Wall clock time and date at job start Wed Apr 1 2020 04:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.47293 * 2 1 4 4 N 1.30501 * 125.65036 * 270.17306 * 3 2 1 5 5 C 1.34128 * 109.25837 * 180.29170 * 4 3 2 6 6 C 1.34672 * 108.01547 * 359.72716 * 5 4 3 7 7 N 1.35044 * 125.65107 * 90.00033 * 3 2 1 8 8 C 1.46498 * 126.39541 * 359.97213 * 7 3 2 9 9 H 1.08992 * 109.47311 * 359.71921 * 8 7 3 10 10 C 1.52997 * 109.47148 * 239.71304 * 8 7 3 11 11 C 1.53006 * 109.46687 * 119.71678 * 8 7 3 12 12 C 1.50699 * 109.46866 * 184.99905 * 11 8 7 13 13 O 1.21282 * 120.00040 * 359.97438 * 12 11 8 14 14 N 1.34779 * 120.00033 * 180.02562 * 12 11 8 15 15 C 1.46500 * 120.00165 * 179.97438 * 14 12 11 16 16 H 1.08997 * 110.55753 * 32.09626 * 15 14 12 17 17 C 1.54853 * 110.62651 * 269.02600 * 15 14 12 18 18 C 1.55850 * 103.44368 * 241.50948 * 17 15 14 19 19 H 1.08996 * 116.12621 * 159.14782 * 18 17 15 20 20 C 1.55847 * 105.06136 * 288.17420 * 18 17 15 21 21 C 1.54853 * 103.44586 * 71.82738 * 20 18 17 22 22 C 1.55838 * 110.62691 * 154.99396 * 15 14 12 23 23 H 1.08996 * 115.56766 * 319.68470 * 22 15 14 24 24 N 1.50232 * 101.04794 * 32.93587 * 18 17 15 25 25 C 1.36942 * 130.83568 * 126.01467 * 24 18 17 26 26 H 1.08001 * 119.99713 * 180.02562 * 25 24 18 27 27 C 1.38804 * 120.00143 * 0.02562 * 25 24 18 28 28 N 1.31625 * 119.99990 * 0.02562 * 27 25 24 29 29 Si 1.86804 * 120.00151 * 180.02562 * 27 25 24 30 30 H 1.48494 * 109.47127 * 59.99868 * 29 27 25 31 31 H 1.48504 * 109.47085 * 180.02562 * 29 27 25 32 32 H 1.48504 * 109.47139 * 300.00079 * 29 27 25 33 33 H 1.08995 * 109.47515 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47181 * 300.00545 * 1 2 3 35 35 H 1.08998 * 109.46618 * 59.99856 * 1 2 3 36 36 H 1.08996 * 109.47204 * 239.99804 * 2 1 3 37 37 H 1.09005 * 109.46987 * 119.99994 * 2 1 3 38 38 H 1.07998 * 125.99019 * 179.72119 * 5 4 3 39 39 H 1.08001 * 126.58430 * 179.97438 * 6 5 4 40 40 H 1.08992 * 109.47518 * 300.00491 * 10 8 7 41 41 H 1.09002 * 109.46905 * 60.00526 * 10 8 7 42 42 H 1.09004 * 109.47446 * 180.02562 * 10 8 7 43 43 H 1.08993 * 109.46955 * 305.00124 * 11 8 7 44 44 H 1.09000 * 109.47050 * 64.99953 * 11 8 7 45 45 H 0.96996 * 119.99850 * 359.97438 * 14 12 11 46 46 H 1.09002 * 110.62554 * 359.97438 * 17 15 14 47 47 H 1.09000 * 110.62934 * 123.01857 * 17 15 14 48 48 H 1.08999 * 110.62385 * 190.31204 * 20 18 17 49 49 H 1.08998 * 110.62411 * 313.17630 * 20 18 17 50 50 H 1.09006 * 110.62471 * 241.50739 * 21 20 18 51 51 H 1.08994 * 110.62747 * 118.48779 * 21 20 18 52 52 H 0.97001 * 119.99683 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2830 2.1390 -1.0604 5 6 2.7191 3.3496 -0.6819 6 6 2.7338 3.3849 0.6642 7 7 2.2948 2.1629 1.0973 8 6 2.1437 1.7373 2.4910 9 1 1.7754 0.7119 2.5199 10 6 1.1479 2.6573 3.2000 11 6 3.4992 1.8124 3.1968 12 6 3.3698 1.2595 4.5928 13 8 2.2989 0.8465 4.9846 14 7 4.4440 1.2248 5.4061 15 6 4.3182 0.6878 6.7633 16 1 3.5703 -0.1045 6.7936 17 6 3.9649 1.8146 7.7652 18 6 5.1751 1.8187 8.7472 19 1 5.3272 2.7349 9.3177 20 6 5.0152 0.5190 9.5923 21 6 5.3685 -0.6077 8.5905 22 6 5.6935 0.1646 7.2764 23 1 6.2971 -0.3695 6.5426 24 7 6.2951 1.4270 7.8257 25 6 7.4948 2.0340 7.5659 26 1 8.1811 1.5929 6.8582 27 6 7.8288 3.2161 8.2122 28 7 6.9926 3.7534 9.0752 29 14 9.4651 4.0445 7.8574 30 1 9.5426 4.3899 6.4152 31 1 9.5799 5.2821 8.6702 32 1 10.5738 3.1198 8.2052 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3634 0.5139 0.8900 35 1 -0.3632 0.5139 -0.8900 36 1 1.8934 -0.5138 -0.8899 37 1 1.8934 -0.5139 0.8900 38 1 3.0078 4.1548 -1.3412 39 1 3.0346 4.2173 1.2831 40 1 1.5162 3.6827 3.1711 41 1 0.1823 2.6038 2.6972 42 1 1.0358 2.3410 4.2371 43 1 4.2313 1.2272 2.6406 44 1 3.8261 2.8510 3.2463 45 1 5.3004 1.5554 5.0928 46 1 3.8839 2.7729 7.2523 47 1 3.0413 1.5817 8.2950 48 1 5.7110 0.5187 10.4314 49 1 3.9894 0.4145 9.9456 50 1 4.5170 -1.2725 8.4446 51 1 6.2392 -1.1667 8.9327 52 1 7.2263 4.5793 9.5271 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110577667.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:11 Heat of formation + Delta-G solvation = 42.910291 kcal Electronic energy + Delta-G solvation = -31328.123866 eV Core-core repulsion = 27328.856478 eV Total energy + Delta-G solvation = -3999.267388 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.16024 -41.33607 -40.05399 -36.69940 -35.26268 -34.69640 -34.40696 -31.93849 -30.96166 -30.52675 -29.79863 -29.53714 -28.33344 -26.10265 -24.85126 -24.22232 -22.92239 -21.97719 -21.51151 -21.06902 -20.33193 -20.11811 -18.83664 -18.50108 -17.48848 -17.28052 -16.76932 -16.47481 -16.27080 -15.83804 -15.73060 -15.45998 -15.23728 -14.98542 -14.62027 -14.55164 -14.36530 -14.11848 -13.91435 -13.70471 -13.63864 -13.23727 -13.07237 -12.88881 -12.79042 -12.77725 -12.61888 -12.51463 -12.50738 -12.21864 -12.09615 -11.98157 -11.95843 -11.89175 -11.68345 -11.22105 -11.01502 -10.93225 -10.88091 -10.69094 -10.52350 -9.91919 -9.29387 -8.85751 -7.75288 -5.14809 1.10092 1.49631 1.50865 1.56562 1.60361 1.68886 2.18525 2.40189 2.50856 3.38024 3.40236 3.46724 3.49650 3.65212 3.76638 3.92074 4.02394 4.09054 4.11030 4.24072 4.28951 4.36700 4.39480 4.47037 4.47767 4.50426 4.51189 4.64912 4.66790 4.68953 4.72670 4.78716 4.84616 4.85911 4.93031 4.99611 5.08782 5.10058 5.15623 5.19436 5.22229 5.29301 5.39399 5.43295 5.53171 5.61969 5.73396 5.85824 5.91451 6.26035 6.29045 6.63219 7.06967 7.16669 7.26162 7.73852 8.59411 9.31568 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013260 B = 0.002713 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.122447 B =10319.361856 C =11615.177002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.042 4.042 3 C 0.198 3.802 4 N -0.527 5.527 5 C -0.052 4.052 6 C -0.054 4.054 7 N -0.447 5.447 8 C 0.155 3.845 9 H 0.112 0.888 10 C -0.159 4.159 11 C -0.143 4.143 12 C 0.519 3.481 13 O -0.571 6.571 14 N -0.704 5.704 15 C 0.142 3.858 16 H 0.091 0.909 17 C -0.131 4.131 18 C 0.138 3.862 19 H 0.114 0.886 20 C -0.133 4.133 21 C -0.119 4.119 22 C 0.125 3.875 23 H 0.101 0.899 24 N -0.610 5.610 25 C -0.214 4.214 26 H 0.085 0.915 27 C -0.065 4.065 28 N -0.947 5.947 29 Si 0.971 3.029 30 H -0.278 1.278 31 H -0.302 1.302 32 H -0.284 1.284 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.182 0.818 39 H 0.192 0.808 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.082 0.918 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.406 0.594 46 H 0.036 0.964 47 H 0.066 0.934 48 H 0.035 0.965 49 H 0.071 0.929 50 H 0.083 0.917 51 H 0.056 0.944 52 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.512 -6.654 -13.132 18.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.080 4.080 3 C -0.064 4.064 4 N -0.247 5.247 5 C -0.199 4.199 6 C -0.187 4.187 7 N -0.129 5.129 8 C 0.052 3.948 9 H 0.130 0.870 10 C -0.216 4.216 11 C -0.184 4.184 12 C 0.306 3.694 13 O -0.452 6.452 14 N -0.353 5.353 15 C 0.035 3.965 16 H 0.109 0.891 17 C -0.171 4.171 18 C 0.032 3.968 19 H 0.131 0.869 20 C -0.173 4.173 21 C -0.159 4.159 22 C 0.018 3.982 23 H 0.119 0.881 24 N -0.331 5.331 25 C -0.343 4.343 26 H 0.102 0.898 27 C -0.258 4.258 28 N -0.597 5.597 29 Si 0.801 3.199 30 H -0.204 1.204 31 H -0.229 1.229 32 H -0.211 1.211 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.199 0.801 39 H 0.209 0.791 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.241 0.759 46 H 0.055 0.945 47 H 0.084 0.916 48 H 0.054 0.946 49 H 0.089 0.911 50 H 0.101 0.899 51 H 0.075 0.925 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -11.131 -7.014 -13.484 18.839 hybrid contribution 1.609 1.536 0.904 2.401 sum -9.523 -5.478 -12.580 16.702 Atomic orbital electron populations 1.21699 0.93283 1.03290 1.01653 1.20107 0.96993 0.86218 1.04731 1.23742 1.03874 0.97476 0.81293 1.70207 1.19639 1.05350 1.29468 1.22625 1.07076 0.96467 0.93709 1.23007 1.08278 0.90628 0.96750 1.45656 1.48348 1.11811 1.07091 1.21087 0.95332 1.01406 0.76984 0.87041 1.22181 0.98344 0.99092 1.02007 1.21935 0.98837 1.04913 0.92680 1.20517 0.83630 0.78050 0.87196 1.90649 1.27653 1.49540 1.77356 1.45993 1.12576 1.62612 1.14076 1.22414 0.98377 0.95304 0.80423 0.89143 1.23284 0.98415 0.97327 0.98095 1.23589 0.84864 0.97435 0.90923 0.86900 1.22976 0.99657 0.97022 0.97625 1.22829 1.00805 0.96734 0.95512 1.23386 0.91453 0.88209 0.95135 0.88065 1.46706 1.15897 1.23351 1.47178 1.19297 0.92940 1.02904 1.19154 0.89768 1.25379 1.01225 0.99168 1.00010 1.69710 1.36742 1.21193 1.32052 0.85254 0.80067 0.77288 0.77295 1.20403 1.22887 1.21069 0.89662 0.93289 0.93023 0.88361 0.89201 0.80092 0.79097 0.91738 0.91857 0.89886 0.87008 0.87138 0.75918 0.94516 0.91550 0.94648 0.91078 0.89899 0.92482 0.94563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.90 71.98 0.71 -1.34 16 2 C -0.04 -0.68 6.08 29.85 0.18 -0.50 16 3 C 0.20 4.42 7.16 138.13 0.99 5.41 16 4 N -0.53 -13.81 11.25 -188.13 -2.12 -15.93 16 5 C -0.05 -1.16 11.87 83.52 0.99 -0.17 16 6 C -0.05 -1.06 10.70 83.09 0.89 -0.17 16 7 N -0.45 -9.01 2.61 -491.91 -1.28 -10.29 16 8 C 0.15 2.93 2.64 44.99 0.12 3.05 16 9 H 0.11 2.12 6.49 -2.39 -0.02 2.10 16 10 C -0.16 -3.14 8.99 71.98 0.65 -2.50 16 11 C -0.14 -2.73 5.18 29.85 0.15 -2.57 16 12 C 0.52 13.39 7.55 87.66 0.66 14.05 16 13 O -0.57 -17.46 13.61 -3.04 -0.04 -17.50 16 14 N -0.70 -19.98 5.07 -434.92 -2.21 -22.18 16 15 C 0.14 4.53 2.80 46.61 0.13 4.66 16 16 H 0.09 2.79 7.23 -2.39 -0.02 2.78 16 17 C -0.13 -4.87 6.23 32.21 0.20 -4.67 16 18 C 0.14 6.02 4.72 46.23 0.22 6.23 16 19 H 0.11 5.91 5.52 -2.39 -0.01 5.90 16 20 C -0.13 -4.90 6.44 32.21 0.21 -4.69 16 21 C -0.12 -3.78 6.44 32.21 0.21 -3.58 16 22 C 0.13 4.30 5.06 46.23 0.23 4.53 16 23 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 24 N -0.61 -27.07 2.99 -615.25 -1.84 -28.90 16 25 C -0.21 -10.67 10.59 84.03 0.89 -9.78 16 26 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 27 C -0.07 -3.42 5.50 84.86 0.47 -2.95 16 28 N -0.95 -53.02 10.47 21.65 0.23 -52.80 16 29 Si 0.97 43.14 29.55 68.60 2.03 45.17 16 30 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 31 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 32 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.09 1.24 7.09 -2.38 -0.02 1.22 16 38 H 0.18 3.24 8.06 -2.91 -0.02 3.22 16 39 H 0.19 2.82 8.06 -2.91 -0.02 2.79 16 40 H 0.06 1.19 7.95 -2.39 -0.02 1.17 16 41 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.08 1.99 5.95 -2.38 -0.01 1.97 16 43 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.11 1.95 8.09 -2.39 -0.02 1.93 16 45 H 0.41 11.39 8.66 -92.71 -0.80 10.58 16 46 H 0.04 1.50 7.98 -2.39 -0.02 1.49 16 47 H 0.07 2.27 7.82 -2.39 -0.02 2.25 16 48 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.07 2.26 7.82 -2.39 -0.02 2.24 16 50 H 0.08 2.15 7.82 -2.38 -0.02 2.14 16 51 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 52 H 0.24 13.61 8.31 -92.71 -0.77 12.84 16 Total: -1.00 -64.27 408.62 2.78 -61.49 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: 0.11 Total: 35.94 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 7.90 Total: 5.01 kcal Atomic # 7 Polarization: -122.89 SS G_CDS: -7.21 Total: -130.11 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.04 Total: -17.50 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -64.27 2.78 -61.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110577667.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.396 kcal (2) G-P(sol) polarization free energy of solvation -64.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds