Wall clock time and date at job start Wed Apr 1 2020 06:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46915 * 2 1 4 4 C 1.53002 * 109.46915 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46933 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.46833 * 180.02562 * 5 4 3 7 7 C 1.35361 * 126.38825 * 85.00125 * 6 5 4 8 8 C 1.41509 * 105.50506 * 180.02562 * 7 6 5 9 9 C 1.47706 * 126.51750 * 179.97438 * 8 7 6 10 10 O 1.21573 * 120.00101 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99720 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99755 * 180.27918 * 11 9 8 13 13 H 1.09001 * 110.56232 * 36.95050 * 12 11 9 14 14 C 1.54855 * 110.62769 * 160.02427 * 12 11 9 15 15 C 1.55846 * 103.44609 * 118.48706 * 14 12 11 16 16 H 1.08996 * 116.12527 * 159.15097 * 15 14 12 17 17 C 1.55847 * 105.06113 * 288.17796 * 15 14 12 18 18 C 1.54848 * 103.44747 * 71.82620 * 17 15 14 19 19 C 1.55842 * 110.62546 * 274.04838 * 12 11 9 20 20 H 1.09000 * 115.56484 * 81.94351 * 19 12 11 21 21 N 1.50237 * 101.05382 * 208.57509 * 19 12 11 22 22 C 1.36936 * 130.83969 * 233.95366 * 21 19 12 23 23 H 1.07999 * 120.00101 * 359.97438 * 22 21 19 24 24 C 1.38817 * 120.00115 * 179.97438 * 22 21 19 25 25 N 1.31614 * 119.99573 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99952 * 179.97438 * 24 22 21 27 27 H 1.48490 * 109.47064 * 89.99910 * 26 24 22 28 28 H 1.48500 * 109.46843 * 210.00332 * 26 24 22 29 29 H 1.48505 * 109.47162 * 329.99575 * 26 24 22 30 30 N 1.31809 * 106.96146 * 0.23936 * 8 7 6 31 31 N 1.28467 * 110.07269 * 359.59612 * 30 8 7 32 32 H 0.97004 * 124.88322 * 180.13409 * 31 30 8 33 33 H 1.08997 * 109.46965 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.47227 * 299.99683 * 1 2 3 35 35 H 1.09001 * 109.47019 * 59.99897 * 1 2 3 36 36 H 1.09003 * 109.46744 * 240.00315 * 2 1 3 37 37 H 1.09001 * 109.47019 * 120.00103 * 2 1 3 38 38 H 1.09007 * 109.46914 * 60.00125 * 3 2 1 39 39 H 1.08993 * 109.47536 * 300.00149 * 3 2 1 40 40 H 1.08995 * 109.46926 * 60.00047 * 4 3 2 41 41 H 1.09001 * 109.47019 * 300.00103 * 4 3 2 42 42 H 1.08999 * 109.47357 * 59.99620 * 5 4 3 43 43 H 1.09001 * 109.47029 * 299.99701 * 5 4 3 44 44 H 1.07996 * 127.25189 * 0.03442 * 7 6 5 45 45 H 0.96996 * 120.00074 * 359.97438 * 11 9 8 46 46 H 1.08995 * 110.62874 * 236.97840 * 14 12 11 47 47 H 1.09002 * 110.62076 * 359.97438 * 14 12 11 48 48 H 1.09000 * 110.62908 * 313.33140 * 17 15 14 49 49 H 1.09004 * 110.62444 * 190.31584 * 17 15 14 50 50 H 1.09004 * 110.62552 * 241.50699 * 18 17 15 51 51 H 1.09004 * 110.76325 * 118.54986 * 18 17 15 52 52 H 0.97007 * 119.99909 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8851 0.0013 6 6 5.5869 2.8850 0.0013 7 6 6.3899 2.7906 -1.0843 8 6 7.7121 2.8337 -0.5817 9 6 8.9564 2.7639 -1.3744 10 8 8.9013 2.6589 -2.5844 11 7 10.1530 2.8166 -0.7563 12 6 11.3872 2.7536 -1.5431 13 1 11.2694 3.2914 -2.4838 14 6 12.5799 3.3189 -0.7332 15 6 13.5472 2.1026 -0.6159 16 1 14.5897 2.3374 -0.4008 17 6 12.8560 1.1307 0.3874 18 6 11.6634 0.5654 -0.4225 19 6 11.7963 1.2728 -1.8048 20 1 11.2861 0.7834 -2.6344 21 7 13.2887 1.4022 -1.9197 22 6 14.1487 1.0042 -2.9082 23 1 13.7675 0.5053 -3.7870 24 6 15.5104 1.2419 -2.7808 25 7 15.9748 1.8503 -1.7101 26 14 16.6835 0.6983 -4.1290 27 1 16.8377 1.7919 -5.1216 28 1 18.0064 0.3788 -3.5348 29 1 16.1390 -0.5082 -4.8023 30 7 7.6219 2.9421 0.7288 31 7 6.3880 2.9787 1.0844 32 1 6.0765 3.0578 1.9996 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3634 0.5138 0.8901 35 1 -0.3633 0.5139 -0.8900 36 1 1.8933 -0.5138 -0.8901 37 1 1.8933 -0.5139 0.8900 38 1 1.6766 1.9563 0.8901 39 1 1.6767 1.9564 -0.8899 40 1 3.9336 0.9286 -0.8891 41 1 3.9329 0.9288 0.8909 42 1 3.7162 3.3987 0.8912 43 1 3.7170 3.3991 -0.8887 44 1 6.0858 2.7013 -2.1167 45 1 10.1970 2.9007 0.2090 46 1 13.0563 4.1378 -1.2721 47 1 12.2529 3.6465 0.2537 48 1 12.5022 1.6722 1.2647 49 1 13.5368 0.3304 0.6776 50 1 10.7181 0.8266 0.0531 51 1 11.7500 -0.5154 -0.5344 52 1 16.9263 2.0168 -1.6212 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109832089.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:36:47 Heat of formation + Delta-G solvation = 59.673034 kcal Electronic energy + Delta-G solvation = -30120.624696 eV Core-core repulsion = 26122.084195 eV Total energy + Delta-G solvation = -3998.540501 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -42.81140 -39.79237 -38.06991 -36.84186 -33.94228 -33.58665 -32.32991 -31.86349 -30.26146 -29.21399 -28.94917 -27.56978 -26.61917 -24.52790 -23.57589 -22.84685 -21.46037 -21.21880 -21.16394 -20.06847 -19.34269 -18.47731 -17.78625 -17.11485 -16.55913 -16.21628 -15.86113 -15.32939 -14.92508 -14.69030 -14.56954 -14.37229 -14.03452 -13.83132 -13.73789 -13.66274 -13.54433 -13.14127 -12.50428 -12.26994 -12.23786 -12.14711 -11.69867 -11.50151 -11.43487 -11.41019 -11.25365 -10.99489 -10.98669 -10.89901 -10.84618 -10.83000 -10.76486 -10.14051 -10.04277 -9.87419 -9.70241 -9.47905 -9.30679 -9.18856 -9.11553 -8.87683 -8.40778 -6.85647 -5.67603 -3.05211 1.56605 1.99566 2.67444 3.43291 3.47752 3.49514 3.52991 3.64313 4.15575 4.35224 4.44962 4.47010 4.52269 4.65953 4.70742 4.94251 4.98303 5.14668 5.26610 5.28034 5.30453 5.38152 5.43351 5.44166 5.47356 5.53192 5.63405 5.66576 5.73846 5.75985 5.87445 5.88568 5.91954 5.92583 6.05151 6.14835 6.21220 6.27015 6.39301 6.42696 6.61445 6.69821 6.76217 6.80026 6.88288 7.04880 7.07759 7.33976 7.58324 7.65563 7.82923 8.00231 8.22511 8.56823 9.15862 9.78272 10.59372 11.42101 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022305 B = 0.001876 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.996206 B =14921.601973 C =15326.705821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.118 4.118 5 C -0.049 4.049 6 C 0.013 3.987 7 C -0.175 4.175 8 C -0.002 4.002 9 C 0.595 3.405 10 O -0.535 6.535 11 N -0.697 5.697 12 C 0.127 3.873 13 H 0.083 0.917 14 C -0.140 4.140 15 C 0.154 3.846 16 H 0.155 0.845 17 C -0.137 4.137 18 C -0.131 4.131 19 C 0.129 3.871 20 H 0.086 0.914 21 N -0.590 5.590 22 C -0.208 4.208 23 H 0.079 0.921 24 C -0.014 4.014 25 N -0.924 5.924 26 Si 0.917 3.083 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.282 1.282 30 N -0.260 5.260 31 N -0.382 5.382 32 H 0.442 0.558 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.161 0.839 45 H 0.401 0.599 46 H 0.066 0.934 47 H 0.055 0.945 48 H 0.045 0.955 49 H 0.054 0.946 50 H 0.052 0.948 51 H 0.050 0.950 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.861 2.142 9.572 29.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.156 4.156 5 C -0.088 4.088 6 C -0.113 4.113 7 C -0.203 4.203 8 C -0.164 4.164 9 C 0.378 3.622 10 O -0.410 6.410 11 N -0.347 5.347 12 C 0.021 3.979 13 H 0.102 0.898 14 C -0.180 4.180 15 C 0.048 3.952 16 H 0.172 0.828 17 C -0.176 4.176 18 C -0.171 4.171 19 C 0.020 3.980 20 H 0.104 0.896 21 N -0.310 5.310 22 C -0.336 4.336 23 H 0.097 0.903 24 C -0.209 4.209 25 N -0.573 5.573 26 Si 0.748 3.252 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.208 1.208 30 N -0.095 5.095 31 N -0.096 5.096 32 H 0.286 0.714 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.110 0.890 44 H 0.179 0.821 45 H 0.236 0.764 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.064 0.936 49 H 0.073 0.927 50 H 0.070 0.930 51 H 0.068 0.932 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -26.860 2.094 9.438 28.547 hybrid contribution -0.135 -0.264 -0.321 0.437 sum -26.995 1.830 9.118 28.551 Atomic orbital electron populations 1.21781 0.95888 1.01655 1.01754 1.21541 0.95843 0.96829 1.02234 1.21628 0.94838 0.97052 1.02226 1.21639 0.95422 0.95443 1.03064 1.20179 0.86367 0.98263 1.03956 1.21383 0.94913 1.07614 0.87402 1.21518 0.90534 1.08507 0.99775 1.22137 0.95550 1.08944 0.89720 1.16907 0.81742 0.77086 0.86417 1.90794 1.86728 1.50312 1.13153 1.46116 1.05364 1.72378 1.10884 1.22689 0.81441 0.99379 0.94373 0.89846 1.23286 0.96312 1.00581 0.97828 1.23765 0.99607 0.87743 0.84114 0.82829 1.23050 0.97120 1.00099 0.97361 1.22918 0.97218 0.99314 0.97654 1.23180 0.86671 0.92941 0.95186 0.89585 1.46477 0.99385 1.66372 1.18789 1.19076 0.87224 1.30508 0.96765 0.90290 1.24694 0.96523 1.01522 0.98121 1.69440 1.12726 1.47495 1.27593 0.86026 0.80332 0.78135 0.80756 1.21683 1.21738 1.20791 1.73570 1.01379 1.19347 1.15248 1.43291 1.03004 1.53616 1.09729 0.71386 0.92791 0.92839 0.92711 0.91829 0.92076 0.91994 0.91657 0.90997 0.91923 0.90707 0.89043 0.82148 0.76394 0.91519 0.92658 0.93640 0.92717 0.92977 0.93157 0.93623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.91 37.16 0.37 -0.33 16 2 C -0.13 -0.63 5.93 -26.73 -0.16 -0.79 16 3 C -0.12 -0.53 5.21 -26.73 -0.14 -0.67 16 4 C -0.12 -0.62 5.20 -26.73 -0.14 -0.76 16 5 C -0.05 -0.25 5.77 -27.88 -0.16 -0.41 16 6 C 0.01 0.11 6.48 -82.21 -0.53 -0.42 16 7 C -0.18 -2.11 10.73 -39.36 -0.42 -2.53 16 8 C 0.00 -0.03 7.13 -82.76 -0.59 -0.62 16 9 C 0.60 10.36 7.82 -12.39 -0.10 10.26 16 10 O -0.53 -11.02 16.66 5.30 0.09 -10.93 16 11 N -0.70 -11.67 3.63 -52.38 -0.19 -11.86 16 12 C 0.13 2.51 3.07 -65.44 -0.20 2.31 16 13 H 0.08 1.81 7.70 -51.93 -0.40 1.41 16 14 C -0.14 -2.78 6.20 -24.23 -0.15 -2.93 16 15 C 0.15 3.57 4.72 -62.80 -0.30 3.27 16 16 H 0.15 4.03 5.52 -51.93 -0.29 3.74 16 17 C -0.14 -2.76 6.44 -24.24 -0.16 -2.91 16 18 C -0.13 -2.58 6.32 -24.24 -0.15 -2.74 16 19 C 0.13 2.83 5.35 -62.80 -0.34 2.50 16 20 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 21 N -0.59 -15.07 2.99 -145.82 -0.44 -15.51 16 22 C -0.21 -5.83 10.59 -15.06 -0.16 -5.99 16 23 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 25 N -0.92 -26.53 10.46 55.49 0.58 -25.95 16 26 Si 0.92 22.34 29.55 -169.99 -5.02 17.32 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 30 N -0.26 -3.21 11.92 33.42 0.40 -2.81 16 31 N -0.38 -3.32 6.83 33.50 0.23 -3.09 16 32 H 0.44 2.18 8.96 -190.44 -1.71 0.48 16 33 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.16 1.83 8.06 -52.49 -0.42 1.41 16 45 H 0.40 6.01 7.75 -40.82 -0.32 5.69 16 46 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 47 H 0.05 0.94 7.34 -51.93 -0.38 0.56 16 48 H 0.04 0.79 7.82 -51.93 -0.41 0.38 16 49 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 50 H 0.05 0.92 6.49 -51.93 -0.34 0.58 16 51 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 52 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 413.64 15.07 6.23 6.23 Total: -1.00 -32.60 413.64 -11.68 -44.28 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -10.14 Total: 5.55 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -3.42 Total: -3.24 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: 0.58 Total: -59.22 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.60 -11.68 -44.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109832089.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.957 kcal (2) G-P(sol) polarization free energy of solvation -32.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds