Wall clock time and date at job start Wed Apr 1 2020 06:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46915 * 2 1 4 4 C 1.53002 * 109.46915 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46933 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.46833 * 180.02562 * 5 4 3 7 7 C 1.35361 * 126.38825 * 85.00125 * 6 5 4 8 8 C 1.41509 * 105.50506 * 180.02562 * 7 6 5 9 9 C 1.47706 * 126.51750 * 179.97438 * 8 7 6 10 10 O 1.21573 * 120.00101 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99720 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99755 * 180.27918 * 11 9 8 13 13 H 1.09001 * 110.56232 * 36.95050 * 12 11 9 14 14 C 1.54855 * 110.62769 * 160.02427 * 12 11 9 15 15 C 1.55846 * 103.44609 * 118.48706 * 14 12 11 16 16 H 1.08996 * 116.12527 * 159.15097 * 15 14 12 17 17 C 1.55847 * 105.06113 * 288.17796 * 15 14 12 18 18 C 1.54848 * 103.44747 * 71.82620 * 17 15 14 19 19 C 1.55842 * 110.62546 * 274.04838 * 12 11 9 20 20 H 1.09000 * 115.56484 * 81.94351 * 19 12 11 21 21 N 1.50237 * 101.05382 * 208.57509 * 19 12 11 22 22 C 1.36936 * 130.83969 * 233.95366 * 21 19 12 23 23 H 1.07999 * 120.00101 * 359.97438 * 22 21 19 24 24 C 1.38817 * 120.00115 * 179.97438 * 22 21 19 25 25 N 1.31614 * 119.99573 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99952 * 179.97438 * 24 22 21 27 27 H 1.48490 * 109.47064 * 89.99910 * 26 24 22 28 28 H 1.48500 * 109.46843 * 210.00332 * 26 24 22 29 29 H 1.48505 * 109.47162 * 329.99575 * 26 24 22 30 30 N 1.31809 * 106.96146 * 0.23936 * 8 7 6 31 31 N 1.28467 * 110.07269 * 359.59612 * 30 8 7 32 32 H 0.97004 * 124.88322 * 180.13409 * 31 30 8 33 33 H 1.08997 * 109.46965 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.47227 * 299.99683 * 1 2 3 35 35 H 1.09001 * 109.47019 * 59.99897 * 1 2 3 36 36 H 1.09003 * 109.46744 * 240.00315 * 2 1 3 37 37 H 1.09001 * 109.47019 * 120.00103 * 2 1 3 38 38 H 1.09007 * 109.46914 * 60.00125 * 3 2 1 39 39 H 1.08993 * 109.47536 * 300.00149 * 3 2 1 40 40 H 1.08995 * 109.46926 * 60.00047 * 4 3 2 41 41 H 1.09001 * 109.47019 * 300.00103 * 4 3 2 42 42 H 1.08999 * 109.47357 * 59.99620 * 5 4 3 43 43 H 1.09001 * 109.47029 * 299.99701 * 5 4 3 44 44 H 1.07996 * 127.25189 * 0.03442 * 7 6 5 45 45 H 0.96996 * 120.00074 * 359.97438 * 11 9 8 46 46 H 1.08995 * 110.62874 * 236.97840 * 14 12 11 47 47 H 1.09002 * 110.62076 * 359.97438 * 14 12 11 48 48 H 1.09000 * 110.62908 * 313.33140 * 17 15 14 49 49 H 1.09004 * 110.62444 * 190.31584 * 17 15 14 50 50 H 1.09004 * 110.62552 * 241.50699 * 18 17 15 51 51 H 1.09004 * 110.76325 * 118.54986 * 18 17 15 52 52 H 0.97007 * 119.99909 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8851 0.0013 6 6 5.5869 2.8850 0.0013 7 6 6.3899 2.7906 -1.0843 8 6 7.7121 2.8337 -0.5817 9 6 8.9564 2.7639 -1.3744 10 8 8.9013 2.6589 -2.5844 11 7 10.1530 2.8166 -0.7563 12 6 11.3872 2.7536 -1.5431 13 1 11.2694 3.2914 -2.4838 14 6 12.5799 3.3189 -0.7332 15 6 13.5472 2.1026 -0.6159 16 1 14.5897 2.3374 -0.4008 17 6 12.8560 1.1307 0.3874 18 6 11.6634 0.5654 -0.4225 19 6 11.7963 1.2728 -1.8048 20 1 11.2861 0.7834 -2.6344 21 7 13.2887 1.4022 -1.9197 22 6 14.1487 1.0042 -2.9082 23 1 13.7675 0.5053 -3.7870 24 6 15.5104 1.2419 -2.7808 25 7 15.9748 1.8503 -1.7101 26 14 16.6835 0.6983 -4.1290 27 1 16.8377 1.7919 -5.1216 28 1 18.0064 0.3788 -3.5348 29 1 16.1390 -0.5082 -4.8023 30 7 7.6219 2.9421 0.7288 31 7 6.3880 2.9787 1.0844 32 1 6.0765 3.0578 1.9996 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3634 0.5138 0.8901 35 1 -0.3633 0.5139 -0.8900 36 1 1.8933 -0.5138 -0.8901 37 1 1.8933 -0.5139 0.8900 38 1 1.6766 1.9563 0.8901 39 1 1.6767 1.9564 -0.8899 40 1 3.9336 0.9286 -0.8891 41 1 3.9329 0.9288 0.8909 42 1 3.7162 3.3987 0.8912 43 1 3.7170 3.3991 -0.8887 44 1 6.0858 2.7013 -2.1167 45 1 10.1970 2.9007 0.2090 46 1 13.0563 4.1378 -1.2721 47 1 12.2529 3.6465 0.2537 48 1 12.5022 1.6722 1.2647 49 1 13.5368 0.3304 0.6776 50 1 10.7181 0.8266 0.0531 51 1 11.7500 -0.5154 -0.5344 52 1 16.9263 2.0168 -1.6212 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109832089.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:36:40 Heat of formation + Delta-G solvation = 40.592685 kcal Electronic energy + Delta-G solvation = -30121.452082 eV Core-core repulsion = 26122.084195 eV Total energy + Delta-G solvation = -3999.367887 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 6.89 seconds Orbital eigenvalues (eV) -43.68215 -41.39533 -39.61414 -37.25116 -35.49622 -34.35491 -34.05930 -32.86828 -31.03458 -30.96281 -30.62999 -29.22870 -27.14085 -26.31551 -24.99017 -23.35672 -22.78057 -21.97437 -21.79532 -21.65307 -20.90614 -20.15456 -18.92695 -18.58918 -17.87196 -16.90892 -16.83557 -16.75335 -16.57366 -16.31682 -15.82119 -15.20031 -15.16804 -15.03701 -14.87544 -14.42686 -14.17945 -14.08834 -13.96486 -13.65993 -13.48680 -13.22026 -12.89089 -12.87799 -12.77496 -12.62970 -12.62772 -12.39901 -12.04665 -11.99450 -11.90497 -11.80627 -11.70491 -11.59425 -11.56992 -11.33069 -11.29812 -11.09353 -10.99206 -10.79606 -10.44378 -9.97604 -9.90852 -8.86214 -7.78802 -5.18363 0.53116 1.12618 1.47015 1.48681 1.56711 1.88556 2.25505 2.38631 2.51633 3.33801 3.37496 3.52776 3.64471 3.90334 3.99409 4.02818 4.09045 4.13367 4.18420 4.29520 4.36152 4.41870 4.46786 4.56125 4.59467 4.60502 4.63325 4.71346 4.79202 4.80061 4.92121 4.94275 4.96046 5.04697 5.06096 5.07849 5.13851 5.20103 5.21782 5.27389 5.31778 5.34783 5.39399 5.44194 5.50391 5.54161 5.56986 5.71702 5.88649 6.12911 6.27073 6.53729 6.90638 7.05908 7.22858 7.69150 8.55592 9.28297 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022305 B = 0.001876 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.996206 B =14921.601973 C =15326.705821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.130 4.130 3 C -0.115 4.115 4 C -0.114 4.114 5 C -0.045 4.045 6 C 0.040 3.960 7 C -0.200 4.200 8 C -0.032 4.032 9 C 0.595 3.405 10 O -0.576 6.576 11 N -0.686 5.686 12 C 0.145 3.855 13 H 0.058 0.942 14 C -0.126 4.126 15 C 0.141 3.859 16 H 0.124 0.876 17 C -0.125 4.125 18 C -0.117 4.117 19 C 0.120 3.880 20 H 0.068 0.932 21 N -0.616 5.616 22 C -0.225 4.225 23 H 0.072 0.928 24 C -0.063 4.063 25 N -0.944 5.944 26 Si 0.977 3.023 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.276 1.276 30 N -0.263 5.263 31 N -0.360 5.360 32 H 0.462 0.538 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.157 0.843 45 H 0.414 0.586 46 H 0.051 0.949 47 H 0.093 0.907 48 H 0.083 0.917 49 H 0.037 0.963 50 H 0.079 0.921 51 H 0.042 0.958 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.521 2.699 11.830 32.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.168 4.168 3 C -0.152 4.152 4 C -0.152 4.152 5 C -0.083 4.083 6 C -0.087 4.087 7 C -0.228 4.228 8 C -0.191 4.191 9 C 0.381 3.619 10 O -0.454 6.454 11 N -0.337 5.337 12 C 0.038 3.962 13 H 0.076 0.924 14 C -0.165 4.165 15 C 0.035 3.965 16 H 0.141 0.859 17 C -0.164 4.164 18 C -0.157 4.157 19 C 0.012 3.988 20 H 0.086 0.914 21 N -0.338 5.338 22 C -0.354 4.354 23 H 0.090 0.910 24 C -0.256 4.256 25 N -0.593 5.593 26 Si 0.806 3.194 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.202 1.202 30 N -0.101 5.101 31 N -0.078 5.078 32 H 0.310 0.690 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.175 0.825 45 H 0.251 0.749 46 H 0.070 0.930 47 H 0.111 0.889 48 H 0.102 0.898 49 H 0.056 0.944 50 H 0.097 0.903 51 H 0.061 0.939 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -29.559 2.656 11.755 31.921 hybrid contribution 0.551 -0.441 -0.985 1.212 sum -29.008 2.216 10.770 31.022 Atomic orbital electron populations 1.21781 0.95569 1.01677 1.02060 1.21561 0.96161 0.97287 1.01744 1.21586 0.94014 0.96679 1.02965 1.21585 0.96052 0.95258 1.02336 1.20331 0.83535 0.98580 1.05899 1.21736 0.96258 1.04596 0.86108 1.21658 0.90269 1.10080 1.00832 1.21698 0.94768 1.12061 0.90580 1.17315 0.82625 0.75775 0.86184 1.90768 1.87417 1.52044 1.15134 1.45863 1.04286 1.72391 1.11158 1.22185 0.82775 0.97355 0.93917 0.92420 1.23122 0.95184 0.98684 0.99533 1.23691 0.99169 0.89626 0.84054 0.85851 1.22942 0.96500 0.99143 0.97850 1.22804 0.98271 0.98552 0.96039 1.23284 0.84935 0.94560 0.96003 0.91358 1.46720 1.00717 1.67067 1.19300 1.19316 0.88209 1.30501 0.97410 0.91037 1.25426 0.97774 1.02120 1.00265 1.69661 1.12539 1.48303 1.28804 0.85086 0.78197 0.77750 0.78329 1.21582 1.21667 1.20175 1.73479 1.03102 1.19420 1.14057 1.43393 1.02026 1.51451 1.10883 0.69005 0.92984 0.92270 0.92641 0.92743 0.92213 0.90725 0.91404 0.92604 0.91888 0.87754 0.88150 0.82519 0.74866 0.93043 0.88885 0.89808 0.94370 0.90308 0.93892 0.94088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 71.98 0.71 -0.43 16 2 C -0.13 -1.08 5.93 30.60 0.18 -0.89 16 3 C -0.11 -0.71 5.21 30.60 0.16 -0.55 16 4 C -0.11 -0.90 5.20 30.60 0.16 -0.74 16 5 C -0.04 -0.30 5.77 29.85 0.17 -0.13 16 6 C 0.04 0.57 6.48 41.40 0.27 0.84 16 7 C -0.20 -4.57 10.73 22.41 0.24 -4.32 16 8 C -0.03 -0.87 7.13 42.46 0.30 -0.57 16 9 C 0.60 20.61 7.82 86.74 0.68 21.29 16 10 O -0.58 -24.42 16.66 -3.95 -0.07 -24.48 16 11 N -0.69 -22.23 3.63 -437.89 -1.59 -23.82 16 12 C 0.14 5.74 3.07 46.61 0.14 5.89 16 13 H 0.06 2.60 7.70 -2.39 -0.02 2.58 16 14 C -0.13 -4.90 6.20 32.21 0.20 -4.70 16 15 C 0.14 6.54 4.72 46.23 0.22 6.76 16 16 H 0.12 6.63 5.52 -2.39 -0.01 6.61 16 17 C -0.13 -4.87 6.44 32.21 0.21 -4.67 16 18 C -0.12 -4.49 6.32 32.21 0.20 -4.28 16 19 C 0.12 5.37 5.35 46.23 0.25 5.62 16 20 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 21 N -0.62 -32.37 2.99 -615.25 -1.84 -34.21 16 22 C -0.23 -13.08 10.59 84.03 0.89 -12.19 16 23 H 0.07 4.11 7.83 -2.91 -0.02 4.08 16 24 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 25 N -0.94 -55.58 10.46 21.65 0.23 -55.35 16 26 Si 0.98 46.95 29.55 68.60 2.03 48.98 16 27 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 28 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 29 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 30 N -0.26 -5.80 11.92 -48.17 -0.57 -6.38 16 31 N -0.36 -5.00 6.83 -47.93 -0.33 -5.33 16 32 H 0.46 2.54 8.96 -219.99 -1.97 0.56 16 33 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 35 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.07 0.30 8.14 -2.38 -0.02 0.28 16 39 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 43 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.16 3.58 8.06 -2.91 -0.02 3.55 16 45 H 0.41 11.31 7.75 -92.71 -0.72 10.59 16 46 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.09 2.90 7.34 -2.39 -0.02 2.88 16 48 H 0.08 2.62 7.82 -2.39 -0.02 2.60 16 49 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 50 H 0.08 2.59 6.49 -2.39 -0.02 2.57 16 51 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 52 H 0.25 14.26 8.31 -92.70 -0.77 13.49 16 Total: -1.00 -73.90 413.64 1.55 -72.34 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: -1.76 Total: 24.48 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 5.45 Total: 3.76 kcal Atomic # 7 Polarization: -120.98 SS G_CDS: -4.10 Total: -125.08 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.07 Total: -24.48 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -73.90 1.55 -72.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109832089.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.935 kcal (2) G-P(sol) polarization free energy of solvation -73.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.89 seconds