Wall clock time and date at job start Wed Apr 1 2020 04:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47068 * 2 1 4 4 N 1.30503 * 125.65268 * 90.02276 * 3 2 1 5 5 C 1.34120 * 109.25776 * 180.02562 * 4 3 2 6 6 C 1.34668 * 108.02585 * 0.02562 * 5 4 3 7 7 N 1.35052 * 125.65229 * 269.72038 * 3 2 1 8 8 C 1.46496 * 126.39506 * 359.97438 * 7 3 2 9 9 H 1.09007 * 109.47349 * 359.97438 * 8 7 3 10 10 C 1.53002 * 109.47126 * 120.00134 * 8 7 3 11 11 C 1.53004 * 109.47244 * 240.00220 * 8 7 3 12 12 C 1.50699 * 109.47357 * 174.99870 * 11 8 7 13 13 O 1.21277 * 119.99848 * 0.02562 * 12 11 8 14 14 N 1.34771 * 120.00167 * 179.97438 * 12 11 8 15 15 C 1.46494 * 120.00200 * 180.02562 * 14 12 11 16 16 H 1.09003 * 110.56240 * 36.96705 * 15 14 12 17 17 C 1.54855 * 110.62916 * 160.04122 * 15 14 12 18 18 C 1.55852 * 103.44449 * 118.48689 * 17 15 14 19 19 H 1.09003 * 115.55908 * 159.56453 * 18 17 15 20 20 C 1.55845 * 105.06303 * 288.17546 * 18 17 15 21 21 C 1.54849 * 103.44361 * 71.82730 * 20 18 17 22 22 C 1.55839 * 103.44948 * 359.97438 * 21 20 18 23 23 H 1.09002 * 115.56272 * 159.56610 * 22 21 20 24 24 N 1.50235 * 101.04795 * 32.93852 * 18 17 15 25 25 C 1.36941 * 130.83549 * 126.05333 * 24 18 17 26 26 H 1.07997 * 119.99722 * 179.97438 * 25 24 18 27 27 C 1.38811 * 120.00120 * 359.97196 * 25 24 18 28 28 N 1.31620 * 119.99802 * 359.97438 * 27 25 24 29 29 Si 1.86801 * 120.00226 * 179.97438 * 27 25 24 30 30 H 1.48504 * 109.46788 * 0.02562 * 29 27 25 31 31 H 1.48497 * 109.47266 * 119.99451 * 29 27 25 32 32 H 1.48499 * 109.47166 * 239.99862 * 29 27 25 33 33 H 1.08996 * 109.47373 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47621 * 299.99804 * 1 2 3 35 35 H 1.09004 * 109.47568 * 59.99925 * 1 2 3 36 36 H 1.09006 * 109.47479 * 240.00476 * 2 1 3 37 37 H 1.08999 * 109.47153 * 119.99883 * 2 1 3 38 38 H 1.08003 * 125.98658 * 179.97438 * 5 4 3 39 39 H 1.07995 * 126.59271 * 180.02562 * 6 5 4 40 40 H 1.09001 * 109.46670 * 299.99696 * 10 8 7 41 41 H 1.08997 * 109.46730 * 59.99940 * 10 8 7 42 42 H 1.08997 * 109.46665 * 179.97438 * 10 8 7 43 43 H 1.08998 * 109.46771 * 295.00225 * 11 8 7 44 44 H 1.08999 * 109.46961 * 54.99816 * 11 8 7 45 45 H 0.97004 * 120.00049 * 359.97438 * 14 12 11 46 46 H 1.08994 * 110.62673 * 236.97680 * 17 15 14 47 47 H 1.09000 * 110.62500 * 0.02562 * 17 15 14 48 48 H 1.08995 * 110.62869 * 313.33449 * 20 18 17 49 49 H 1.09007 * 110.75953 * 190.37749 * 20 18 17 50 50 H 1.09005 * 110.62624 * 241.50662 * 21 20 18 51 51 H 1.09000 * 110.76543 * 118.55614 * 21 20 18 52 52 H 0.97007 * 119.99617 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2862 2.1378 1.0604 5 6 2.7144 3.3512 0.6819 6 6 2.7258 3.3878 -0.6643 7 7 2.2997 2.1612 -1.0974 8 6 2.1561 1.7330 -2.4910 9 1 1.7938 0.7053 -2.5199 10 6 1.1577 2.6466 -3.2049 11 6 3.5136 1.8145 -3.1921 12 6 3.3924 1.2591 -4.5877 13 8 2.3253 0.8398 -4.9829 14 7 4.4697 1.2292 -5.3970 15 6 4.3517 0.6898 -6.7539 16 1 3.3882 0.9552 -7.1890 17 6 5.5138 1.1942 -7.6445 18 6 6.2503 -0.1163 -8.0558 19 1 6.8784 -0.0439 -8.9438 20 6 6.9698 -0.6001 -6.7608 21 6 5.8077 -1.1045 -5.8704 22 6 4.5443 -0.8562 -6.7482 23 1 3.6630 -1.4388 -6.4797 24 7 5.1018 -1.0823 -8.1252 25 6 4.6902 -1.9131 -9.1330 26 1 3.8261 -2.5455 -8.9924 27 6 5.3836 -1.9424 -10.3352 28 7 6.4364 -1.1713 -10.5066 29 14 4.8225 -3.0763 -11.7096 30 1 3.6231 -3.8328 -11.2686 31 1 4.4847 -2.2697 -12.9098 32 1 5.9132 -4.0272 -12.0432 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3634 0.5138 0.8900 35 1 -0.3634 0.5138 -0.8900 36 1 1.8934 -0.5138 -0.8901 37 1 1.8933 -0.5138 0.8900 38 1 2.9993 4.1578 1.3411 39 1 3.0203 4.2224 -1.2831 40 1 0.1906 2.5884 -2.7054 41 1 1.5205 3.6740 -3.1760 42 1 1.0513 2.3282 -4.2419 43 1 3.8350 2.8549 -3.2416 44 1 4.2470 1.2340 -2.6324 45 1 5.3230 1.5656 -5.0813 46 1 5.1279 1.7099 -8.5237 47 1 6.1782 1.8454 -7.0764 48 1 7.4913 0.2271 -6.2794 49 1 7.6627 -1.4115 -6.9839 50 1 5.7529 -0.5274 -4.9472 51 1 5.9212 -2.1663 -5.6517 52 1 6.9207 -1.1916 -11.3469 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109307629.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:06 Heat of formation + Delta-G solvation = 47.447319 kcal Electronic energy + Delta-G solvation = -31309.939035 eV Core-core repulsion = 27310.868387 eV Total energy + Delta-G solvation = -3999.070648 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.12722 -41.51158 -39.99467 -36.66141 -35.43125 -34.69111 -34.21798 -31.90869 -31.00928 -30.77956 -29.71954 -29.50923 -28.32469 -26.10762 -24.82820 -24.13652 -22.88679 -22.26173 -21.61425 -21.04277 -20.24717 -20.05955 -18.94521 -18.48009 -17.43347 -16.92904 -16.82761 -16.71425 -16.19327 -16.04509 -15.81833 -15.58192 -15.15407 -15.03893 -14.56889 -14.42519 -14.28450 -14.04013 -13.95491 -13.80900 -13.49770 -13.21501 -13.18378 -12.96482 -12.82717 -12.77259 -12.61617 -12.52092 -12.47698 -12.35319 -12.19314 -11.98792 -11.95277 -11.88609 -11.54284 -11.18943 -11.06704 -10.98950 -10.78708 -10.74121 -10.54173 -9.95271 -9.24977 -8.85734 -7.80731 -5.19423 1.13800 1.45411 1.46277 1.55575 1.65166 1.67874 2.22402 2.32912 2.51260 3.33346 3.42675 3.49223 3.53161 3.68937 3.80325 3.91777 3.99870 4.09608 4.14092 4.17768 4.26608 4.36388 4.42128 4.44763 4.48720 4.51061 4.52945 4.61893 4.69925 4.71673 4.72963 4.79985 4.81868 4.89067 4.98382 4.99506 5.07605 5.08936 5.15878 5.17274 5.27657 5.28015 5.34199 5.46727 5.47144 5.56086 5.76459 5.89704 5.90996 6.26118 6.28200 6.63819 7.05342 7.21098 7.32724 7.68886 8.54618 9.26446 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020538 B = 0.002297 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.984204 B =12185.238246 C =12613.246279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.042 4.042 3 C 0.195 3.805 4 N -0.528 5.528 5 C -0.055 4.055 6 C -0.048 4.048 7 N -0.445 5.445 8 C 0.150 3.850 9 H 0.102 0.898 10 C -0.159 4.159 11 C -0.138 4.138 12 C 0.516 3.484 13 O -0.575 6.575 14 N -0.697 5.697 15 C 0.149 3.851 16 H 0.056 0.944 17 C -0.126 4.126 18 C 0.139 3.861 19 H 0.116 0.884 20 C -0.127 4.127 21 C -0.116 4.116 22 C 0.119 3.881 23 H 0.068 0.932 24 N -0.618 5.618 25 C -0.222 4.222 26 H 0.071 0.929 27 C -0.064 4.064 28 N -0.944 5.944 29 Si 0.973 3.027 30 H -0.274 1.274 31 H -0.292 1.292 32 H -0.292 1.292 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.182 0.818 39 H 0.201 0.799 40 H 0.056 0.944 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.128 0.872 44 H 0.115 0.885 45 H 0.415 0.585 46 H 0.045 0.955 47 H 0.097 0.903 48 H 0.087 0.913 49 H 0.031 0.969 50 H 0.089 0.911 51 H 0.039 0.961 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.153 10.613 19.942 22.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.081 4.081 3 C -0.067 4.067 4 N -0.248 5.248 5 C -0.202 4.202 6 C -0.180 4.180 7 N -0.127 5.127 8 C 0.047 3.953 9 H 0.120 0.880 10 C -0.216 4.216 11 C -0.179 4.179 12 C 0.303 3.697 13 O -0.455 6.455 14 N -0.349 5.349 15 C 0.042 3.958 16 H 0.074 0.926 17 C -0.166 4.166 18 C 0.033 3.967 19 H 0.134 0.866 20 C -0.166 4.166 21 C -0.156 4.156 22 C 0.011 3.989 23 H 0.086 0.914 24 N -0.340 5.340 25 C -0.351 4.351 26 H 0.089 0.911 27 C -0.256 4.256 28 N -0.593 5.593 29 Si 0.803 3.197 30 H -0.199 1.199 31 H -0.220 1.220 32 H -0.219 1.219 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.199 0.801 39 H 0.218 0.782 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.146 0.854 44 H 0.134 0.866 45 H 0.252 0.748 46 H 0.064 0.936 47 H 0.115 0.885 48 H 0.106 0.894 49 H 0.050 0.950 50 H 0.107 0.893 51 H 0.058 0.942 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.998 9.883 20.033 22.890 hybrid contribution 0.165 -0.326 -1.821 1.857 sum -4.833 9.557 18.212 21.127 Atomic orbital electron populations 1.21690 0.93510 1.03107 1.01636 1.20069 0.96837 0.86696 1.04536 1.23608 1.04160 0.97401 0.81507 1.70205 1.19541 1.05556 1.29489 1.22656 1.07373 0.96200 0.93966 1.23071 1.08121 0.90230 0.96619 1.45648 1.48448 1.11739 1.06914 1.21104 0.95972 1.01099 0.77149 0.88026 1.22184 0.98193 0.99509 1.01745 1.21935 0.98400 1.05729 0.91811 1.20705 0.83515 0.78005 0.87468 1.90708 1.28909 1.49040 1.76856 1.45969 1.12877 1.62511 1.13569 1.22028 0.98233 0.93813 0.81724 0.92622 1.23121 0.96882 0.98522 0.98063 1.23613 0.89527 0.86697 0.96877 0.86624 1.22952 0.96723 0.99942 0.96976 1.22818 0.95192 0.99729 0.97828 1.23315 0.95325 0.94333 0.85916 0.91424 1.46727 1.31072 1.45542 1.10691 1.19323 1.09010 1.14544 0.92254 0.91102 1.25391 0.98510 1.01941 0.99800 1.69702 1.21528 1.43068 1.25051 0.85072 0.77290 0.78102 0.79256 1.19859 1.21952 1.21943 0.90053 0.92874 0.93364 0.89511 0.88519 0.80057 0.78198 0.92465 0.90751 0.90178 0.85375 0.86638 0.74763 0.93602 0.88455 0.89426 0.94957 0.89295 0.94246 0.94205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.89 71.98 0.71 -1.41 16 2 C -0.04 -0.69 6.08 29.85 0.18 -0.51 16 3 C 0.20 4.02 7.16 138.12 0.99 5.00 16 4 N -0.53 -12.71 11.25 -188.13 -2.12 -14.83 16 5 C -0.05 -1.04 11.87 83.52 0.99 -0.05 16 6 C -0.05 -0.72 10.70 83.09 0.89 0.17 16 7 N -0.44 -7.54 2.61 -491.89 -1.28 -8.83 16 8 C 0.15 2.39 2.64 44.99 0.12 2.51 16 9 H 0.10 1.86 6.48 -2.38 -0.02 1.85 16 10 C -0.16 -2.64 8.99 71.98 0.65 -2.00 16 11 C -0.14 -1.83 5.19 29.85 0.15 -1.67 16 12 C 0.52 11.21 7.54 87.66 0.66 11.87 16 13 O -0.58 -17.50 13.69 -3.02 -0.04 -17.54 16 14 N -0.70 -15.16 3.63 -435.01 -1.58 -16.74 16 15 C 0.15 4.89 3.08 46.59 0.14 5.03 16 16 H 0.06 2.16 7.70 -2.39 -0.02 2.14 16 17 C -0.13 -4.27 6.20 32.21 0.20 -4.07 16 18 C 0.14 5.95 4.69 46.23 0.22 6.17 16 19 H 0.12 5.91 5.57 -2.39 -0.01 5.89 16 20 C -0.13 -4.39 6.44 32.21 0.21 -4.18 16 21 C -0.12 -3.78 6.33 32.21 0.20 -3.58 16 22 C 0.12 4.66 5.34 46.20 0.25 4.91 16 23 H 0.07 2.84 8.14 -2.39 -0.02 2.83 16 24 N -0.62 -30.24 2.99 -615.27 -1.84 -32.08 16 25 C -0.22 -12.33 10.59 84.03 0.89 -11.44 16 26 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 27 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 28 N -0.94 -54.03 10.48 21.65 0.23 -53.81 16 29 Si 0.97 45.59 29.55 68.60 2.03 47.62 16 30 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 31 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 32 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 33 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.09 1.25 7.07 -2.38 -0.02 1.23 16 37 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.18 2.60 8.06 -2.91 -0.02 2.57 16 39 H 0.20 1.63 8.06 -2.91 -0.02 1.61 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 0.98 7.95 -2.39 -0.02 0.96 16 42 H 0.08 1.72 5.95 -2.39 -0.01 1.71 16 43 H 0.13 1.04 8.09 -2.39 -0.02 1.02 16 44 H 0.12 1.27 8.14 -2.39 -0.02 1.26 16 45 H 0.41 6.16 8.02 -92.71 -0.74 5.42 16 46 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.10 2.43 7.34 -2.39 -0.02 2.41 16 48 H 0.09 2.28 7.81 -2.39 -0.02 2.27 16 49 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 50 H 0.09 2.17 6.48 -2.38 -0.02 2.16 16 51 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 52 H 0.25 13.84 8.31 -92.70 -0.77 13.06 16 Total: -1.00 -72.00 405.87 3.49 -68.51 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 0.17 Total: 23.99 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 7.92 Total: 3.69 kcal Atomic # 7 Polarization: -119.69 SS G_CDS: -6.59 Total: -126.28 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.04 Total: -17.54 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -72.00 3.49 -68.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109307629.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.959 kcal (2) G-P(sol) polarization free energy of solvation -72.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds