Wall clock time and date at job start Wed Apr 1 2020 06:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 5 5 C 1.53002 * 109.47278 * 295.00291 * 4 2 1 6 6 C 1.52997 * 109.47192 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47173 * 179.97438 * 6 5 4 8 8 O 1.21287 * 119.99913 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00428 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00036 * 180.02562 * 9 7 6 11 11 H 1.08997 * 110.41597 * 34.30002 * 10 9 7 12 12 C 1.54739 * 110.46363 * 156.79025 * 10 9 7 13 13 C 1.53712 * 101.40427 * 142.93798 * 12 10 9 14 14 C 1.53038 * 115.17691 * 105.40262 * 13 12 10 15 15 N 1.47761 * 85.81968 * 93.69230 * 14 13 12 16 16 C 1.36933 * 134.41143 * 204.00238 * 15 14 13 17 17 H 1.07999 * 119.99845 * 179.97438 * 16 15 14 18 18 C 1.38815 * 120.00223 * 359.95406 * 16 15 14 19 19 N 1.31622 * 119.99941 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00184 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47327 * 59.99814 * 20 18 16 22 22 H 1.48502 * 109.47164 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47103 * 300.00000 * 20 18 16 24 24 C 1.47758 * 91.17398 * 23.96907 * 15 14 13 25 25 N 1.46165 * 106.70366 * 335.23149 * 13 12 10 26 26 C 1.37266 * 142.21995 * 196.36438 * 25 13 12 27 27 C 1.34527 * 106.91081 * 179.97438 * 26 25 13 28 28 N 1.33975 * 108.04966 * 0.02562 * 27 26 25 29 29 C 1.30854 * 109.35037 * 0.03381 * 28 27 26 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 34 34 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 35 35 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 37 37 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 38 38 H 1.09006 * 109.47717 * 174.99599 * 4 2 1 39 39 H 1.09000 * 109.46593 * 299.99796 * 5 4 2 40 40 H 1.08998 * 109.46891 * 59.99794 * 5 4 2 41 41 H 1.09000 * 109.47459 * 299.99601 * 6 5 4 42 42 H 1.09006 * 109.47396 * 60.00284 * 6 5 4 43 43 H 0.96996 * 119.99210 * 0.02562 * 9 7 6 44 44 H 1.09002 * 111.01674 * 261.07573 * 12 10 9 45 45 H 1.09001 * 111.01695 * 24.96485 * 12 10 9 46 46 H 1.09001 * 113.81841 * 207.91351 * 14 13 12 47 47 H 1.09002 * 113.81648 * 339.47133 * 14 13 12 48 48 H 0.96994 * 119.99911 * 180.02562 * 19 18 16 49 49 H 1.08993 * 113.81597 * 221.79010 * 24 15 14 50 50 H 1.09003 * 113.81291 * 90.25200 * 24 15 14 51 51 H 1.07995 * 126.54549 * 359.91636 * 26 25 13 52 52 H 1.08006 * 125.97305 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6353 -2.1955 -1.1878 6 6 2.1448 -2.9166 -2.4373 7 6 1.7467 -4.3688 -2.3766 8 8 1.1169 -4.7858 -1.4277 9 7 2.0895 -5.2040 -3.3774 10 6 1.7019 -6.6156 -3.3186 11 1 0.7325 -6.7238 -2.8322 12 6 1.6653 -7.2262 -4.7399 13 6 2.2024 -8.6421 -4.4764 14 6 1.1504 -9.7532 -4.5047 15 7 1.5216 -9.9202 -5.9251 16 6 0.8853 -10.4209 -7.0294 17 1 1.3890 -10.4309 -7.9847 18 6 -0.4070 -10.9160 -6.9210 19 7 -1.0209 -10.9037 -5.7568 20 14 -1.2753 -11.5984 -8.4275 21 1 -0.4981 -12.7406 -8.9719 22 1 -2.6350 -12.0600 -8.0486 23 1 -1.3835 -10.5364 -9.4599 24 6 2.8536 -9.3302 -5.6779 25 7 3.0162 -8.5639 -3.2649 26 6 3.9710 -9.2468 -2.5533 27 6 4.2585 -8.5028 -1.4700 28 7 3.5034 -7.3970 -1.5137 29 6 2.7543 -7.4255 -2.5862 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9564 -0.8900 37 1 1.6055 -0.2618 -2.1369 38 1 3.1264 -0.6443 -1.2951 39 1 2.0699 -2.6549 -0.3001 40 1 0.5490 -2.2724 -1.1420 41 1 1.7099 -2.4571 -3.3248 42 1 3.2312 -2.8398 -2.4836 43 1 2.5928 -4.8704 -4.1364 44 1 0.6463 -7.2578 -5.1257 45 1 2.3213 -6.6794 -5.4173 46 1 1.3998 -10.6115 -3.8808 47 1 0.1308 -9.3979 -4.3551 48 1 -1.9238 -11.2500 -5.6809 49 1 3.1808 -8.6408 -6.4560 50 1 3.6153 -10.0613 -5.4068 51 1 4.4074 -10.1999 -2.8131 52 1 4.9724 -8.7536 -0.6994 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101644203.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:44:51 Heat of formation + Delta-G solvation = 53.145491 kcal Electronic energy + Delta-G solvation = -30473.580732 eV Core-core repulsion = 26474.757176 eV Total energy + Delta-G solvation = -3998.823557 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.61388 -40.69645 -40.10905 -37.88476 -36.77041 -34.90665 -33.82303 -33.45227 -31.84665 -29.68520 -29.11710 -28.09297 -27.91572 -27.01956 -25.82646 -23.82285 -23.14734 -22.66689 -21.38296 -21.05791 -20.79439 -20.10518 -18.89863 -18.21389 -17.48391 -17.36911 -16.84652 -16.62569 -16.13784 -15.84462 -15.78982 -15.40278 -15.31193 -15.05998 -14.88438 -14.74398 -14.55763 -14.26612 -14.15421 -13.85218 -13.60279 -13.28734 -13.21863 -13.02443 -12.91384 -12.83152 -12.66884 -12.63681 -12.50523 -12.44919 -12.15133 -11.98882 -11.83292 -11.66407 -11.50263 -11.40112 -11.26194 -10.96745 -10.89277 -10.80543 -10.45406 -10.28877 -9.34305 -9.09393 -7.97662 -5.34231 1.02983 1.46781 1.49062 1.55731 1.63232 1.76965 2.01955 2.34247 2.45240 2.84973 3.07489 3.27490 3.36759 3.48447 3.59697 3.82951 3.88329 4.03690 4.04892 4.12383 4.20170 4.23253 4.30701 4.43581 4.54783 4.58192 4.66042 4.69436 4.71590 4.74881 4.77833 4.80901 4.83911 4.88797 4.94956 5.03199 5.05066 5.08199 5.11005 5.14911 5.28746 5.33444 5.34705 5.39484 5.45115 5.46609 5.58491 5.61615 5.77261 5.90690 6.11402 6.57344 6.80759 7.17046 7.33617 7.51573 8.38284 9.18707 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014055 B = 0.002242 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.722951 B =12484.804634 C =13819.548295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.102 4.102 3 C -0.144 4.144 4 C -0.107 4.107 5 C -0.104 4.104 6 C -0.128 4.128 7 C 0.510 3.490 8 O -0.580 6.580 9 N -0.705 5.705 10 C 0.235 3.765 11 H 0.091 0.909 12 C -0.081 4.081 13 C 0.123 3.877 14 C 0.168 3.832 15 N -0.622 5.622 16 C -0.234 4.234 17 H 0.095 0.905 18 C -0.061 4.061 19 N -0.953 5.953 20 Si 0.980 3.020 21 H -0.279 1.279 22 H -0.299 1.299 23 H -0.269 1.269 24 C 0.131 3.869 25 N -0.458 5.458 26 C -0.033 4.033 27 C -0.040 4.040 28 N -0.504 5.504 29 C 0.157 3.843 30 H 0.045 0.955 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.045 0.955 40 H 0.056 0.944 41 H 0.124 0.876 42 H 0.114 0.886 43 H 0.420 0.580 44 H 0.106 0.894 45 H 0.127 0.873 46 H 0.009 0.991 47 H 0.058 0.942 48 H 0.250 0.750 49 H 0.086 0.914 50 H 0.047 0.953 51 H 0.190 0.810 52 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.109 20.811 3.976 23.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.120 4.120 3 C -0.201 4.201 4 C -0.144 4.144 5 C -0.142 4.142 6 C -0.168 4.168 7 C 0.299 3.701 8 O -0.458 6.458 9 N -0.358 5.358 10 C 0.127 3.873 11 H 0.109 0.891 12 C -0.120 4.120 13 C 0.038 3.962 14 C 0.041 3.959 15 N -0.349 5.349 16 C -0.362 4.362 17 H 0.112 0.888 18 C -0.254 4.254 19 N -0.601 5.601 20 Si 0.808 3.192 21 H -0.205 1.205 22 H -0.226 1.226 23 H -0.195 1.195 24 C 0.005 3.995 25 N -0.141 5.141 26 C -0.166 4.166 27 C -0.188 4.188 28 N -0.223 5.223 29 C -0.107 4.107 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.142 0.858 42 H 0.132 0.868 43 H 0.258 0.742 44 H 0.124 0.876 45 H 0.145 0.855 46 H 0.027 0.973 47 H 0.076 0.924 48 H 0.059 0.941 49 H 0.104 0.896 50 H 0.065 0.935 51 H 0.207 0.793 52 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 9.421 20.832 4.871 23.377 hybrid contribution -0.526 -2.047 -0.940 2.313 sum 8.895 18.785 3.931 21.153 Atomic orbital electron populations 1.21899 0.95562 1.01369 1.01921 1.21139 0.95814 0.96740 0.98339 1.21814 1.01120 0.95197 1.01993 1.21616 1.01417 0.93162 0.98214 1.21352 1.00979 0.95437 0.96407 1.21728 1.04500 0.88497 1.02036 1.21585 0.77756 0.89859 0.80946 1.90716 1.41589 1.79144 1.34396 1.45800 1.58308 1.06911 1.24805 1.19718 0.93210 0.80580 0.93838 0.89142 1.22575 1.04874 0.90123 0.94412 1.23363 0.92010 0.98091 0.82759 1.22303 0.96359 0.91869 0.85347 1.46008 1.11896 1.72653 1.04306 1.19344 0.95962 1.33461 0.87423 0.88760 1.25650 0.98045 1.01978 0.99760 1.69975 1.13429 1.52116 1.24568 0.85130 0.76946 0.78485 0.78630 1.20503 1.22554 1.19488 1.22837 0.88771 0.94542 0.93327 1.46582 1.29308 1.18281 1.19952 1.22833 0.96467 1.01702 0.95578 1.22750 1.04011 0.91989 1.00078 1.69785 1.09413 1.24471 1.18647 1.24928 1.02040 0.91239 0.92483 0.93558 0.92099 0.92774 0.92315 0.92773 0.92317 0.92144 0.90585 0.90919 0.93626 0.92546 0.85801 0.86765 0.74156 0.87583 0.85531 0.97278 0.92409 0.94068 0.89595 0.93528 0.79302 0.78602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 8.95 71.98 0.64 -1.55 16 2 C -0.10 -1.41 2.92 -10.79 -0.03 -1.44 16 3 C -0.14 -1.57 9.19 71.98 0.66 -0.91 16 4 C -0.11 -1.36 4.68 30.59 0.14 -1.21 16 5 C -0.10 -1.90 4.26 30.59 0.13 -1.77 16 6 C -0.13 -2.00 5.70 29.85 0.17 -1.83 16 7 C 0.51 13.19 7.83 87.66 0.69 13.87 16 8 O -0.58 -21.32 15.66 -3.05 -0.05 -21.37 16 9 N -0.70 -16.16 5.15 -441.82 -2.27 -18.44 16 10 C 0.24 7.11 3.25 45.14 0.15 7.26 16 11 H 0.09 3.23 7.61 -2.39 -0.02 3.21 16 12 C -0.08 -2.28 6.18 31.43 0.19 -2.09 16 13 C 0.12 4.26 1.56 5.68 0.01 4.27 16 14 C 0.17 7.66 6.94 86.15 0.60 8.25 16 15 N -0.62 -28.89 3.69 -731.80 -2.70 -31.59 16 16 C -0.23 -11.99 10.70 84.03 0.90 -11.09 16 17 H 0.09 4.52 7.83 -2.91 -0.02 4.49 16 18 C -0.06 -3.25 5.50 84.86 0.47 -2.78 16 19 N -0.95 -55.02 11.39 21.65 0.25 -54.78 16 20 Si 0.98 43.10 29.55 68.60 2.03 45.13 16 21 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 24 C 0.13 4.62 8.46 86.14 0.73 5.35 16 25 N -0.46 -15.54 3.37 -481.08 -1.62 -17.16 16 26 C -0.03 -1.02 12.03 82.99 1.00 -0.02 16 27 C -0.04 -1.26 11.86 83.52 0.99 -0.27 16 28 N -0.50 -18.74 11.25 -187.11 -2.11 -20.84 16 29 C 0.16 5.52 8.23 138.31 1.14 6.66 16 30 H 0.05 0.81 6.57 -2.39 -0.02 0.79 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 36 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 39 H 0.04 1.05 8.10 -2.39 -0.02 1.03 16 40 H 0.06 1.21 6.52 -2.39 -0.02 1.20 16 41 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 43 H 0.42 6.21 8.40 -92.71 -0.78 5.43 16 44 H 0.11 3.27 7.92 -2.39 -0.02 3.25 16 45 H 0.13 2.60 7.78 -2.39 -0.02 2.59 16 46 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 47 H 0.06 2.96 7.08 -2.39 -0.02 2.94 16 48 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 49 H 0.09 2.59 8.09 -2.39 -0.02 2.57 16 50 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 51 H 0.19 4.77 8.06 -2.91 -0.02 4.74 16 52 H 0.20 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -74.52 417.67 2.22 -72.30 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: 0.13 Total: 26.07 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 8.57 Total: 20.68 kcal Atomic # 7 Polarization: -134.35 SS G_CDS: -8.46 Total: -142.81 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.05 Total: -21.37 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -74.52 2.22 -72.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101644203.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.442 kcal (2) G-P(sol) polarization free energy of solvation -74.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds