Wall clock time and date at job start Wed Apr 1 2020 04:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47212 * 2 1 4 4 C 1.50692 * 109.47327 * 120.00222 * 2 1 3 5 5 N 1.30456 * 125.99035 * 300.14945 * 4 2 1 6 6 N 1.39932 * 108.89725 * 180.25727 * 5 4 2 7 7 H 0.96996 * 125.75375 * 179.72699 * 6 5 4 8 8 C 1.34261 * 108.49322 * 359.74964 * 6 5 4 9 9 C 1.38044 * 107.41745 * 0.02562 * 8 6 5 10 10 C 1.47424 * 126.41292 * 179.97438 * 9 8 6 11 11 O 1.21609 * 119.99464 * 213.21681 * 10 9 8 12 12 N 1.34768 * 120.00740 * 33.21527 * 10 9 8 13 13 C 1.48125 * 127.83880 * 355.43812 * 12 10 9 14 14 C 1.54324 * 104.69217 * 140.29037 * 13 12 10 15 15 H 1.09001 * 112.59721 * 262.02865 * 14 13 12 16 16 C 1.54172 * 108.85951 * 137.45069 * 14 13 12 17 17 C 1.54844 * 104.32309 * 271.23472 * 16 14 13 18 18 C 1.55768 * 102.31335 * 321.13306 * 17 16 14 19 19 C 1.54155 * 103.88605 * 39.34670 * 18 17 16 20 20 C 1.53006 * 111.82179 * 212.54062 * 19 18 17 21 21 N 1.46503 * 109.46864 * 299.25582 * 20 19 18 22 22 C 1.36938 * 119.99800 * 179.97438 * 21 20 19 23 23 H 1.07998 * 119.99883 * 0.02562 * 22 21 20 24 24 C 1.38809 * 119.99922 * 179.97438 * 22 21 20 25 25 N 1.31622 * 119.99793 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99971 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47103 * 180.02562 * 26 24 22 28 28 H 1.48499 * 109.47172 * 300.00488 * 26 24 22 29 29 H 1.48499 * 109.46909 * 60.00610 * 26 24 22 30 30 C 1.48117 * 127.85036 * 175.48081 * 12 10 9 31 31 H 1.08996 * 109.47083 * 299.99658 * 1 2 3 32 32 H 1.09004 * 109.46961 * 59.99659 * 1 2 3 33 33 H 1.08995 * 109.47129 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.46965 * 240.00571 * 2 1 3 35 35 H 1.08996 * 109.46854 * 179.97438 * 3 2 1 36 36 H 1.08992 * 109.46915 * 300.00442 * 3 2 1 37 37 H 1.09006 * 109.46299 * 60.00033 * 3 2 1 38 38 H 1.07999 * 126.28734 * 180.02562 * 8 6 5 39 39 H 1.09002 * 110.39168 * 21.48392 * 13 12 10 40 40 H 1.09001 * 110.39249 * 259.09449 * 13 12 10 41 41 H 1.08998 * 110.46092 * 29.94815 * 16 14 13 42 42 H 1.09004 * 110.45767 * 152.40160 * 16 14 13 43 43 H 1.09003 * 110.75198 * 80.12615 * 17 16 14 44 44 H 1.08995 * 110.75712 * 203.31385 * 17 16 14 45 45 H 1.09004 * 111.74644 * 280.24823 * 18 17 16 46 46 H 1.09008 * 109.59682 * 157.39884 * 18 17 16 47 47 H 1.08998 * 109.47160 * 179.25716 * 20 19 18 48 48 H 1.08996 * 109.47522 * 59.25880 * 20 19 18 49 49 H 0.96996 * 119.99830 * 0.02562 * 21 20 19 50 50 H 0.97009 * 119.99568 * 179.97438 * 25 24 22 51 51 H 1.09002 * 110.39325 * 100.90700 * 30 12 10 52 52 H 1.08994 * 110.39115 * 338.51314 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7881 -0.3697 2.4657 6 7 2.4336 -1.2704 3.3203 7 1 2.4180 -1.2423 4.2897 8 6 3.0785 -2.1797 2.5721 9 6 2.8485 -1.8637 1.2482 10 6 3.3624 -2.5904 0.0730 11 8 3.6351 -1.9840 -0.9453 12 7 3.5301 -3.9265 0.1270 13 6 3.3445 -4.8191 1.2944 14 6 2.6737 -6.0836 0.7176 15 1 1.5921 -6.0825 0.8526 16 6 3.3288 -7.3277 1.3500 17 6 4.5218 -7.6487 0.4165 18 6 3.9280 -7.3572 -0.9937 19 6 3.0697 -6.0946 -0.7800 20 6 1.8437 -6.0787 -1.6952 21 7 2.2784 -6.0900 -3.0942 22 6 1.3492 -6.0795 -4.1000 23 1 0.2959 -6.0625 -3.8619 24 6 1.7611 -6.0896 -5.4255 25 7 3.0448 -6.1098 -5.7156 26 14 0.4935 -6.0760 -6.7976 27 1 1.1858 -6.0907 -8.1113 28 1 -0.3738 -7.2759 -6.6822 29 1 -0.3392 -4.8511 -6.6901 30 6 3.9425 -4.8357 -0.9671 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 3.1300 1.4425 0.0005 36 1 1.6766 1.9563 -0.8899 37 1 1.6766 1.9563 0.8901 38 1 3.6688 -3.0065 2.9388 39 1 2.6959 -4.3483 2.0332 40 1 4.3082 -5.0692 1.7383 41 1 3.6820 -7.1025 2.3562 42 1 2.6247 -8.1596 1.3714 43 1 5.3694 -6.9994 0.6360 44 1 4.8078 -8.6970 0.5017 45 1 3.3106 -8.1818 -1.3503 46 1 4.7365 -7.1540 -1.6960 47 1 1.2589 -5.1790 -1.5037 48 1 1.2315 -6.9587 -1.4979 49 1 3.2244 -6.1056 -3.3080 50 1 3.3326 -6.1172 -6.6420 51 1 4.9987 -5.0884 -0.8732 52 1 3.7455 -4.3775 -1.9363 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112444458.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:53 Heat of formation + Delta-G solvation = 41.720130 kcal Electronic energy + Delta-G solvation = -32014.706018 eV Core-core repulsion = 28015.387020 eV Total energy + Delta-G solvation = -3999.318997 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.64184 -40.33657 -38.12423 -35.67963 -34.65465 -34.24129 -31.71602 -30.94229 -30.60318 -29.74608 -28.73659 -27.09515 -25.76311 -25.52426 -23.97730 -23.42766 -22.38635 -21.81962 -20.22423 -19.78091 -19.08999 -18.51730 -17.76075 -17.09522 -16.34444 -15.95112 -15.27695 -15.13683 -14.87823 -14.73114 -14.62448 -14.42962 -14.04854 -13.65966 -13.52723 -13.17370 -13.11455 -13.03540 -12.84126 -12.66734 -12.40742 -12.15090 -11.89561 -11.59174 -11.52658 -11.20464 -11.14813 -11.07274 -10.87381 -10.78147 -10.75900 -10.67045 -10.59627 -10.47175 -10.31144 -10.23881 -9.90861 -9.65716 -9.61919 -9.55449 -8.91496 -8.79500 -8.44439 -6.83814 -5.68715 -2.96686 1.41045 2.13738 2.49137 3.12013 3.43161 3.49939 3.54338 3.55234 4.28130 4.41354 4.47417 4.59613 4.67039 4.79816 4.88607 5.00858 5.15776 5.21077 5.23163 5.30284 5.31384 5.32353 5.43066 5.53468 5.57911 5.58799 5.66372 5.68143 5.68734 5.77528 5.86707 5.90691 5.92355 6.01849 6.04606 6.08580 6.20254 6.22790 6.25442 6.28210 6.31733 6.37539 6.44250 6.55675 6.57474 6.66134 6.82402 6.89919 6.91296 7.39571 7.76810 7.80744 8.44982 8.50135 9.61512 10.18800 10.53878 11.54104 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008927 B = 0.003886 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3135.832912 B = 7204.298991 C = 9538.011691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.027 4.027 3 C -0.137 4.137 4 C 0.143 3.857 5 N -0.294 5.294 6 N -0.466 5.466 7 H 0.442 0.558 8 C 0.093 3.907 9 C -0.270 4.270 10 C 0.609 3.391 11 O -0.530 6.530 12 N -0.615 5.615 13 C 0.102 3.898 14 C -0.099 4.099 15 H 0.087 0.913 16 C -0.115 4.115 17 C -0.126 4.126 18 C -0.105 4.105 19 C -0.074 4.074 20 C 0.173 3.827 21 N -0.728 5.728 22 C -0.238 4.238 23 H 0.068 0.932 24 C -0.011 4.011 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.291 1.291 28 H -0.287 1.287 29 H -0.286 1.286 30 C 0.118 3.882 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.107 0.893 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.185 0.815 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.017 0.983 48 H 0.020 0.980 49 H 0.384 0.616 50 H 0.255 0.745 51 H 0.066 0.934 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.859 4.786 23.159 23.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.048 4.048 3 C -0.195 4.195 4 C -0.025 4.025 5 N -0.116 5.116 6 N -0.171 5.171 7 H 0.286 0.714 8 C -0.059 4.059 9 C -0.285 4.285 10 C 0.398 3.602 11 O -0.406 6.406 12 N -0.349 5.349 13 C -0.022 4.022 14 C -0.118 4.118 15 H 0.106 0.894 16 C -0.152 4.152 17 C -0.164 4.164 18 C -0.142 4.142 19 C -0.075 4.075 20 C 0.045 3.955 21 N -0.372 5.372 22 C -0.369 4.369 23 H 0.086 0.914 24 C -0.207 4.207 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.217 1.217 28 H -0.214 1.214 29 H -0.213 1.213 30 C -0.004 4.004 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.125 0.875 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.202 0.798 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.096 0.904 46 H 0.088 0.912 47 H 0.035 0.965 48 H 0.038 0.962 49 H 0.218 0.782 50 H 0.065 0.935 51 H 0.084 0.916 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.258 6.089 23.256 24.072 hybrid contribution 0.089 -0.785 -0.664 1.032 sum 1.346 5.304 22.592 23.245 Atomic orbital electron populations 1.21809 0.93751 1.02220 1.02148 1.19853 0.95963 0.95970 0.92965 1.21751 1.01336 0.94433 1.01973 1.22373 0.94072 0.92622 0.93476 1.77102 1.20033 1.14058 1.00370 1.46083 1.39484 1.22069 1.09420 0.71396 1.23207 0.96808 0.94686 0.91197 1.20283 1.12688 1.02796 0.92732 1.16814 0.77196 0.79721 0.86475 1.90809 1.50942 1.66435 1.32445 1.48771 1.67950 1.05220 1.12939 1.22660 0.99873 0.90335 0.89317 1.22710 1.00193 0.93895 0.95040 0.89437 1.22358 0.97625 0.97172 0.98084 1.22680 0.97214 1.00852 0.95617 1.22470 0.98766 0.97012 0.95999 1.22255 0.96676 0.94668 0.93895 1.20556 0.92241 0.97622 0.85041 1.42305 1.06587 1.89349 0.98994 1.19144 0.89030 1.42661 0.86093 0.91438 1.24693 0.95909 1.03050 0.97091 1.69645 1.12844 1.57749 1.17860 0.86299 0.80507 0.77779 0.81797 1.21723 1.21400 1.21303 1.22514 0.97038 0.88595 0.92250 0.92357 0.91745 0.92546 0.87450 0.92489 0.91845 0.92489 0.79820 0.90737 0.91042 0.91895 0.91329 0.91742 0.91758 0.90444 0.91246 0.96483 0.96214 0.78167 0.93533 0.91576 0.88337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.18 37.16 0.34 -1.37 16 2 C -0.03 -0.37 3.24 -91.77 -0.30 -0.67 16 3 C -0.14 -1.62 9.18 37.16 0.34 -1.28 16 4 C 0.14 1.97 5.76 -82.02 -0.47 1.50 16 5 N -0.29 -3.60 12.63 33.90 0.43 -3.18 16 6 N -0.47 -3.99 7.29 30.85 0.22 -3.77 16 7 H 0.44 2.02 8.96 -182.73 -1.64 0.38 16 8 C 0.09 0.85 10.03 -16.56 -0.17 0.68 16 9 C -0.27 -3.67 5.76 -105.07 -0.61 -4.28 16 10 C 0.61 10.17 7.69 -12.52 -0.10 10.07 16 11 O -0.53 -11.03 15.68 5.27 0.08 -10.95 16 12 N -0.62 -9.07 3.31 -170.69 -0.57 -9.63 16 13 C 0.10 1.05 5.27 -2.45 -0.01 1.04 16 14 C -0.10 -1.15 3.58 -88.30 -0.32 -1.46 16 15 H 0.09 1.05 7.88 -51.93 -0.41 0.64 16 16 C -0.11 -1.08 6.08 -25.15 -0.15 -1.23 16 17 C -0.13 -1.33 6.86 -24.28 -0.17 -1.50 16 18 C -0.10 -1.51 5.19 -24.65 -0.13 -1.64 16 19 C -0.07 -1.14 0.62 -152.19 -0.09 -1.23 16 20 C 0.17 3.50 5.14 -4.04 -0.02 3.48 16 21 N -0.73 -18.38 4.93 -59.91 -0.30 -18.68 16 22 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 23 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 24 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 26 Si 0.90 22.90 29.55 -169.99 -5.02 17.88 16 27 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 29 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 30 C 0.12 1.96 5.79 -2.46 -0.01 1.95 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.11 1.76 6.31 -51.93 -0.33 1.43 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.18 1.01 6.57 -52.49 -0.34 0.66 16 39 H 0.07 0.64 5.56 -51.93 -0.29 0.35 16 40 H 0.07 0.60 7.61 -51.93 -0.40 0.20 16 41 H 0.06 0.46 7.74 -51.93 -0.40 0.05 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 1.23 7.96 -51.93 -0.41 0.82 16 46 H 0.07 1.08 7.79 -51.92 -0.40 0.67 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.38 10.13 6.91 -40.82 -0.28 9.84 16 50 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 51 H 0.07 1.00 7.67 -51.93 -0.40 0.61 16 52 H 0.10 2.10 7.03 -51.93 -0.37 1.73 16 LS Contribution 406.34 15.07 6.12 6.12 Total: -1.00 -35.25 406.34 -10.27 -45.52 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -9.86 Total: 7.72 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -2.11 Total: -3.28 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: 0.52 Total: -63.01 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.08 Total: -10.95 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.25 -10.27 -45.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112444458.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.244 kcal (2) G-P(sol) polarization free energy of solvation -35.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds