Wall clock time and date at job start Wed Apr 1 2020 06:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47273 * 2 1 4 4 C 1.53008 * 109.46954 * 64.99776 * 3 2 1 5 5 C 1.53001 * 109.46986 * 185.32155 * 4 3 2 6 6 C 1.52998 * 109.47123 * 184.99647 * 3 2 1 7 7 C 1.50696 * 109.47129 * 67.18709 * 6 3 2 8 8 O 1.21290 * 119.99911 * 356.30925 * 7 6 3 9 9 N 1.34771 * 120.00345 * 176.31298 * 7 6 3 10 10 C 1.46508 * 120.00393 * 179.97438 * 9 7 6 11 11 H 1.08998 * 110.41255 * 323.97330 * 10 9 7 12 12 C 1.54756 * 110.45484 * 201.33961 * 10 9 7 13 13 C 1.53377 * 101.46836 * 217.13656 * 12 10 9 14 14 C 1.52449 * 115.89141 * 252.95281 * 13 12 10 15 15 N 1.47264 * 87.72441 * 218.51987 * 14 13 12 16 16 C 1.36933 * 135.94554 * 206.22049 * 15 14 13 17 17 H 1.08007 * 119.99755 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00464 * 179.97438 * 16 15 14 19 19 N 1.31623 * 119.99801 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00217 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47189 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47432 * 300.00412 * 20 18 16 23 23 H 1.48510 * 109.47102 * 60.00444 * 20 18 16 24 24 C 1.47262 * 88.11363 * 26.48336 * 15 14 13 25 25 N 1.46034 * 106.82434 * 24.68687 * 13 12 10 26 26 C 1.37283 * 142.29213 * 163.78644 * 25 13 12 27 27 C 1.34515 * 106.92144 * 180.18682 * 26 25 13 28 28 N 1.33974 * 108.05181 * 359.96022 * 27 26 25 29 29 C 1.30849 * 109.35460 * 359.93478 * 28 27 26 30 30 H 1.08998 * 109.47030 * 299.99928 * 1 2 3 31 31 H 1.09000 * 109.46698 * 59.99720 * 1 2 3 32 32 H 1.09003 * 109.46893 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47030 * 240.00072 * 2 1 3 34 34 H 1.09000 * 109.47151 * 119.99998 * 2 1 3 35 35 H 1.08997 * 109.47279 * 305.00123 * 3 2 1 36 36 H 1.08999 * 109.47084 * 305.31974 * 4 3 2 37 37 H 1.08997 * 109.46790 * 65.31986 * 4 3 2 38 38 H 1.09003 * 109.47006 * 54.74676 * 5 4 3 39 39 H 1.09002 * 109.46884 * 174.74918 * 5 4 3 40 40 H 1.09000 * 109.47105 * 294.74713 * 5 4 3 41 41 H 1.09000 * 109.47275 * 307.18374 * 6 3 2 42 42 H 1.09008 * 109.47057 * 187.18049 * 6 3 2 43 43 H 0.97002 * 119.99766 * 359.97438 * 9 7 6 44 44 H 1.09005 * 111.01911 * 99.09165 * 12 10 9 45 45 H 1.09003 * 111.03408 * 335.18928 * 12 10 9 46 46 H 1.08992 * 113.50976 * 103.80923 * 14 13 12 47 47 H 1.08996 * 113.56835 * 333.23875 * 14 13 12 48 48 H 0.97000 * 119.99918 * 180.02562 * 19 18 16 49 49 H 1.08992 * 113.51172 * 88.23515 * 24 15 14 50 50 H 1.09006 * 113.50950 * 218.81088 * 24 15 14 51 51 H 1.08002 * 126.53773 * 0.16511 * 26 25 13 52 52 H 1.08004 * 125.96869 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6352 2.1266 1.3074 5 6 2.0282 3.6042 1.2527 6 6 3.5649 1.4443 -0.1256 7 6 3.9573 0.9323 -1.4875 8 8 3.1057 0.5359 -2.2549 9 7 5.2544 0.9146 -1.8529 10 6 5.6360 0.4163 -3.1767 11 1 4.9968 -0.4172 -3.4679 12 6 7.1237 -0.0097 -3.1861 13 6 7.5592 0.4342 -4.5881 14 6 7.7805 -0.6831 -5.6014 15 7 8.9327 0.0826 -6.1061 16 6 9.6020 0.1834 -7.2965 17 1 9.2858 -0.4048 -8.1453 18 6 10.6863 1.0424 -7.4126 19 7 11.0714 1.7596 -6.3783 20 14 11.5989 1.1804 -9.0366 21 1 12.7090 2.1571 -8.8992 22 1 12.1512 -0.1470 -9.4084 23 1 10.6622 1.6403 -10.0933 24 6 9.0545 0.6876 -4.7691 25 7 6.6575 1.5103 -4.9899 26 6 6.5220 2.5322 -5.8966 27 6 5.3503 3.1376 -5.6320 28 7 4.7821 2.5073 -4.5953 29 6 5.5579 1.5287 -4.2047 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6055 1.9815 -0.8418 36 1 0.5570 2.0421 1.4429 37 1 2.1451 1.6456 2.1421 38 1 1.5930 4.0633 0.3650 39 1 1.6575 4.1119 2.1432 40 1 3.1140 3.6902 1.2111 41 1 3.9935 0.8001 0.6421 42 1 3.9388 2.4602 0.0021 43 1 5.9354 1.2319 -1.2393 44 1 7.2222 -1.0890 -3.0694 45 1 7.6867 0.5182 -2.4162 46 1 6.9717 -0.7797 -6.3256 47 1 8.0563 -1.6348 -5.1474 48 1 11.8288 2.3601 -6.4595 49 1 9.6789 0.1114 -4.0864 50 1 9.3181 1.7450 -4.7926 51 1 7.2227 2.7993 -6.6739 52 1 4.9394 3.9838 -6.1627 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101649323.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:45:12 Heat of formation + Delta-G solvation = 82.269060 kcal Electronic energy + Delta-G solvation = -31215.382684 eV Core-core repulsion = 27217.822021 eV Total energy + Delta-G solvation = -3997.560664 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.18439 -39.85758 -38.59107 -37.10956 -35.45373 -33.34017 -31.95469 -31.80345 -30.86166 -29.62986 -28.30977 -27.28281 -25.43433 -25.13533 -24.11398 -22.76850 -21.92837 -21.31736 -20.97320 -19.82377 -19.74103 -18.70420 -17.32827 -16.94575 -16.32534 -15.68355 -15.36128 -15.11006 -14.81374 -14.72882 -14.49393 -14.28750 -14.02499 -13.90587 -13.66260 -13.60461 -13.36858 -13.23597 -12.99525 -12.62700 -12.49255 -12.15753 -12.10301 -12.04592 -11.93986 -11.55959 -11.50185 -11.44713 -11.29297 -10.96177 -10.87821 -10.69868 -10.57834 -10.54955 -10.21547 -10.15614 -9.70988 -9.63832 -9.45306 -9.14675 -9.03270 -8.87303 -7.87105 -7.15355 -5.96678 -3.31125 2.49338 2.72978 3.06483 3.28742 3.30832 3.34314 3.34821 3.68910 4.11537 4.28497 4.49854 4.55034 4.62126 4.66843 4.72576 4.83455 4.98119 5.06231 5.10477 5.20184 5.25508 5.32135 5.36941 5.37355 5.41980 5.51023 5.57897 5.62624 5.68615 5.72223 5.77014 5.77653 5.86694 5.88936 5.97592 6.02045 6.04337 6.13989 6.14096 6.21402 6.25343 6.32780 6.34642 6.46750 6.72162 6.88870 6.98194 7.24427 7.34355 7.48722 7.65090 7.75074 8.30590 8.63321 8.82613 9.49503 10.35226 11.20468 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023982 B = 0.002306 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.271539 B =12139.063574 C =12333.140464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.072 4.072 4 C -0.121 4.121 5 C -0.156 4.156 6 C -0.138 4.138 7 C 0.517 3.483 8 O -0.522 6.522 9 N -0.721 5.721 10 C 0.235 3.765 11 H 0.112 0.888 12 C -0.115 4.115 13 C 0.097 3.903 14 C 0.119 3.881 15 N -0.603 5.603 16 C -0.224 4.224 17 H 0.083 0.917 18 C -0.003 4.003 19 N -0.920 5.920 20 Si 0.916 3.084 21 H -0.288 1.288 22 H -0.284 1.284 23 H -0.282 1.282 24 C 0.161 3.839 25 N -0.428 5.428 26 C 0.007 3.993 27 C -0.050 4.050 28 N -0.468 5.468 29 C 0.154 3.846 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.401 0.599 44 H 0.106 0.894 45 H 0.094 0.906 46 H 0.049 0.951 47 H 0.055 0.945 48 H 0.257 0.743 49 H 0.047 0.953 50 H 0.081 0.919 51 H 0.171 0.829 52 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.548 -1.355 16.850 21.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.090 4.090 4 C -0.159 4.159 5 C -0.214 4.214 6 C -0.178 4.178 7 C 0.304 3.696 8 O -0.397 6.397 9 N -0.373 5.373 10 C 0.128 3.872 11 H 0.130 0.870 12 C -0.155 4.155 13 C 0.010 3.990 14 C -0.008 4.008 15 N -0.329 5.329 16 C -0.350 4.350 17 H 0.101 0.899 18 C -0.200 4.200 19 N -0.566 5.566 20 Si 0.745 3.255 21 H -0.214 1.214 22 H -0.210 1.210 23 H -0.209 1.209 24 C 0.034 3.966 25 N -0.110 5.110 26 C -0.127 4.127 27 C -0.198 4.198 28 N -0.187 5.187 29 C -0.110 4.110 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.235 0.765 44 H 0.125 0.875 45 H 0.112 0.888 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.067 0.933 49 H 0.065 0.935 50 H 0.099 0.901 51 H 0.189 0.811 52 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -14.444 -1.351 16.274 21.801 hybrid contribution 1.936 0.201 -1.166 2.269 sum -12.507 -1.150 15.108 19.647 Atomic orbital electron populations 1.21779 0.96218 1.01188 1.01528 1.21683 0.95842 0.96159 1.02548 1.20985 0.92822 0.97054 0.98179 1.21648 1.01488 0.95525 0.97224 1.21855 1.01529 0.96300 1.01683 1.21801 0.98397 1.03030 0.94563 1.20682 0.82016 0.77793 0.89144 1.90701 1.49141 1.46193 1.53689 1.45989 1.08539 1.66542 1.16231 1.19860 0.96189 0.91624 0.79562 0.86991 1.22740 0.92984 1.03454 0.96280 1.22479 0.94799 0.88749 0.93000 1.22653 0.91797 0.93138 0.93256 1.45613 1.33544 1.46809 1.06929 1.18861 1.08970 1.21079 0.86132 0.89939 1.24802 0.98308 0.98960 0.97932 1.69784 1.28729 1.29009 1.29043 0.86147 0.79264 0.77540 0.82512 1.21406 1.20996 1.20872 1.22309 0.86412 1.01016 0.86842 1.45623 1.17564 1.22900 1.24869 1.22508 1.00995 0.91272 0.97964 1.22172 0.94475 1.03835 0.99310 1.69748 1.29438 1.06655 1.12854 1.24463 0.87291 1.00531 0.98678 0.93035 0.92682 0.93190 0.89950 0.92896 0.90162 0.91481 0.92109 0.92532 0.92969 0.92605 0.89033 0.88826 0.76468 0.87526 0.88771 0.93305 0.92727 0.93317 0.93547 0.90116 0.81133 0.81473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.67 37.16 0.36 -0.96 16 2 C -0.12 -1.19 5.20 -26.73 -0.14 -1.33 16 3 C -0.07 -0.66 1.49 -90.62 -0.14 -0.80 16 4 C -0.12 -0.88 5.27 -26.73 -0.14 -1.02 16 5 C -0.16 -1.12 9.55 37.16 0.36 -0.77 16 6 C -0.14 -1.20 5.06 -27.89 -0.14 -1.34 16 7 C 0.52 6.38 7.55 -10.99 -0.08 6.30 16 8 O -0.52 -8.50 13.71 5.55 0.08 -8.42 16 9 N -0.72 -8.16 5.16 -53.56 -0.28 -8.44 16 10 C 0.24 3.26 3.24 -67.68 -0.22 3.04 16 11 H 0.11 1.63 7.66 -51.93 -0.40 1.23 16 12 C -0.11 -1.41 6.24 -25.61 -0.16 -1.57 16 13 C 0.10 1.68 1.64 -133.39 -0.22 1.46 16 14 C 0.12 2.25 8.18 -7.91 -0.06 2.19 16 15 N -0.60 -14.39 3.79 -184.69 -0.70 -15.09 16 16 C -0.22 -5.95 10.74 -15.06 -0.16 -6.11 16 17 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 18 C 0.00 -0.08 5.50 -17.43 -0.10 -0.17 16 19 N -0.92 -25.84 11.51 55.49 0.64 -25.21 16 20 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.16 3.41 6.94 -7.76 -0.05 3.36 16 25 N -0.43 -8.13 3.42 -100.93 -0.34 -8.47 16 26 C 0.01 0.13 12.03 -16.43 -0.20 -0.06 16 27 C -0.05 -0.93 11.86 -17.93 -0.21 -1.14 16 28 N -0.47 -9.29 11.25 -10.49 -0.12 -9.40 16 29 C 0.15 2.78 8.22 -154.57 -1.27 1.51 16 30 H 0.05 0.39 6.46 -51.93 -0.34 0.05 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 1.00 5.95 -51.93 -0.31 0.69 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.93 7.93 -51.93 -0.41 0.52 16 36 H 0.07 0.48 6.33 -51.93 -0.33 0.15 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.05 0.38 6.68 -51.93 -0.35 0.03 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 0.73 6.38 -51.92 -0.33 0.40 16 43 H 0.40 3.36 8.38 -40.82 -0.34 3.01 16 44 H 0.11 1.04 7.87 -51.93 -0.41 0.63 16 45 H 0.09 0.99 7.80 -51.93 -0.40 0.59 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.06 0.92 7.98 -51.93 -0.41 0.50 16 48 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 49 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 50 H 0.08 1.99 7.15 -51.93 -0.37 1.61 16 51 H 0.17 3.48 8.06 -52.49 -0.42 3.05 16 52 H 0.17 2.61 8.06 -52.48 -0.42 2.18 16 LS Contribution 410.21 15.07 6.18 6.18 Total: -1.00 -33.46 410.21 -10.74 -44.21 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -8.60 Total: 5.74 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -2.58 Total: 2.58 kcal Atomic # 7 Polarization: -65.81 SS G_CDS: -0.80 Total: -66.61 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.08 Total: -8.42 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.46 -10.74 -44.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101649323.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.475 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds