -74.46 409.76 2.69 -71.76 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 0.25 Total: 26.53 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: 8.84 Total: 22.26 kcal Atomic # 7 Polarization: -135.30 SS G_CDS: -8.37 Total: -143.67 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.05 Total: -22.04 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -74.46 2.69 -71.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101642683.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.815 kcal (2) G-P(sol) polarization free energy of solvation -74.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds