Wall clock time and date at job start Wed Apr 1 2020 06:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47273 * 2 1 4 4 C 1.53008 * 109.46954 * 64.99776 * 3 2 1 5 5 C 1.53001 * 109.46986 * 185.32155 * 4 3 2 6 6 C 1.52998 * 109.47123 * 184.99647 * 3 2 1 7 7 C 1.50696 * 109.47129 * 67.18709 * 6 3 2 8 8 O 1.21290 * 119.99911 * 356.30925 * 7 6 3 9 9 N 1.34771 * 120.00345 * 176.31298 * 7 6 3 10 10 C 1.46508 * 120.00393 * 179.97438 * 9 7 6 11 11 H 1.08998 * 110.41255 * 323.97330 * 10 9 7 12 12 C 1.54756 * 110.45484 * 201.33961 * 10 9 7 13 13 C 1.53377 * 101.46836 * 217.13656 * 12 10 9 14 14 C 1.52449 * 115.89141 * 252.95281 * 13 12 10 15 15 N 1.47264 * 87.72441 * 218.51987 * 14 13 12 16 16 C 1.36933 * 135.94554 * 206.22049 * 15 14 13 17 17 H 1.08007 * 119.99755 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00464 * 179.97438 * 16 15 14 19 19 N 1.31623 * 119.99801 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00217 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47189 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47432 * 300.00412 * 20 18 16 23 23 H 1.48510 * 109.47102 * 60.00444 * 20 18 16 24 24 C 1.47262 * 88.11363 * 26.48336 * 15 14 13 25 25 N 1.46034 * 106.82434 * 24.68687 * 13 12 10 26 26 C 1.37283 * 142.29213 * 163.78644 * 25 13 12 27 27 C 1.34515 * 106.92144 * 180.18682 * 26 25 13 28 28 N 1.33974 * 108.05181 * 359.96022 * 27 26 25 29 29 C 1.30849 * 109.35460 * 359.93478 * 28 27 26 30 30 H 1.08998 * 109.47030 * 299.99928 * 1 2 3 31 31 H 1.09000 * 109.46698 * 59.99720 * 1 2 3 32 32 H 1.09003 * 109.46893 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47030 * 240.00072 * 2 1 3 34 34 H 1.09000 * 109.47151 * 119.99998 * 2 1 3 35 35 H 1.08997 * 109.47279 * 305.00123 * 3 2 1 36 36 H 1.08999 * 109.47084 * 305.31974 * 4 3 2 37 37 H 1.08997 * 109.46790 * 65.31986 * 4 3 2 38 38 H 1.09003 * 109.47006 * 54.74676 * 5 4 3 39 39 H 1.09002 * 109.46884 * 174.74918 * 5 4 3 40 40 H 1.09000 * 109.47105 * 294.74713 * 5 4 3 41 41 H 1.09000 * 109.47275 * 307.18374 * 6 3 2 42 42 H 1.09008 * 109.47057 * 187.18049 * 6 3 2 43 43 H 0.97002 * 119.99766 * 359.97438 * 9 7 6 44 44 H 1.09005 * 111.01911 * 99.09165 * 12 10 9 45 45 H 1.09003 * 111.03408 * 335.18928 * 12 10 9 46 46 H 1.08992 * 113.50976 * 103.80923 * 14 13 12 47 47 H 1.08996 * 113.56835 * 333.23875 * 14 13 12 48 48 H 0.97000 * 119.99918 * 180.02562 * 19 18 16 49 49 H 1.08992 * 113.51172 * 88.23515 * 24 15 14 50 50 H 1.09006 * 113.50950 * 218.81088 * 24 15 14 51 51 H 1.08002 * 126.53773 * 0.16511 * 26 25 13 52 52 H 1.08004 * 125.96869 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6352 2.1266 1.3074 5 6 2.0282 3.6042 1.2527 6 6 3.5649 1.4443 -0.1256 7 6 3.9573 0.9323 -1.4875 8 8 3.1057 0.5359 -2.2549 9 7 5.2544 0.9146 -1.8529 10 6 5.6360 0.4163 -3.1767 11 1 4.9968 -0.4172 -3.4679 12 6 7.1237 -0.0097 -3.1861 13 6 7.5592 0.4342 -4.5881 14 6 7.7805 -0.6831 -5.6014 15 7 8.9327 0.0826 -6.1061 16 6 9.6020 0.1834 -7.2965 17 1 9.2858 -0.4048 -8.1453 18 6 10.6863 1.0424 -7.4126 19 7 11.0714 1.7596 -6.3783 20 14 11.5989 1.1804 -9.0366 21 1 12.7090 2.1571 -8.8992 22 1 12.1512 -0.1470 -9.4084 23 1 10.6622 1.6403 -10.0933 24 6 9.0545 0.6876 -4.7691 25 7 6.6575 1.5103 -4.9899 26 6 6.5220 2.5322 -5.8966 27 6 5.3503 3.1376 -5.6320 28 7 4.7821 2.5073 -4.5953 29 6 5.5579 1.5287 -4.2047 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6055 1.9815 -0.8418 36 1 0.5570 2.0421 1.4429 37 1 2.1451 1.6456 2.1421 38 1 1.5930 4.0633 0.3650 39 1 1.6575 4.1119 2.1432 40 1 3.1140 3.6902 1.2111 41 1 3.9935 0.8001 0.6421 42 1 3.9388 2.4602 0.0021 43 1 5.9354 1.2319 -1.2393 44 1 7.2222 -1.0890 -3.0694 45 1 7.6867 0.5182 -2.4162 46 1 6.9717 -0.7797 -6.3256 47 1 8.0563 -1.6348 -5.1474 48 1 11.8288 2.3601 -6.4595 49 1 9.6789 0.1114 -4.0864 50 1 9.3181 1.7450 -4.7926 51 1 7.2227 2.7993 -6.6739 52 1 4.9394 3.9838 -6.1627 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101649323.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:45:11 Heat of formation + Delta-G solvation = 61.787612 kcal Electronic energy + Delta-G solvation = -31216.270827 eV Core-core repulsion = 27217.822021 eV Total energy + Delta-G solvation = -3998.448806 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.61266 -40.81647 -40.13813 -37.90883 -36.65028 -34.85688 -33.60511 -32.55687 -32.04598 -30.53868 -29.88299 -28.80795 -26.75837 -26.45268 -25.33008 -23.43200 -23.34375 -22.89912 -21.94486 -21.11916 -20.52563 -20.18491 -18.85465 -18.22252 -17.49190 -17.14411 -16.76613 -16.34234 -16.02814 -15.74076 -15.61873 -15.50798 -15.33885 -15.03099 -14.95166 -14.82811 -14.60409 -14.29808 -14.03507 -13.90906 -13.53800 -13.38631 -13.30336 -13.17142 -12.91904 -12.81246 -12.79140 -12.62581 -12.54348 -12.19609 -11.98946 -11.92194 -11.77932 -11.51116 -11.38241 -11.30092 -11.20760 -11.06965 -10.89326 -10.60242 -10.39395 -10.16852 -9.35238 -9.05463 -8.00105 -5.33579 1.05064 1.41854 1.43473 1.49780 1.69688 1.86460 2.03891 2.35340 2.42084 2.87883 3.18596 3.28205 3.29356 3.52784 3.74285 3.86213 3.94876 4.00457 4.08319 4.18571 4.26156 4.33967 4.47322 4.54263 4.58769 4.60654 4.64143 4.67770 4.69824 4.71949 4.73946 4.81484 4.84990 4.92890 5.02553 5.03976 5.05992 5.14900 5.19696 5.21300 5.33921 5.35266 5.36202 5.44869 5.50023 5.54630 5.64885 5.66883 5.79688 5.89149 6.19812 6.63834 6.80675 7.16298 7.41026 7.49644 8.44126 9.16381 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023982 B = 0.002306 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.271539 B =12139.063574 C =12333.140464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.070 4.070 4 C -0.115 4.115 5 C -0.158 4.158 6 C -0.131 4.131 7 C 0.512 3.488 8 O -0.566 6.566 9 N -0.709 5.709 10 C 0.239 3.761 11 H 0.110 0.890 12 C -0.097 4.097 13 C 0.111 3.889 14 C 0.120 3.880 15 N -0.637 5.637 16 C -0.230 4.230 17 H 0.080 0.920 18 C -0.057 4.057 19 N -0.947 5.947 20 Si 0.975 3.025 21 H -0.293 1.293 22 H -0.276 1.276 23 H -0.281 1.281 24 C 0.163 3.837 25 N -0.440 5.440 26 C -0.024 4.024 27 C -0.043 4.043 28 N -0.500 5.500 29 C 0.160 3.840 30 H 0.067 0.933 31 H 0.036 0.964 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.040 0.960 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.125 0.875 42 H 0.107 0.893 43 H 0.418 0.582 44 H 0.146 0.854 45 H 0.120 0.880 46 H 0.037 0.963 47 H 0.092 0.908 48 H 0.250 0.750 49 H 0.061 0.939 50 H 0.039 0.961 51 H 0.152 0.848 52 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.833 -2.608 19.649 24.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.089 4.089 4 C -0.152 4.152 5 C -0.215 4.215 6 C -0.170 4.170 7 C 0.301 3.699 8 O -0.444 6.444 9 N -0.362 5.362 10 C 0.131 3.869 11 H 0.127 0.873 12 C -0.136 4.136 13 C 0.024 3.976 14 C -0.006 4.006 15 N -0.363 5.363 16 C -0.358 4.358 17 H 0.098 0.902 18 C -0.251 4.251 19 N -0.595 5.595 20 Si 0.803 3.197 21 H -0.219 1.219 22 H -0.202 1.202 23 H -0.207 1.207 24 C 0.037 3.963 25 N -0.121 5.121 26 C -0.158 4.158 27 C -0.190 4.190 28 N -0.220 5.220 29 C -0.105 4.105 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.143 0.857 42 H 0.125 0.875 43 H 0.256 0.744 44 H 0.164 0.836 45 H 0.139 0.861 46 H 0.055 0.945 47 H 0.110 0.890 48 H 0.059 0.941 49 H 0.078 0.922 50 H 0.058 0.942 51 H 0.170 0.830 52 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -14.731 -2.614 19.100 24.262 hybrid contribution 1.929 0.582 -2.054 2.877 sum -12.802 -2.032 17.046 21.415 Atomic orbital electron populations 1.21776 0.96015 1.01438 1.01432 1.21637 0.96102 0.96261 1.02020 1.20934 0.93221 0.96621 0.98112 1.21599 1.01768 0.95386 0.96443 1.21866 1.01876 0.96273 1.01461 1.21850 0.97988 1.04227 0.92959 1.21381 0.81651 0.76802 0.90085 1.90697 1.50371 1.48088 1.55239 1.45873 1.08941 1.66061 1.15316 1.19894 0.97252 0.89953 0.79808 0.87258 1.22870 0.91451 1.06118 0.93124 1.22427 0.92232 0.87364 0.95545 1.22887 0.89645 0.94701 0.93378 1.45875 1.34692 1.48524 1.07193 1.19137 1.08739 1.20343 0.87578 0.90213 1.25523 0.99521 0.99240 1.00814 1.69950 1.29056 1.29902 1.30636 0.85209 0.77834 0.77462 0.79171 1.21910 1.20160 1.20677 1.22248 0.89374 0.98564 0.86154 1.45828 1.18344 1.23103 1.24868 1.22418 1.01529 0.92973 0.98870 1.22546 0.93781 1.03890 0.98816 1.69787 1.30398 1.08013 1.13759 1.25388 0.86154 1.00229 0.98687 0.91451 0.94444 0.92785 0.92738 0.90954 0.93472 0.91428 0.90229 0.94070 0.91938 0.91986 0.85732 0.87512 0.74395 0.83618 0.86150 0.94475 0.89014 0.94105 0.92176 0.94248 0.83019 0.79307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.67 71.98 0.70 -1.81 16 2 C -0.12 -2.17 5.20 30.60 0.16 -2.01 16 3 C -0.07 -1.18 1.49 -10.79 -0.02 -1.20 16 4 C -0.11 -1.37 5.27 30.60 0.16 -1.21 16 5 C -0.16 -1.92 9.55 71.98 0.69 -1.24 16 6 C -0.13 -1.89 5.06 29.85 0.15 -1.74 16 7 C 0.51 11.66 7.55 87.66 0.66 12.32 16 8 O -0.57 -18.20 13.71 -3.06 -0.04 -18.25 16 9 N -0.71 -13.98 5.16 -441.76 -2.28 -16.26 16 10 C 0.24 6.05 3.24 45.15 0.15 6.20 16 11 H 0.11 2.93 7.66 -2.39 -0.02 2.91 16 12 C -0.10 -2.01 6.24 31.32 0.20 -1.81 16 13 C 0.11 3.69 1.64 3.93 0.01 3.69 16 14 C 0.12 4.37 8.18 83.46 0.68 5.05 16 15 N -0.64 -30.49 3.79 -738.22 -2.79 -33.29 16 16 C -0.23 -12.44 10.74 84.03 0.90 -11.54 16 17 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 18 C -0.06 -3.14 5.50 84.86 0.47 -2.67 16 19 N -0.95 -54.72 11.51 21.65 0.25 -54.47 16 20 Si 0.98 44.70 29.55 68.60 2.03 46.73 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 C 0.16 6.87 6.94 83.55 0.58 7.45 16 25 N -0.44 -16.68 3.42 -473.24 -1.62 -18.30 16 26 C -0.02 -0.99 12.03 82.99 1.00 0.01 16 27 C -0.04 -1.62 11.86 83.51 0.99 -0.63 16 28 N -0.50 -19.85 11.25 -187.09 -2.11 -21.96 16 29 C 0.16 5.65 8.22 138.31 1.14 6.79 16 30 H 0.07 0.90 6.46 -2.39 -0.02 0.88 16 31 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.05 1.29 5.95 -2.39 -0.01 1.28 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.05 1.11 7.93 -2.39 -0.02 1.09 16 36 H 0.07 0.81 6.33 -2.39 -0.02 0.79 16 37 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.06 0.67 6.68 -2.39 -0.02 0.66 16 41 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.11 1.31 6.38 -2.38 -0.02 1.30 16 43 H 0.42 5.33 8.38 -92.71 -0.78 4.55 16 44 H 0.15 2.01 7.87 -2.38 -0.02 1.99 16 45 H 0.12 1.96 7.80 -2.39 -0.02 1.94 16 46 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.09 2.74 7.98 -2.39 -0.02 2.72 16 48 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 49 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 50 H 0.04 1.99 7.15 -2.38 -0.02 1.97 16 51 H 0.15 6.66 8.06 -2.91 -0.02 6.64 16 52 H 0.19 5.96 8.06 -2.91 -0.02 5.94 16 Total: -1.00 -77.07 410.21 2.19 -74.89 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.14 Total: 25.24 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 8.61 Total: 15.67 kcal Atomic # 7 Polarization: -135.73 SS G_CDS: -8.55 Total: -144.28 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.04 Total: -18.25 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -77.07 2.19 -74.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101649323.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.673 kcal (2) G-P(sol) polarization free energy of solvation -77.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds