Wall clock time and date at job start Wed Apr 1 2020 06:44:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53006 * 109.47127 * 2 1
4 4 C 1.52992 * 109.47482 * 239.99653 * 2 1 3
5 5 C 1.53002 * 109.47278 * 295.00291 * 4 2 1
6 6 C 1.52997 * 109.47192 * 179.97438 * 5 4 2
7 7 C 1.50697 * 109.47173 * 179.97438 * 6 5 4
8 8 O 1.21287 * 119.99913 * 0.02562 * 7 6 5
9 9 N 1.34781 * 120.00428 * 179.97438 * 7 6 5
10 10 C 1.46497 * 120.00036 * 180.02562 * 9 7 6
11 11 H 1.08997 * 110.41597 * 34.30002 * 10 9 7
12 12 C 1.54739 * 110.46363 * 156.79025 * 10 9 7
13 13 C 1.53712 * 101.40427 * 142.93798 * 12 10 9
14 14 C 1.53038 * 115.17691 * 105.40262 * 13 12 10
15 15 N 1.47761 * 85.81968 * 93.69230 * 14 13 12
16 16 C 1.36933 * 134.41143 * 204.00238 * 15 14 13
17 17 H 1.07999 * 119.99845 * 179.97438 * 16 15 14
18 18 C 1.38815 * 120.00223 * 359.95406 * 16 15 14
19 19 N 1.31622 * 119.99941 * 0.02562 * 18 16 15
20 20 Si 1.86796 * 120.00184 * 179.97438 * 18 16 15
21 21 H 1.48492 * 109.47327 * 59.99814 * 20 18 16
22 22 H 1.48502 * 109.47164 * 180.02562 * 20 18 16
23 23 H 1.48502 * 109.47103 * 300.00000 * 20 18 16
24 24 C 1.47758 * 91.17398 * 23.96907 * 15 14 13
25 25 N 1.46165 * 106.70366 * 335.23149 * 13 12 10
26 26 C 1.37266 * 142.21995 * 196.36438 * 25 13 12
27 27 C 1.34527 * 106.91081 * 179.97438 * 26 25 13
28 28 N 1.33975 * 108.04966 * 0.02562 * 27 26 25
29 29 C 1.30854 * 109.35037 * 0.03381 * 28 27 26
30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3
32 32 H 1.09004 * 109.47261 * 300.00303 * 1 2 3
33 33 H 1.08998 * 109.47533 * 119.99499 * 2 1 3
34 34 H 1.08993 * 109.46955 * 60.00011 * 3 2 1
35 35 H 1.09000 * 109.47050 * 179.97438 * 3 2 1
36 36 H 1.09001 * 109.47002 * 299.99574 * 3 2 1
37 37 H 1.09002 * 109.46906 * 55.00224 * 4 2 1
38 38 H 1.09006 * 109.47717 * 174.99599 * 4 2 1
39 39 H 1.09000 * 109.46593 * 299.99796 * 5 4 2
40 40 H 1.08998 * 109.46891 * 59.99794 * 5 4 2
41 41 H 1.09000 * 109.47459 * 299.99601 * 6 5 4
42 42 H 1.09006 * 109.47396 * 60.00284 * 6 5 4
43 43 H 0.96996 * 119.99210 * 0.02562 * 9 7 6
44 44 H 1.09002 * 111.01674 * 261.07573 * 12 10 9
45 45 H 1.09001 * 111.01695 * 24.96485 * 12 10 9
46 46 H 1.09001 * 113.81841 * 207.91351 * 14 13 12
47 47 H 1.09002 * 113.81648 * 339.47133 * 14 13 12
48 48 H 0.96994 * 119.99911 * 180.02562 * 19 18 16
49 49 H 1.08993 * 113.81597 * 221.79010 * 24 15 14
50 50 H 1.09003 * 113.81291 * 90.25200 * 24 15 14
51 51 H 1.07995 * 126.54549 * 359.91636 * 26 25 13
52 52 H 1.08006 * 125.97305 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 2.0400 -0.7213 -1.2491
5 6 1.6353 -2.1955 -1.1878
6 6 2.1448 -2.9166 -2.4373
7 6 1.7467 -4.3688 -2.3766
8 8 1.1169 -4.7858 -1.4277
9 7 2.0895 -5.2040 -3.3774
10 6 1.7019 -6.6156 -3.3186
11 1 0.7325 -6.7238 -2.8322
12 6 1.6653 -7.2262 -4.7399
13 6 2.2024 -8.6421 -4.4764
14 6 1.1504 -9.7532 -4.5047
15 7 1.5216 -9.9202 -5.9251
16 6 0.8853 -10.4209 -7.0294
17 1 1.3890 -10.4309 -7.9847
18 6 -0.4070 -10.9160 -6.9210
19 7 -1.0209 -10.9037 -5.7568
20 14 -1.2753 -11.5984 -8.4275
21 1 -0.4981 -12.7406 -8.9719
22 1 -2.6350 -12.0600 -8.0486
23 1 -1.3835 -10.5364 -9.4599
24 6 2.8536 -9.3302 -5.6779
25 7 3.0162 -8.5639 -3.2649
26 6 3.9710 -9.2468 -2.5533
27 6 4.2585 -8.5028 -1.4700
28 7 3.5034 -7.3970 -1.5137
29 6 2.7543 -7.4255 -2.5862
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3634 0.5139 0.8900
33 1 1.8934 -0.5137 0.8900
34 1 1.6767 1.9563 0.8899
35 1 3.1300 1.4425 0.0005
36 1 1.6767 1.9564 -0.8900
37 1 1.6055 -0.2618 -2.1369
38 1 3.1264 -0.6443 -1.2951
39 1 2.0699 -2.6549 -0.3001
40 1 0.5490 -2.2724 -1.1420
41 1 1.7099 -2.4571 -3.3248
42 1 3.2312 -2.8398 -2.4836
43 1 2.5928 -4.8704 -4.1364
44 1 0.6463 -7.2578 -5.1257
45 1 2.3213 -6.6794 -5.4173
46 1 1.3998 -10.6115 -3.8808
47 1 0.1308 -9.3979 -4.3551
48 1 -1.9238 -11.2500 -5.6809
49 1 3.1808 -8.6408 -6.4560
50 1 3.6153 -10.0613 -5.4068
51 1 4.4074 -10.1999 -2.8131
52 1 4.9724 -8.7536 -0.6994
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001101644203.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:44:51
Heat of formation + Delta-G solvation = 53.145491 kcal
Electronic energy + Delta-G solvation = -30473.580732 eV
Core-core repulsion = 26474.757176 eV
Total energy + Delta-G solvation = -3998.823557 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.28 seconds
Orbital eigenvalues (eV)
-43.61388 -40.69645 -40.10905 -37.88476 -36.77041 -34.90665 -33.82303 -33.45227
-31.84665 -29.68520 -29.11710 -28.09297 -27.91572 -27.01956 -25.82646 -23.82285
-23.14734 -22.66689 -21.38296 -21.05791 -20.79439 -20.10518 -18.89863 -18.21389
-17.48391 -17.36911 -16.84652 -16.62569 -16.13784 -15.84462 -15.78982 -15.40278
-15.31193 -15.05998 -14.88438 -14.74398 -14.55763 -14.26612 -14.15421 -13.85218
-13.60279 -13.28734 -13.21863 -13.02443 -12.91384 -12.83152 -12.66884 -12.63681
-12.50523 -12.44919 -12.15133 -11.98882 -11.83292 -11.66407 -11.50263 -11.40112
-11.26194 -10.96745 -10.89277 -10.80543 -10.45406 -10.28877 -9.34305 -9.09393
-7.97662 -5.34231 1.02983 1.46781 1.49062 1.55731 1.63232 1.76965
2.01955 2.34247 2.45240 2.84973 3.07489 3.27490 3.36759 3.48447
3.59697 3.82951 3.88329 4.03690 4.04892 4.12383 4.20170 4.23253
4.30701 4.43581 4.54783 4.58192 4.66042 4.69436 4.71590 4.74881
4.77833 4.80901 4.83911 4.88797 4.94956 5.03199 5.05066 5.08199
5.11005 5.14911 5.28746 5.33444 5.34705 5.39484 5.45115 5.46609
5.58491 5.61615 5.77261 5.90690 6.11402 6.57344 6.80759 7.17046
7.33617 7.51573 8.38284 9.18707
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.014055 B = 0.002242 C = 0.002026
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1991.722951 B =12484.804634 C =13819.548295
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.102 4.102
3 C -0.144 4.144
4 C -0.107 4.107
5 C -0.104 4.104
6 C -0.128 4.128
7 C 0.510 3.490
8 O -0.580 6.580
9 N -0.705 5.705
10 C 0.235 3.765
11 H 0.091 0.909
12 C -0.081 4.081
13 C 0.123 3.877
14 C 0.168 3.832
15 N -0.622 5.622
16 C -0.234 4.234
17 H 0.095 0.905
18 C -0.061 4.061
19 N -0.953 5.953
20 Si 0.980 3.020
21 H -0.279 1.279
22 H -0.299 1.299
23 H -0.269 1.269
24 C 0.131 3.869
25 N -0.458 5.458
26 C -0.033 4.033
27 C -0.040 4.040
28 N -0.504 5.504
29 C 0.157 3.843
30 H 0.045 0.955
31 H 0.060 0.940
32 H 0.053 0.947
33 H 0.058 0.942
34 H 0.053 0.947
35 H 0.058 0.942
36 H 0.059 0.941
37 H 0.075 0.925
38 H 0.072 0.928
39 H 0.045 0.955
40 H 0.056 0.944
41 H 0.124 0.876
42 H 0.114 0.886
43 H 0.420 0.580
44 H 0.106 0.894
45 H 0.127 0.873
46 H 0.009 0.991
47 H 0.058 0.942
48 H 0.250 0.750
49 H 0.086 0.914
50 H 0.047 0.953
51 H 0.190 0.810
52 H 0.197 0.803
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.109 20.811 3.976 23.476
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.120 4.120
3 C -0.201 4.201
4 C -0.144 4.144
5 C -0.142 4.142
6 C -0.168 4.168
7 C 0.299 3.701
8 O -0.458 6.458
9 N -0.358 5.358
10 C 0.127 3.873
11 H 0.109 0.891
12 C -0.120 4.120
13 C 0.038 3.962
14 C 0.041 3.959
15 N -0.349 5.349
16 C -0.362 4.362
17 H 0.112 0.888
18 C -0.254 4.254
19 N -0.601 5.601
20 Si 0.808 3.192
21 H -0.205 1.205
22 H -0.226 1.226
23 H -0.195 1.195
24 C 0.005 3.995
25 N -0.141 5.141
26 C -0.166 4.166
27 C -0.188 4.188
28 N -0.223 5.223
29 C -0.107 4.107
30 H 0.064 0.936
31 H 0.079 0.921
32 H 0.072 0.928
33 H 0.077 0.923
34 H 0.072 0.928
35 H 0.077 0.923
36 H 0.079 0.921
37 H 0.094 0.906
38 H 0.091 0.909
39 H 0.064 0.936
40 H 0.075 0.925
41 H 0.142 0.858
42 H 0.132 0.868
43 H 0.258 0.742
44 H 0.124 0.876
45 H 0.145 0.855
46 H 0.027 0.973
47 H 0.076 0.924
48 H 0.059 0.941
49 H 0.104 0.896
50 H 0.065 0.935
51 H 0.207 0.793
52 H 0.214 0.786
Dipole moment (debyes) X Y Z Total
from point charges 9.421 20.832 4.871 23.377
hybrid contribution -0.526 -2.047 -0.940 2.313
sum 8.895 18.785 3.931 21.153
Atomic orbital electron populations
1.21899 0.95562 1.01369 1.01921 1.21139 0.95814 0.96740 0.98339
1.21814 1.01120 0.95197 1.01993 1.21616 1.01417 0.93162 0.98214
1.21352 1.00979 0.95437 0.96407 1.21728 1.04500 0.88497 1.02036
1.21585 0.77756 0.89859 0.80946 1.90716 1.41589 1.79144 1.34396
1.45800 1.58308 1.06911 1.24805 1.19718 0.93210 0.80580 0.93838
0.89142 1.22575 1.04874 0.90123 0.94412 1.23363 0.92010 0.98091
0.82759 1.22303 0.96359 0.91869 0.85347 1.46008 1.11896 1.72653
1.04306 1.19344 0.95962 1.33461 0.87423 0.88760 1.25650 0.98045
1.01978 0.99760 1.69975 1.13429 1.52116 1.24568 0.85130 0.76946
0.78485 0.78630 1.20503 1.22554 1.19488 1.22837 0.88771 0.94542
0.93327 1.46582 1.29308 1.18281 1.19952 1.22833 0.96467 1.01702
0.95578 1.22750 1.04011 0.91989 1.00078 1.69785 1.09413 1.24471
1.18647 1.24928 1.02040 0.91239 0.92483 0.93558 0.92099 0.92774
0.92315 0.92773 0.92317 0.92144 0.90585 0.90919 0.93626 0.92546
0.85801 0.86765 0.74156 0.87583 0.85531 0.97278 0.92409 0.94068
0.89595 0.93528 0.79302 0.78602
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.20 8.95 71.98 0.64 -1.55 16
2 C -0.10 -1.41 2.92 -10.79 -0.03 -1.44 16
3 C -0.14 -1.57 9.19 71.98 0.66 -0.91 16
4 C -0.11 -1.36 4.68 30.59 0.14 -1.21 16
5 C -0.10 -1.90 4.26 30.59 0.13 -1.77 16
6 C -0.13 -2.00 5.70 29.85 0.17 -1.83 16
7 C 0.51 13.19 7.83 87.66 0.69 13.87 16
8 O -0.58 -21.32 15.66 -3.05 -0.05 -21.37 16
9 N -0.70 -16.16 5.15 -441.82 -2.27 -18.44 16
10 C 0.24 7.11 3.25 45.14 0.15 7.26 16
11 H 0.09 3.23 7.61 -2.39 -0.02 3.21 16
12 C -0.08 -2.28 6.18 31.43 0.19 -2.09 16
13 C 0.12 4.26 1.56 5.68 0.01 4.27 16
14 C 0.17 7.66 6.94 86.15 0.60 8.25 16
15 N -0.62 -28.89 3.69 -731.80 -2.70 -31.59 16
16 C -0.23 -11.99 10.70 84.03 0.90 -11.09 16
17 H 0.09 4.52 7.83 -2.91 -0.02 4.49 16
18 C -0.06 -3.25 5.50 84.86 0.47 -2.78 16
19 N -0.95 -55.02 11.39 21.65 0.25 -54.78 16
20 Si 0.98 43.10 29.55 68.60 2.03 45.13 16
21 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16
22 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16
23 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16
24 C 0.13 4.62 8.46 86.14 0.73 5.35 16
25 N -0.46 -15.54 3.37 -481.08 -1.62 -17.16 16
26 C -0.03 -1.02 12.03 82.99 1.00 -0.02 16
27 C -0.04 -1.26 11.86 83.52 0.99 -0.27 16
28 N -0.50 -18.74 11.25 -187.11 -2.11 -20.84 16
29 C 0.16 5.52 8.23 138.31 1.14 6.66 16
30 H 0.05 0.81 6.57 -2.39 -0.02 0.79 16
31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16
32 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16
33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16
34 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16
35 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16
36 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16
37 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16
38 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16
39 H 0.04 1.05 8.10 -2.39 -0.02 1.03 16
40 H 0.06 1.21 6.52 -2.39 -0.02 1.20 16
41 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16
42 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16
43 H 0.42 6.21 8.40 -92.71 -0.78 5.43 16
44 H 0.11 3.27 7.92 -2.39 -0.02 3.25 16
45 H 0.13 2.60 7.78 -2.39 -0.02 2.59 16
46 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16
47 H 0.06 2.96 7.08 -2.39 -0.02 2.94 16
48 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16
49 H 0.09 2.59 8.09 -2.39 -0.02 2.57 16
50 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16
51 H 0.19 4.77 8.06 -2.91 -0.02 4.74 16
52 H 0.20 4.71 8.06 -2.91 -0.02 4.69 16
Total: -1.00 -74.52 417.67 2.22 -72.30
By element:
Atomic # 1 Polarization: 25.94 SS G_CDS: 0.13 Total: 26.07 kcal
Atomic # 6 Polarization: 12.11 SS G_CDS: 8.57 Total: 20.68 kcal
Atomic # 7 Polarization: -134.35 SS G_CDS: -8.46 Total: -142.81 kcal
Atomic # 8 Polarization: -21.32 SS G_CDS: -0.05 Total: -21.37 kcal
Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal
Total: -74.52 2.22 -72.30 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001101644203.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 125.442 kcal
(2) G-P(sol) polarization free energy of solvation -74.519 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.923 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.297 kcal
(6) G-S(sol) free energy of system = (1) + (5) 53.145 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.28 seconds