Wall clock time and date at job start Wed Apr 1 2020 04:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.47293 * 2 1 4 4 N 1.30501 * 125.65036 * 270.17306 * 3 2 1 5 5 C 1.34128 * 109.25837 * 180.29170 * 4 3 2 6 6 C 1.34672 * 108.01547 * 359.72716 * 5 4 3 7 7 N 1.35044 * 125.65107 * 90.00033 * 3 2 1 8 8 C 1.46498 * 126.39541 * 359.97213 * 7 3 2 9 9 H 1.08992 * 109.47311 * 359.71921 * 8 7 3 10 10 C 1.52997 * 109.47148 * 239.71304 * 8 7 3 11 11 C 1.53006 * 109.46687 * 119.71678 * 8 7 3 12 12 C 1.50699 * 109.46866 * 184.99905 * 11 8 7 13 13 O 1.21282 * 120.00040 * 359.97438 * 12 11 8 14 14 N 1.34779 * 120.00033 * 180.02562 * 12 11 8 15 15 C 1.46500 * 120.00165 * 179.97438 * 14 12 11 16 16 H 1.08997 * 110.55753 * 32.09626 * 15 14 12 17 17 C 1.54853 * 110.62651 * 269.02600 * 15 14 12 18 18 C 1.55850 * 103.44368 * 241.50948 * 17 15 14 19 19 H 1.08996 * 116.12621 * 159.14782 * 18 17 15 20 20 C 1.55847 * 105.06136 * 288.17420 * 18 17 15 21 21 C 1.54853 * 103.44586 * 71.82738 * 20 18 17 22 22 C 1.55838 * 110.62691 * 154.99396 * 15 14 12 23 23 H 1.08996 * 115.56766 * 319.68470 * 22 15 14 24 24 N 1.50232 * 101.04794 * 32.93587 * 18 17 15 25 25 C 1.36942 * 130.83568 * 126.01467 * 24 18 17 26 26 H 1.08001 * 119.99713 * 180.02562 * 25 24 18 27 27 C 1.38804 * 120.00143 * 0.02562 * 25 24 18 28 28 N 1.31625 * 119.99990 * 0.02562 * 27 25 24 29 29 Si 1.86804 * 120.00151 * 180.02562 * 27 25 24 30 30 H 1.48494 * 109.47127 * 59.99868 * 29 27 25 31 31 H 1.48504 * 109.47085 * 180.02562 * 29 27 25 32 32 H 1.48504 * 109.47139 * 300.00079 * 29 27 25 33 33 H 1.08995 * 109.47515 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47181 * 300.00545 * 1 2 3 35 35 H 1.08998 * 109.46618 * 59.99856 * 1 2 3 36 36 H 1.08996 * 109.47204 * 239.99804 * 2 1 3 37 37 H 1.09005 * 109.46987 * 119.99994 * 2 1 3 38 38 H 1.07998 * 125.99019 * 179.72119 * 5 4 3 39 39 H 1.08001 * 126.58430 * 179.97438 * 6 5 4 40 40 H 1.08992 * 109.47518 * 300.00491 * 10 8 7 41 41 H 1.09002 * 109.46905 * 60.00526 * 10 8 7 42 42 H 1.09004 * 109.47446 * 180.02562 * 10 8 7 43 43 H 1.08993 * 109.46955 * 305.00124 * 11 8 7 44 44 H 1.09000 * 109.47050 * 64.99953 * 11 8 7 45 45 H 0.96996 * 119.99850 * 359.97438 * 14 12 11 46 46 H 1.09002 * 110.62554 * 359.97438 * 17 15 14 47 47 H 1.09000 * 110.62934 * 123.01857 * 17 15 14 48 48 H 1.08999 * 110.62385 * 190.31204 * 20 18 17 49 49 H 1.08998 * 110.62411 * 313.17630 * 20 18 17 50 50 H 1.09006 * 110.62471 * 241.50739 * 21 20 18 51 51 H 1.08994 * 110.62747 * 118.48779 * 21 20 18 52 52 H 0.97001 * 119.99683 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2830 2.1390 -1.0604 5 6 2.7191 3.3496 -0.6819 6 6 2.7338 3.3849 0.6642 7 7 2.2948 2.1629 1.0973 8 6 2.1437 1.7373 2.4910 9 1 1.7754 0.7119 2.5199 10 6 1.1479 2.6573 3.2000 11 6 3.4992 1.8124 3.1968 12 6 3.3698 1.2595 4.5928 13 8 2.2989 0.8465 4.9846 14 7 4.4440 1.2248 5.4061 15 6 4.3182 0.6878 6.7633 16 1 3.5703 -0.1045 6.7936 17 6 3.9649 1.8146 7.7652 18 6 5.1751 1.8187 8.7472 19 1 5.3272 2.7349 9.3177 20 6 5.0152 0.5190 9.5923 21 6 5.3685 -0.6077 8.5905 22 6 5.6935 0.1646 7.2764 23 1 6.2971 -0.3695 6.5426 24 7 6.2951 1.4270 7.8257 25 6 7.4948 2.0340 7.5659 26 1 8.1811 1.5929 6.8582 27 6 7.8288 3.2161 8.2122 28 7 6.9926 3.7534 9.0752 29 14 9.4651 4.0445 7.8574 30 1 9.5426 4.3899 6.4152 31 1 9.5799 5.2821 8.6702 32 1 10.5738 3.1198 8.2052 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3634 0.5139 0.8900 35 1 -0.3632 0.5139 -0.8900 36 1 1.8934 -0.5138 -0.8899 37 1 1.8934 -0.5139 0.8900 38 1 3.0078 4.1548 -1.3412 39 1 3.0346 4.2173 1.2831 40 1 1.5162 3.6827 3.1711 41 1 0.1823 2.6038 2.6972 42 1 1.0358 2.3410 4.2371 43 1 4.2313 1.2272 2.6406 44 1 3.8261 2.8510 3.2463 45 1 5.3004 1.5554 5.0928 46 1 3.8839 2.7729 7.2523 47 1 3.0413 1.5817 8.2950 48 1 5.7110 0.5187 10.4314 49 1 3.9894 0.4145 9.9456 50 1 4.5170 -1.2725 8.4446 51 1 6.2392 -1.1667 8.9327 52 1 7.2263 4.5793 9.5271 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110577667.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:13 Heat of formation + Delta-G solvation = 57.981561 kcal Electronic energy + Delta-G solvation = -31327.470327 eV Core-core repulsion = 27328.856478 eV Total energy + Delta-G solvation = -3998.613849 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -42.30691 -40.02405 -38.70277 -35.75411 -33.99817 -33.92586 -32.61926 -31.00080 -29.23995 -29.16778 -28.74667 -28.46013 -27.13086 -24.31616 -24.08746 -23.31545 -21.72091 -20.94817 -19.99916 -19.79221 -19.37254 -18.71044 -17.58060 -17.09823 -16.41124 -16.07663 -15.53481 -15.28326 -14.98493 -14.86335 -14.41452 -14.25586 -14.06559 -13.78944 -13.66344 -13.54402 -13.36321 -13.09773 -12.80865 -12.50280 -12.17529 -12.10087 -11.88182 -11.83859 -11.67358 -11.46450 -11.29724 -11.23803 -11.20735 -11.02362 -10.95719 -10.61373 -10.44222 -10.19475 -10.11564 -9.99361 -9.81995 -9.70112 -9.32349 -9.23821 -9.04878 -8.59298 -8.45174 -7.03890 -5.82895 -3.22491 1.94495 2.53962 2.74735 3.06186 3.30275 3.35449 3.36861 3.50984 4.23746 4.27881 4.33113 4.52360 4.59982 4.80994 4.91086 5.02420 5.03043 5.06448 5.18471 5.25073 5.27726 5.30832 5.41637 5.48722 5.55247 5.56456 5.60967 5.61678 5.69721 5.79679 5.80309 5.93841 5.96638 6.00180 6.03755 6.06657 6.21072 6.27459 6.33597 6.39833 6.52448 6.65279 6.68530 6.73566 6.86303 7.00450 7.09639 7.22823 7.38247 7.70537 7.82196 8.02625 8.08562 8.41784 8.98674 9.62065 10.42539 11.25888 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013260 B = 0.002713 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.122447 B =10319.361856 C =11615.177002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.040 4.040 3 C 0.207 3.793 4 N -0.494 5.494 5 C -0.033 4.033 6 C -0.054 4.054 7 N -0.447 5.447 8 C 0.149 3.851 9 H 0.110 0.890 10 C -0.164 4.164 11 C -0.154 4.154 12 C 0.516 3.484 13 O -0.551 6.551 14 N -0.701 5.701 15 C 0.128 3.872 16 H 0.081 0.919 17 C -0.142 4.142 18 C 0.154 3.846 19 H 0.153 0.847 20 C -0.139 4.139 21 C -0.127 4.127 22 C 0.125 3.875 23 H 0.087 0.913 24 N -0.590 5.590 25 C -0.218 4.218 26 H 0.078 0.922 27 C -0.008 4.008 28 N -0.919 5.919 29 Si 0.915 3.085 30 H -0.286 1.286 31 H -0.290 1.290 32 H -0.286 1.286 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.167 0.833 39 H 0.171 0.829 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.404 0.596 46 H 0.058 0.942 47 H 0.053 0.947 48 H 0.055 0.945 49 H 0.048 0.952 50 H 0.051 0.949 51 H 0.057 0.943 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.161 -5.161 -11.906 16.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.079 4.079 3 C -0.055 4.055 4 N -0.213 5.213 5 C -0.181 4.181 6 C -0.187 4.187 7 N -0.130 5.130 8 C 0.046 3.954 9 H 0.128 0.872 10 C -0.222 4.222 11 C -0.195 4.195 12 C 0.301 3.699 13 O -0.430 6.430 14 N -0.349 5.349 15 C 0.021 3.979 16 H 0.099 0.901 17 C -0.182 4.182 18 C 0.047 3.953 19 H 0.170 0.830 20 C -0.179 4.179 21 C -0.167 4.167 22 C 0.016 3.984 23 H 0.105 0.895 24 N -0.311 5.311 25 C -0.345 4.345 26 H 0.095 0.905 27 C -0.204 4.204 28 N -0.567 5.567 29 Si 0.746 3.254 30 H -0.213 1.213 31 H -0.216 1.216 32 H -0.212 1.212 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.185 0.815 39 H 0.188 0.812 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.119 0.881 45 H 0.239 0.761 46 H 0.077 0.923 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.067 0.933 50 H 0.070 0.930 51 H 0.076 0.924 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.769 -5.492 -12.227 17.194 hybrid contribution 1.555 1.097 0.537 1.977 sum -9.215 -4.395 -11.689 15.520 Atomic orbital electron populations 1.21740 0.93946 1.02272 1.02510 1.19974 0.96488 0.87532 1.03950 1.23248 1.04267 0.96586 0.81421 1.70219 1.18408 1.04319 1.28313 1.22244 1.06697 0.96343 0.92769 1.22647 1.09023 0.90261 0.96737 1.45638 1.48418 1.11747 1.07180 1.21162 0.95626 1.01383 0.77279 0.87193 1.22271 0.97978 0.98825 1.03127 1.22006 0.98291 1.04373 0.94786 1.20099 0.84513 0.78893 0.86408 1.90649 1.26967 1.48728 1.76696 1.46024 1.12020 1.62287 1.14606 1.22677 0.99132 0.96109 0.79939 0.90116 1.23436 0.99048 0.97506 0.98205 1.23763 0.83842 0.97614 0.90087 0.83011 1.23071 0.98809 0.97781 0.98228 1.22869 0.99569 0.97219 0.97058 1.23174 0.91199 0.89649 0.94393 0.89472 1.46533 1.16300 1.21772 1.46521 1.18950 0.92060 1.03277 1.20260 0.90468 1.24700 0.98541 0.97976 0.99211 1.69449 1.35418 1.21165 1.30629 0.86149 0.83028 0.78774 0.77484 1.21256 1.21570 1.21244 0.91604 0.92723 0.91951 0.88795 0.90385 0.81541 0.81154 0.92246 0.92156 0.88158 0.88413 0.88112 0.76118 0.92283 0.92790 0.92621 0.93307 0.92998 0.92419 0.93427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.90 37.16 0.37 -0.81 16 2 C -0.04 -0.36 6.08 -27.88 -0.17 -0.53 16 3 C 0.21 2.45 7.16 -155.41 -1.11 1.34 16 4 N -0.49 -6.70 11.25 -10.81 -0.12 -6.82 16 5 C -0.03 -0.39 11.87 -17.81 -0.21 -0.60 16 6 C -0.05 -0.58 10.70 -16.56 -0.18 -0.76 16 7 N -0.45 -4.94 2.61 -106.83 -0.28 -5.22 16 8 C 0.15 1.57 2.64 -67.93 -0.18 1.39 16 9 H 0.11 1.17 6.49 -51.93 -0.34 0.83 16 10 C -0.16 -1.76 8.99 37.16 0.33 -1.43 16 11 C -0.15 -1.66 5.18 -27.88 -0.14 -1.80 16 12 C 0.52 7.22 7.55 -10.99 -0.08 7.14 16 13 O -0.55 -8.99 13.61 5.56 0.08 -8.92 16 14 N -0.70 -10.67 5.07 -51.40 -0.26 -10.93 16 15 C 0.13 2.18 2.80 -65.44 -0.18 2.00 16 16 H 0.08 1.38 7.23 -51.93 -0.38 1.01 16 17 C -0.14 -2.70 6.23 -24.23 -0.15 -2.85 16 18 C 0.15 3.32 4.72 -62.80 -0.30 3.03 16 19 H 0.15 3.82 5.52 -51.93 -0.29 3.53 16 20 C -0.14 -2.63 6.44 -24.23 -0.16 -2.79 16 21 C -0.13 -2.19 6.44 -24.23 -0.16 -2.35 16 22 C 0.12 2.27 5.06 -62.80 -0.32 1.96 16 23 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 24 N -0.59 -13.27 2.99 -145.82 -0.44 -13.71 16 25 C -0.22 -5.46 10.59 -15.06 -0.16 -5.62 16 26 H 0.08 1.87 7.83 -52.49 -0.41 1.46 16 27 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 28 N -0.92 -24.93 10.47 55.49 0.58 -24.35 16 29 Si 0.92 20.78 29.55 -169.99 -5.02 15.76 16 30 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 31 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 32 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.63 7.09 -51.93 -0.37 0.26 16 38 H 0.17 1.58 8.06 -52.49 -0.42 1.15 16 39 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.06 0.60 7.95 -51.93 -0.41 0.19 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.10 1.26 5.95 -51.93 -0.31 0.95 16 43 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.10 1.03 8.09 -51.93 -0.42 0.61 16 45 H 0.40 6.07 8.66 -40.82 -0.35 5.72 16 46 H 0.06 1.22 7.98 -51.93 -0.41 0.80 16 47 H 0.05 0.96 7.82 -51.93 -0.41 0.56 16 48 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.05 0.82 7.82 -51.93 -0.41 0.42 16 50 H 0.05 0.78 7.82 -51.93 -0.41 0.38 16 51 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 52 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 408.62 15.07 6.16 6.16 Total: -1.00 -29.54 408.62 -10.89 -40.43 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -8.69 Total: 10.59 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -2.89 Total: -3.00 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: -0.52 Total: -61.03 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.08 Total: -8.92 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -29.54 -10.89 -40.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110577667.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.413 kcal (2) G-P(sol) polarization free energy of solvation -29.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds