Wall clock time and date at job start Wed Apr 1 2020 04:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47068 * 2 1 4 4 N 1.30503 * 125.65268 * 90.02276 * 3 2 1 5 5 C 1.34120 * 109.25776 * 180.02562 * 4 3 2 6 6 C 1.34668 * 108.02585 * 0.02562 * 5 4 3 7 7 N 1.35052 * 125.65229 * 269.72038 * 3 2 1 8 8 C 1.46496 * 126.39506 * 359.97438 * 7 3 2 9 9 H 1.09007 * 109.47349 * 359.97438 * 8 7 3 10 10 C 1.53002 * 109.47126 * 120.00134 * 8 7 3 11 11 C 1.53004 * 109.47244 * 240.00220 * 8 7 3 12 12 C 1.50699 * 109.47357 * 174.99870 * 11 8 7 13 13 O 1.21277 * 119.99848 * 0.02562 * 12 11 8 14 14 N 1.34771 * 120.00167 * 179.97438 * 12 11 8 15 15 C 1.46494 * 120.00200 * 180.02562 * 14 12 11 16 16 H 1.09003 * 110.56240 * 36.96705 * 15 14 12 17 17 C 1.54855 * 110.62916 * 160.04122 * 15 14 12 18 18 C 1.55852 * 103.44449 * 118.48689 * 17 15 14 19 19 H 1.09003 * 115.55908 * 159.56453 * 18 17 15 20 20 C 1.55845 * 105.06303 * 288.17546 * 18 17 15 21 21 C 1.54849 * 103.44361 * 71.82730 * 20 18 17 22 22 C 1.55839 * 103.44948 * 359.97438 * 21 20 18 23 23 H 1.09002 * 115.56272 * 159.56610 * 22 21 20 24 24 N 1.50235 * 101.04795 * 32.93852 * 18 17 15 25 25 C 1.36941 * 130.83549 * 126.05333 * 24 18 17 26 26 H 1.07997 * 119.99722 * 179.97438 * 25 24 18 27 27 C 1.38811 * 120.00120 * 359.97196 * 25 24 18 28 28 N 1.31620 * 119.99802 * 359.97438 * 27 25 24 29 29 Si 1.86801 * 120.00226 * 179.97438 * 27 25 24 30 30 H 1.48504 * 109.46788 * 0.02562 * 29 27 25 31 31 H 1.48497 * 109.47266 * 119.99451 * 29 27 25 32 32 H 1.48499 * 109.47166 * 239.99862 * 29 27 25 33 33 H 1.08996 * 109.47373 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47621 * 299.99804 * 1 2 3 35 35 H 1.09004 * 109.47568 * 59.99925 * 1 2 3 36 36 H 1.09006 * 109.47479 * 240.00476 * 2 1 3 37 37 H 1.08999 * 109.47153 * 119.99883 * 2 1 3 38 38 H 1.08003 * 125.98658 * 179.97438 * 5 4 3 39 39 H 1.07995 * 126.59271 * 180.02562 * 6 5 4 40 40 H 1.09001 * 109.46670 * 299.99696 * 10 8 7 41 41 H 1.08997 * 109.46730 * 59.99940 * 10 8 7 42 42 H 1.08997 * 109.46665 * 179.97438 * 10 8 7 43 43 H 1.08998 * 109.46771 * 295.00225 * 11 8 7 44 44 H 1.08999 * 109.46961 * 54.99816 * 11 8 7 45 45 H 0.97004 * 120.00049 * 359.97438 * 14 12 11 46 46 H 1.08994 * 110.62673 * 236.97680 * 17 15 14 47 47 H 1.09000 * 110.62500 * 0.02562 * 17 15 14 48 48 H 1.08995 * 110.62869 * 313.33449 * 20 18 17 49 49 H 1.09007 * 110.75953 * 190.37749 * 20 18 17 50 50 H 1.09005 * 110.62624 * 241.50662 * 21 20 18 51 51 H 1.09000 * 110.76543 * 118.55614 * 21 20 18 52 52 H 0.97007 * 119.99617 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2862 2.1378 1.0604 5 6 2.7144 3.3512 0.6819 6 6 2.7258 3.3878 -0.6643 7 7 2.2997 2.1612 -1.0974 8 6 2.1561 1.7330 -2.4910 9 1 1.7938 0.7053 -2.5199 10 6 1.1577 2.6466 -3.2049 11 6 3.5136 1.8145 -3.1921 12 6 3.3924 1.2591 -4.5877 13 8 2.3253 0.8398 -4.9829 14 7 4.4697 1.2292 -5.3970 15 6 4.3517 0.6898 -6.7539 16 1 3.3882 0.9552 -7.1890 17 6 5.5138 1.1942 -7.6445 18 6 6.2503 -0.1163 -8.0558 19 1 6.8784 -0.0439 -8.9438 20 6 6.9698 -0.6001 -6.7608 21 6 5.8077 -1.1045 -5.8704 22 6 4.5443 -0.8562 -6.7482 23 1 3.6630 -1.4388 -6.4797 24 7 5.1018 -1.0823 -8.1252 25 6 4.6902 -1.9131 -9.1330 26 1 3.8261 -2.5455 -8.9924 27 6 5.3836 -1.9424 -10.3352 28 7 6.4364 -1.1713 -10.5066 29 14 4.8225 -3.0763 -11.7096 30 1 3.6231 -3.8328 -11.2686 31 1 4.4847 -2.2697 -12.9098 32 1 5.9132 -4.0272 -12.0432 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3634 0.5138 0.8900 35 1 -0.3634 0.5138 -0.8900 36 1 1.8934 -0.5138 -0.8901 37 1 1.8933 -0.5138 0.8900 38 1 2.9993 4.1578 1.3411 39 1 3.0203 4.2224 -1.2831 40 1 0.1906 2.5884 -2.7054 41 1 1.5205 3.6740 -3.1760 42 1 1.0513 2.3282 -4.2419 43 1 3.8350 2.8549 -3.2416 44 1 4.2470 1.2340 -2.6324 45 1 5.3230 1.5656 -5.0813 46 1 5.1279 1.7099 -8.5237 47 1 6.1782 1.8454 -7.0764 48 1 7.4913 0.2271 -6.2794 49 1 7.6627 -1.4115 -6.9839 50 1 5.7529 -0.5274 -4.9472 51 1 5.9212 -2.1663 -5.6517 52 1 6.9207 -1.1916 -11.3469 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109307629.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:07 Heat of formation + Delta-G solvation = 64.310400 kcal Electronic energy + Delta-G solvation = -31309.207797 eV Core-core repulsion = 27310.868387 eV Total energy + Delta-G solvation = -3998.339410 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.38325 -40.24354 -38.70206 -35.82163 -34.07410 -34.02838 -32.42043 -31.07588 -29.52091 -29.14866 -28.81522 -28.51205 -27.10980 -24.33470 -24.09584 -23.31111 -21.65273 -21.21810 -20.44704 -19.58582 -19.44565 -18.62254 -17.71902 -17.14822 -16.42909 -15.87705 -15.75001 -15.27207 -15.05728 -14.92660 -14.55594 -14.42714 -14.10498 -13.90605 -13.70148 -13.68902 -13.39314 -13.13306 -12.58055 -12.45547 -12.37987 -12.03578 -11.88258 -11.82993 -11.75741 -11.58240 -11.50536 -11.28705 -11.11277 -10.99303 -10.95968 -10.90202 -10.29904 -10.18333 -10.11632 -9.92327 -9.85222 -9.69650 -9.47628 -9.31236 -9.00076 -8.62483 -8.52748 -6.98161 -5.78867 -3.16946 1.86489 2.45581 2.63459 2.99164 3.33828 3.36892 3.42151 3.43787 4.16192 4.19857 4.39289 4.43265 4.52952 4.70942 4.83904 4.94674 5.01039 5.07682 5.12162 5.16542 5.18633 5.31925 5.34678 5.41024 5.46057 5.52078 5.57172 5.62942 5.71525 5.75648 5.76587 5.88338 5.91791 5.94821 5.98921 6.02947 6.18938 6.21504 6.25037 6.45101 6.51147 6.57287 6.60832 6.72380 6.87135 6.91078 7.01762 7.18568 7.46503 7.60791 7.73652 7.95916 8.08798 8.29922 9.04505 9.67052 10.46612 11.31019 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020538 B = 0.002297 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.984204 B =12185.238246 C =12613.246279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.042 4.042 3 C 0.210 3.790 4 N -0.494 5.494 5 C -0.032 4.032 6 C -0.056 4.056 7 N -0.447 5.447 8 C 0.147 3.853 9 H 0.112 0.888 10 C -0.165 4.165 11 C -0.153 4.153 12 C 0.514 3.486 13 O -0.539 6.539 14 N -0.708 5.708 15 C 0.127 3.873 16 H 0.083 0.917 17 C -0.141 4.141 18 C 0.156 3.844 19 H 0.153 0.847 20 C -0.137 4.137 21 C -0.131 4.131 22 C 0.129 3.871 23 H 0.085 0.915 24 N -0.589 5.589 25 C -0.211 4.211 26 H 0.080 0.920 27 C -0.012 4.012 28 N -0.923 5.923 29 Si 0.916 3.084 30 H -0.280 1.280 31 H -0.290 1.290 32 H -0.291 1.291 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.167 0.833 39 H 0.170 0.830 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.396 0.604 46 H 0.066 0.934 47 H 0.054 0.946 48 H 0.044 0.956 49 H 0.055 0.945 50 H 0.049 0.951 51 H 0.051 0.949 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.836 9.051 18.021 20.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.081 4.081 3 C -0.052 4.052 4 N -0.212 5.212 5 C -0.180 4.180 6 C -0.189 4.189 7 N -0.130 5.130 8 C 0.044 3.956 9 H 0.130 0.870 10 C -0.222 4.222 11 C -0.194 4.194 12 C 0.299 3.701 13 O -0.417 6.417 14 N -0.358 5.358 15 C 0.021 3.979 16 H 0.101 0.899 17 C -0.181 4.181 18 C 0.050 3.950 19 H 0.170 0.830 20 C -0.177 4.177 21 C -0.170 4.170 22 C 0.020 3.980 23 H 0.103 0.897 24 N -0.309 5.309 25 C -0.339 4.339 26 H 0.098 0.902 27 C -0.207 4.207 28 N -0.571 5.571 29 Si 0.747 3.253 30 H -0.205 1.205 31 H -0.217 1.217 32 H -0.218 1.218 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.184 0.816 39 H 0.187 0.813 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.230 0.770 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.063 0.937 49 H 0.074 0.926 50 H 0.067 0.933 51 H 0.069 0.931 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.693 8.294 18.053 20.666 hybrid contribution 0.444 0.139 -1.285 1.366 sum -5.250 8.433 16.768 19.489 Atomic orbital electron populations 1.21736 0.93878 1.02392 1.02463 1.19994 0.96552 0.87455 1.04076 1.23282 1.03908 0.96665 0.81359 1.70233 1.18402 1.04303 1.28306 1.22245 1.06737 0.96236 0.92760 1.22598 1.09631 0.90016 0.96699 1.45641 1.48631 1.11558 1.07172 1.21178 0.95552 1.01594 0.77307 0.87020 1.22275 0.98102 0.98673 1.03162 1.22008 0.98485 1.04011 0.94856 1.20106 0.84506 0.79067 0.86428 1.90695 1.27394 1.47713 1.75917 1.46251 1.11589 1.62587 1.15374 1.22678 0.99825 0.95831 0.79519 0.89908 1.23306 0.96650 1.00022 0.98142 1.23698 0.89706 0.85118 0.96512 0.83009 1.23058 0.96997 0.99348 0.98293 1.22917 0.97353 0.99703 0.97068 1.23163 0.94911 0.92652 0.87273 0.89659 1.46465 1.29613 1.45149 1.09673 1.19106 1.09411 1.14328 0.91040 0.90233 1.24706 0.97941 1.00201 0.97869 1.69472 1.20719 1.41880 1.25058 0.85958 0.77707 0.79765 0.81841 1.20518 1.21750 1.21772 0.91512 0.91963 0.92733 0.90278 0.88740 0.81574 0.81257 0.92050 0.92352 0.88166 0.88329 0.88308 0.76981 0.91543 0.92734 0.93689 0.92621 0.93261 0.93054 0.93586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.89 37.15 0.37 -0.79 16 2 C -0.04 -0.36 6.08 -27.89 -0.17 -0.53 16 3 C 0.21 2.33 7.16 -155.41 -1.11 1.22 16 4 N -0.49 -6.26 11.25 -10.81 -0.12 -6.38 16 5 C -0.03 -0.34 11.87 -17.82 -0.21 -0.55 16 6 C -0.06 -0.52 10.70 -16.56 -0.18 -0.70 16 7 N -0.45 -4.41 2.61 -106.83 -0.28 -4.68 16 8 C 0.15 1.37 2.64 -67.93 -0.18 1.19 16 9 H 0.11 1.13 6.48 -51.92 -0.34 0.79 16 10 C -0.16 -1.55 8.99 37.16 0.33 -1.21 16 11 C -0.15 -1.34 5.19 -27.88 -0.14 -1.49 16 12 C 0.51 6.38 7.54 -10.99 -0.08 6.29 16 13 O -0.54 -8.55 13.69 5.56 0.08 -8.47 16 14 N -0.71 -9.00 3.63 -51.43 -0.19 -9.19 16 15 C 0.13 2.18 3.08 -65.46 -0.20 1.98 16 16 H 0.08 1.60 7.70 -51.93 -0.40 1.21 16 17 C -0.14 -2.51 6.20 -24.23 -0.15 -2.66 16 18 C 0.16 3.37 4.69 -62.80 -0.29 3.07 16 19 H 0.15 3.78 5.57 -51.93 -0.29 3.49 16 20 C -0.14 -2.53 6.44 -24.24 -0.16 -2.68 16 21 C -0.13 -2.28 6.33 -24.24 -0.15 -2.43 16 22 C 0.13 2.56 5.34 -62.82 -0.34 2.22 16 23 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 24 N -0.59 -14.13 2.99 -145.82 -0.44 -14.56 16 25 C -0.21 -5.67 10.59 -15.06 -0.16 -5.83 16 26 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 27 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 28 N -0.92 -25.62 10.48 55.49 0.58 -25.03 16 29 Si 0.92 21.62 29.55 -169.99 -5.02 16.59 16 30 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 31 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 32 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.63 7.07 -51.93 -0.37 0.26 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.17 1.36 8.06 -52.48 -0.42 0.94 16 39 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.48 7.95 -51.93 -0.41 0.07 16 42 H 0.10 1.14 5.95 -51.93 -0.31 0.83 16 43 H 0.10 0.70 8.09 -51.93 -0.42 0.28 16 44 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.40 4.07 8.02 -40.82 -0.33 3.74 16 46 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.05 0.80 7.34 -51.93 -0.38 0.42 16 48 H 0.04 0.69 7.81 -51.93 -0.41 0.29 16 49 H 0.05 1.11 8.14 -51.92 -0.42 0.69 16 50 H 0.05 0.72 6.48 -51.93 -0.34 0.38 16 51 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 52 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 405.87 15.07 6.12 6.12 Total: -1.00 -31.21 405.87 -10.80 -42.01 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -8.60 Total: 6.92 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -2.92 Total: -3.32 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -0.44 Total: -59.85 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.08 Total: -8.47 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.21 -10.80 -42.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109307629.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.321 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds