Wall clock time and date at job start Wed Apr 1 2020 04:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47212 * 2 1 4 4 C 1.50692 * 109.47327 * 120.00222 * 2 1 3 5 5 N 1.30456 * 125.99035 * 300.14945 * 4 2 1 6 6 N 1.39932 * 108.89725 * 180.25727 * 5 4 2 7 7 H 0.96996 * 125.75375 * 179.72699 * 6 5 4 8 8 C 1.34261 * 108.49322 * 359.74964 * 6 5 4 9 9 C 1.38044 * 107.41745 * 0.02562 * 8 6 5 10 10 C 1.47424 * 126.41292 * 179.97438 * 9 8 6 11 11 O 1.21609 * 119.99464 * 213.21681 * 10 9 8 12 12 N 1.34768 * 120.00740 * 33.21527 * 10 9 8 13 13 C 1.48125 * 127.83880 * 355.43812 * 12 10 9 14 14 C 1.54324 * 104.69217 * 140.29037 * 13 12 10 15 15 H 1.09001 * 112.59721 * 262.02865 * 14 13 12 16 16 C 1.54172 * 108.85951 * 137.45069 * 14 13 12 17 17 C 1.54844 * 104.32309 * 271.23472 * 16 14 13 18 18 C 1.55768 * 102.31335 * 321.13306 * 17 16 14 19 19 C 1.54155 * 103.88605 * 39.34670 * 18 17 16 20 20 C 1.53006 * 111.82179 * 212.54062 * 19 18 17 21 21 N 1.46503 * 109.46864 * 299.25582 * 20 19 18 22 22 C 1.36938 * 119.99800 * 179.97438 * 21 20 19 23 23 H 1.07998 * 119.99883 * 0.02562 * 22 21 20 24 24 C 1.38809 * 119.99922 * 179.97438 * 22 21 20 25 25 N 1.31622 * 119.99793 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99971 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47103 * 180.02562 * 26 24 22 28 28 H 1.48499 * 109.47172 * 300.00488 * 26 24 22 29 29 H 1.48499 * 109.46909 * 60.00610 * 26 24 22 30 30 C 1.48117 * 127.85036 * 175.48081 * 12 10 9 31 31 H 1.08996 * 109.47083 * 299.99658 * 1 2 3 32 32 H 1.09004 * 109.46961 * 59.99659 * 1 2 3 33 33 H 1.08995 * 109.47129 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.46965 * 240.00571 * 2 1 3 35 35 H 1.08996 * 109.46854 * 179.97438 * 3 2 1 36 36 H 1.08992 * 109.46915 * 300.00442 * 3 2 1 37 37 H 1.09006 * 109.46299 * 60.00033 * 3 2 1 38 38 H 1.07999 * 126.28734 * 180.02562 * 8 6 5 39 39 H 1.09002 * 110.39168 * 21.48392 * 13 12 10 40 40 H 1.09001 * 110.39249 * 259.09449 * 13 12 10 41 41 H 1.08998 * 110.46092 * 29.94815 * 16 14 13 42 42 H 1.09004 * 110.45767 * 152.40160 * 16 14 13 43 43 H 1.09003 * 110.75198 * 80.12615 * 17 16 14 44 44 H 1.08995 * 110.75712 * 203.31385 * 17 16 14 45 45 H 1.09004 * 111.74644 * 280.24823 * 18 17 16 46 46 H 1.09008 * 109.59682 * 157.39884 * 18 17 16 47 47 H 1.08998 * 109.47160 * 179.25716 * 20 19 18 48 48 H 1.08996 * 109.47522 * 59.25880 * 20 19 18 49 49 H 0.96996 * 119.99830 * 0.02562 * 21 20 19 50 50 H 0.97009 * 119.99568 * 179.97438 * 25 24 22 51 51 H 1.09002 * 110.39325 * 100.90700 * 30 12 10 52 52 H 1.08994 * 110.39115 * 338.51314 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7881 -0.3697 2.4657 6 7 2.4336 -1.2704 3.3203 7 1 2.4180 -1.2423 4.2897 8 6 3.0785 -2.1797 2.5721 9 6 2.8485 -1.8637 1.2482 10 6 3.3624 -2.5904 0.0730 11 8 3.6351 -1.9840 -0.9453 12 7 3.5301 -3.9265 0.1270 13 6 3.3445 -4.8191 1.2944 14 6 2.6737 -6.0836 0.7176 15 1 1.5921 -6.0825 0.8526 16 6 3.3288 -7.3277 1.3500 17 6 4.5218 -7.6487 0.4165 18 6 3.9280 -7.3572 -0.9937 19 6 3.0697 -6.0946 -0.7800 20 6 1.8437 -6.0787 -1.6952 21 7 2.2784 -6.0900 -3.0942 22 6 1.3492 -6.0795 -4.1000 23 1 0.2959 -6.0625 -3.8619 24 6 1.7611 -6.0896 -5.4255 25 7 3.0448 -6.1098 -5.7156 26 14 0.4935 -6.0760 -6.7976 27 1 1.1858 -6.0907 -8.1113 28 1 -0.3738 -7.2759 -6.6822 29 1 -0.3392 -4.8511 -6.6901 30 6 3.9425 -4.8357 -0.9671 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 3.1300 1.4425 0.0005 36 1 1.6766 1.9563 -0.8899 37 1 1.6766 1.9563 0.8901 38 1 3.6688 -3.0065 2.9388 39 1 2.6959 -4.3483 2.0332 40 1 4.3082 -5.0692 1.7383 41 1 3.6820 -7.1025 2.3562 42 1 2.6247 -8.1596 1.3714 43 1 5.3694 -6.9994 0.6360 44 1 4.8078 -8.6970 0.5017 45 1 3.3106 -8.1818 -1.3503 46 1 4.7365 -7.1540 -1.6960 47 1 1.2589 -5.1790 -1.5037 48 1 1.2315 -6.9587 -1.4979 49 1 3.2244 -6.1056 -3.3080 50 1 3.3326 -6.1172 -6.6420 51 1 4.9987 -5.0884 -0.8732 52 1 3.7455 -4.3775 -1.9363 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112444458.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:51 Heat of formation + Delta-G solvation = 17.267810 kcal Electronic energy + Delta-G solvation = -32015.766350 eV Core-core repulsion = 28015.387020 eV Total energy + Delta-G solvation = -4000.379329 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.56060 -41.45275 -39.37898 -36.70129 -36.41063 -35.48831 -33.50330 -31.95971 -31.65669 -30.94583 -30.06899 -28.07974 -27.33059 -26.52454 -25.59288 -24.38528 -23.89554 -22.92826 -21.20566 -20.76583 -20.07608 -19.82112 -19.23393 -18.50307 -17.61339 -17.04532 -16.71393 -16.35143 -16.11684 -15.82867 -15.72845 -15.57714 -15.33407 -15.07390 -14.95881 -14.75245 -14.49008 -14.14508 -13.99237 -13.69884 -13.55709 -13.22192 -13.08835 -13.07659 -12.93399 -12.71371 -12.46916 -12.23058 -12.22069 -12.11586 -12.06426 -11.82267 -11.70672 -11.65516 -11.60577 -11.49213 -11.43686 -11.29801 -10.94511 -10.83207 -10.51956 -9.90684 -9.58539 -8.99395 -7.95464 -5.23585 0.58855 1.09192 1.43398 1.47566 1.53327 1.72343 2.02794 2.31785 2.54604 3.31777 3.37304 3.43811 3.56484 3.65248 3.73445 3.98653 4.08833 4.18946 4.19738 4.24269 4.25141 4.29637 4.33760 4.42877 4.49303 4.51856 4.55685 4.58648 4.73405 4.74300 4.79669 4.81645 4.88793 4.90581 4.94336 5.01134 5.05606 5.09959 5.16610 5.24456 5.25560 5.28640 5.34495 5.35139 5.42212 5.43183 5.45094 5.56574 5.59214 6.26509 6.28694 6.51423 6.68409 7.23768 7.33046 8.09352 8.33454 9.27827 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008927 B = 0.003886 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3135.832912 B = 7204.298991 C = 9538.011691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.033 4.033 3 C -0.129 4.129 4 C 0.126 3.874 5 N -0.307 5.307 6 N -0.442 5.442 7 H 0.463 0.537 8 C 0.133 3.867 9 C -0.311 4.311 10 C 0.602 3.398 11 O -0.592 6.592 12 N -0.615 5.615 13 C 0.100 3.900 14 C -0.093 4.093 15 H 0.085 0.915 16 C -0.103 4.103 17 C -0.115 4.115 18 C -0.106 4.106 19 C -0.070 4.070 20 C 0.174 3.826 21 N -0.738 5.738 22 C -0.249 4.249 23 H 0.069 0.931 24 C -0.072 4.072 25 N -0.967 5.967 26 Si 0.971 3.029 27 H -0.292 1.292 28 H -0.274 1.274 29 H -0.283 1.283 30 C 0.122 3.878 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.068 0.932 35 H 0.044 0.956 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.234 0.766 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.056 0.944 46 H 0.046 0.954 47 H -0.005 1.005 48 H 0.023 0.977 49 H 0.375 0.625 50 H 0.251 0.749 51 H 0.081 0.919 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.743 3.844 27.793 28.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.053 4.053 3 C -0.187 4.187 4 C -0.042 4.042 5 N -0.130 5.130 6 N -0.149 5.149 7 H 0.312 0.688 8 C -0.021 4.021 9 C -0.326 4.326 10 C 0.393 3.607 11 O -0.474 6.474 12 N -0.347 5.347 13 C -0.021 4.021 14 C -0.113 4.113 15 H 0.103 0.897 16 C -0.141 4.141 17 C -0.152 4.152 18 C -0.144 4.144 19 C -0.071 4.071 20 C 0.048 3.952 21 N -0.380 5.380 22 C -0.381 4.381 23 H 0.087 0.913 24 C -0.264 4.264 25 N -0.617 5.617 26 Si 0.800 3.200 27 H -0.218 1.218 28 H -0.200 1.200 29 H -0.209 1.209 30 C -0.001 4.001 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.250 0.750 39 H 0.121 0.879 40 H 0.129 0.871 41 H 0.123 0.877 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.013 0.987 48 H 0.041 0.959 49 H 0.207 0.793 50 H 0.060 0.940 51 H 0.099 0.901 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.099 5.125 27.990 28.477 hybrid contribution 0.109 -0.499 -2.061 2.123 sum 1.207 4.626 25.929 26.366 Atomic orbital electron populations 1.21745 0.92751 1.01564 1.03084 1.19770 0.96827 0.96599 0.92130 1.21685 1.00475 0.93573 1.02950 1.22333 0.94866 0.93109 0.93883 1.77037 1.20855 1.15156 0.99909 1.46110 1.37749 1.20718 1.10319 0.68770 1.23702 0.94677 0.94548 0.89128 1.20139 1.15186 1.03803 0.93487 1.17376 0.76414 0.80184 0.86749 1.90766 1.53648 1.67899 1.35045 1.48842 1.67078 1.04955 1.13835 1.23053 1.02402 0.88604 0.88026 1.22725 1.00643 0.96282 0.91654 0.89654 1.22352 0.96667 0.95639 0.99394 1.22654 0.98032 1.02163 0.92387 1.22426 0.97751 0.95546 0.98724 1.22144 0.94493 0.94597 0.95905 1.20660 0.94607 0.96267 0.83697 1.42478 1.05736 1.89090 1.00732 1.19552 0.89683 1.41567 0.87253 0.91278 1.25525 0.97864 1.03554 0.99470 1.69811 1.14716 1.59280 1.17905 0.85251 0.78182 0.78109 0.78476 1.21834 1.19968 1.20949 1.22287 0.98177 0.89102 0.90507 0.91090 0.91026 0.93932 0.91348 0.93711 0.90969 0.91281 0.75040 0.87931 0.87123 0.87729 0.91048 0.90220 0.90340 0.92498 0.93475 0.98690 0.95906 0.79256 0.94006 0.90059 0.94412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 9.18 71.98 0.66 -2.69 16 2 C -0.03 -0.95 3.24 -11.54 -0.04 -0.98 16 3 C -0.13 -3.17 9.18 71.98 0.66 -2.51 16 4 C 0.13 3.45 5.76 43.51 0.25 3.70 16 5 N -0.31 -6.91 12.63 -46.68 -0.59 -7.50 16 6 N -0.44 -5.75 7.29 -56.32 -0.41 -6.16 16 7 H 0.46 1.86 8.96 -213.43 -1.91 -0.05 16 8 C 0.13 1.86 10.03 84.28 0.85 2.71 16 9 C -0.31 -8.16 5.76 -20.15 -0.12 -8.28 16 10 C 0.60 20.77 7.69 86.66 0.67 21.43 16 11 O -0.59 -26.99 15.68 -4.06 -0.06 -27.05 16 12 N -0.62 -17.89 3.31 -812.20 -2.69 -20.59 16 13 C 0.10 1.65 5.27 86.52 0.46 2.11 16 14 C -0.09 -1.89 3.58 -9.29 -0.03 -1.93 16 15 H 0.09 1.81 7.88 -2.39 -0.02 1.79 16 16 C -0.10 -1.41 6.08 31.62 0.19 -1.22 16 17 C -0.12 -2.01 6.86 32.18 0.22 -1.79 16 18 C -0.11 -3.07 5.19 31.94 0.17 -2.90 16 19 C -0.07 -2.19 0.62 -50.68 -0.03 -2.22 16 20 C 0.17 7.42 5.14 86.38 0.44 7.87 16 21 N -0.74 -39.69 4.93 -343.44 -1.69 -41.38 16 22 C -0.25 -14.77 9.99 84.03 0.84 -13.93 16 23 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 24 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 25 N -0.97 -61.76 13.06 21.65 0.28 -61.47 16 26 Si 0.97 48.50 29.55 68.60 2.03 50.53 16 27 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 28 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 29 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 30 C 0.12 4.25 5.79 86.52 0.50 4.76 16 31 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 2.51 6.31 -2.38 -0.02 2.50 16 35 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.23 0.87 6.57 -2.91 -0.02 0.85 16 39 H 0.10 1.15 5.56 -2.39 -0.01 1.14 16 40 H 0.11 1.07 7.61 -2.39 -0.02 1.05 16 41 H 0.10 0.70 7.74 -2.39 -0.02 0.68 16 42 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 43 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.06 1.85 7.96 -2.38 -0.02 1.83 16 46 H 0.05 1.53 7.79 -2.38 -0.02 1.51 16 47 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 48 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.38 21.31 6.91 -92.71 -0.64 20.67 16 50 H 0.25 15.55 8.31 -92.70 -0.77 14.78 16 51 H 0.08 2.52 7.67 -2.39 -0.02 2.51 16 52 H 0.04 1.77 7.03 -2.39 -0.02 1.75 16 Total: -1.00 -86.48 406.34 1.40 -85.08 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: -1.62 Total: 28.27 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 6.15 Total: 0.26 kcal Atomic # 7 Polarization: -132.00 SS G_CDS: -5.10 Total: -137.10 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.06 Total: -27.05 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 2.03 Total: 50.53 kcal Total: -86.48 1.40 -85.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112444458.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.352 kcal (2) G-P(sol) polarization free energy of solvation -86.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds