Wall clock time and date at job start Wed Apr 1 2020 04:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47336 * 2 1 4 4 C 1.50698 * 109.47316 * 180.02562 * 3 2 1 5 5 N 1.30449 * 125.98955 * 270.14555 * 4 3 2 6 6 N 1.39941 * 108.89710 * 180.26145 * 5 4 3 7 7 H 0.96999 * 125.75339 * 179.73956 * 6 5 4 8 8 C 1.34259 * 108.48755 * 359.75412 * 6 5 4 9 9 C 1.38041 * 107.41913 * 0.02562 * 8 6 5 10 10 C 1.47427 * 126.41215 * 179.97438 * 9 8 6 11 11 O 1.21606 * 119.99966 * 212.96925 * 10 9 8 12 12 N 1.34781 * 120.00098 * 32.96993 * 10 9 8 13 13 C 1.48117 * 127.84227 * 355.44742 * 12 10 9 14 14 C 1.54333 * 104.69251 * 140.29014 * 13 12 10 15 15 H 1.09002 * 112.59485 * 262.03327 * 14 13 12 16 16 C 1.54161 * 108.85988 * 137.44828 * 14 13 12 17 17 C 1.54845 * 104.32786 * 271.23975 * 16 14 13 18 18 C 1.55774 * 102.30888 * 321.12908 * 17 16 14 19 19 C 1.54158 * 103.88434 * 39.34896 * 18 17 16 20 20 C 1.53005 * 111.82293 * 212.53786 * 19 18 17 21 21 N 1.46496 * 109.46726 * 299.25550 * 20 19 18 22 22 C 1.36936 * 119.99797 * 179.97438 * 21 20 19 23 23 H 1.08002 * 119.99960 * 0.02562 * 22 21 20 24 24 C 1.38814 * 120.00022 * 180.02562 * 22 21 20 25 25 N 1.31625 * 119.99889 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 120.00258 * 0.02562 * 24 22 21 27 27 H 1.48497 * 109.47121 * 270.00290 * 26 24 22 28 28 H 1.48507 * 109.46821 * 29.99997 * 26 24 22 29 29 H 1.48500 * 109.47506 * 149.99920 * 26 24 22 30 30 C 1.48123 * 127.84362 * 175.49047 * 12 10 9 31 31 H 1.09007 * 109.47138 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46755 * 299.99509 * 1 2 3 33 33 H 1.08997 * 109.47071 * 59.99819 * 1 2 3 34 34 H 1.09009 * 109.46830 * 240.00062 * 2 1 3 35 35 H 1.09000 * 109.47309 * 120.00909 * 2 1 3 36 36 H 1.09009 * 109.47110 * 60.00234 * 3 2 1 37 37 H 1.09000 * 109.47664 * 300.00692 * 3 2 1 38 38 H 1.08001 * 126.28447 * 180.02562 * 8 6 5 39 39 H 1.08997 * 110.39125 * 21.48452 * 13 12 10 40 40 H 1.09000 * 110.38980 * 259.09460 * 13 12 10 41 41 H 1.09006 * 110.46272 * 29.95056 * 16 14 13 42 42 H 1.09002 * 110.46559 * 152.39824 * 16 14 13 43 43 H 1.09006 * 110.75715 * 80.12080 * 17 16 14 44 44 H 1.08995 * 110.75899 * 203.31488 * 17 16 14 45 45 H 1.08994 * 111.74818 * 280.25067 * 18 17 16 46 46 H 1.09005 * 109.59545 * 157.39374 * 18 17 16 47 47 H 1.08995 * 109.47005 * 179.25611 * 20 19 18 48 48 H 1.08992 * 109.46980 * 59.25328 * 20 19 18 49 49 H 0.97000 * 120.00564 * 0.02562 * 21 20 19 50 50 H 0.97003 * 119.99964 * 180.02562 * 25 24 22 51 51 H 1.08994 * 110.39317 * 100.90780 * 30 12 10 52 52 H 1.08995 * 110.39074 * 338.51239 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3140 1.4396 1.0545 6 7 5.6514 1.4467 0.6427 7 1 6.4248 1.4500 1.2282 8 6 5.6836 1.4486 -0.6995 9 6 4.3768 1.4433 -1.1442 10 6 3.9305 1.4436 -2.5493 11 8 2.9017 2.0124 -2.8603 12 7 4.6627 0.8134 -3.4891 13 6 5.9775 0.1516 -3.3241 14 6 5.8838 -1.1254 -4.1858 15 1 5.6366 -2.0097 -3.5985 16 6 7.2053 -1.3023 -4.9597 17 6 6.9887 -0.5123 -6.2737 18 6 5.5031 -0.8343 -6.6137 19 6 4.7966 -0.8110 -5.2438 20 6 3.6371 -1.8077 -5.1847 21 7 2.6434 -1.4616 -6.2040 22 6 1.5105 -2.2185 -6.3404 23 1 1.3493 -3.0704 -5.6964 24 6 0.5691 -1.8909 -7.3066 25 7 -0.5201 -2.6182 -7.4374 26 14 0.8481 -0.4180 -8.4210 27 1 0.2625 0.7945 -7.7948 28 1 2.3060 -0.2172 -8.6203 29 1 0.1978 -0.6603 -9.7339 30 6 4.3357 0.6262 -4.9216 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5139 -0.8901 35 1 1.8934 -0.5140 0.8899 36 1 1.6767 1.9563 0.8901 37 1 1.6767 1.9564 -0.8899 38 1 6.5692 1.4533 -1.3176 39 1 6.1438 -0.1072 -2.2784 40 1 6.7762 0.7977 -3.6881 41 1 8.0371 -0.8814 -4.3947 42 1 7.3846 -2.3564 -5.1717 43 1 7.1401 0.5551 -6.1121 44 1 7.6490 -0.8801 -7.0589 45 1 5.3987 -1.8141 -7.0796 46 1 5.1001 -0.0574 -7.2635 47 1 3.1747 -1.7690 -4.1985 48 1 4.0130 -2.8137 -5.3706 49 1 2.7883 -0.6967 -6.7827 50 1 -1.1778 -2.3895 -8.1128 51 1 4.8804 1.3457 -5.5327 52 1 3.2622 0.7257 -5.0822 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112445143.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:57 Heat of formation + Delta-G solvation = 43.279959 kcal Electronic energy + Delta-G solvation = -32149.949312 eV Core-core repulsion = 28150.697954 eV Total energy + Delta-G solvation = -3999.251358 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.66838 -40.45878 -38.22300 -35.32959 -34.81595 -34.37886 -31.80774 -31.70967 -30.79754 -29.96077 -29.07324 -27.16285 -25.96794 -25.64855 -24.00000 -22.50902 -21.93820 -21.75428 -20.43218 -20.06622 -19.43602 -18.72334 -17.95075 -17.45877 -16.48774 -16.04939 -15.43050 -15.17593 -15.04959 -14.95264 -14.44615 -14.38295 -14.25782 -13.84513 -13.73247 -13.35190 -13.23262 -13.01122 -12.79773 -12.72490 -12.48996 -12.05676 -11.99629 -11.79389 -11.53070 -11.52210 -11.22088 -11.11765 -10.97836 -10.86824 -10.84749 -10.73126 -10.56965 -10.53341 -10.47388 -10.24317 -10.02331 -9.72071 -9.64863 -9.51689 -8.96955 -8.83598 -8.56146 -7.16583 -5.70646 -3.05611 1.35441 2.07069 2.44366 3.02011 3.35236 3.41587 3.46212 3.51014 4.24545 4.32572 4.40331 4.49208 4.65373 4.66620 4.91726 4.95722 5.06087 5.14993 5.17164 5.19093 5.23353 5.26138 5.30980 5.43266 5.45145 5.49445 5.52673 5.61087 5.64979 5.76174 5.77393 5.83756 5.85124 5.91349 5.97304 5.98234 6.07268 6.09837 6.13622 6.23923 6.32214 6.35368 6.37788 6.41282 6.43490 6.47640 6.69026 6.77603 6.85340 7.34386 7.69847 8.05086 8.35762 8.48177 9.27312 9.99751 10.19389 11.47965 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009032 B = 0.004262 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3099.198981 B = 6568.865755 C = 8733.479421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.051 4.051 4 C 0.139 3.861 5 N -0.297 5.297 6 N -0.465 5.465 7 H 0.442 0.558 8 C 0.094 3.906 9 C -0.271 4.271 10 C 0.611 3.389 11 O -0.530 6.530 12 N -0.616 5.616 13 C 0.101 3.899 14 C -0.097 4.097 15 H 0.090 0.910 16 C -0.115 4.115 17 C -0.125 4.125 18 C -0.109 4.109 19 C -0.079 4.079 20 C 0.178 3.822 21 N -0.752 5.752 22 C -0.241 4.241 23 H 0.089 0.911 24 C 0.006 3.994 25 N -0.935 5.935 26 Si 0.880 3.120 27 H -0.283 1.283 28 H -0.277 1.277 29 H -0.291 1.291 30 C 0.116 3.884 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.185 0.815 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.079 0.921 46 H 0.064 0.936 47 H 0.026 0.974 48 H 0.029 0.971 49 H 0.360 0.640 50 H 0.259 0.741 51 H 0.066 0.934 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.008 7.455 14.078 25.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.090 4.090 4 C -0.029 4.029 5 N -0.119 5.119 6 N -0.170 5.170 7 H 0.287 0.713 8 C -0.058 4.058 9 C -0.286 4.286 10 C 0.400 3.600 11 O -0.407 6.407 12 N -0.349 5.349 13 C -0.022 4.022 14 C -0.117 4.117 15 H 0.108 0.892 16 C -0.153 4.153 17 C -0.163 4.163 18 C -0.146 4.146 19 C -0.080 4.080 20 C 0.051 3.949 21 N -0.398 5.398 22 C -0.371 4.371 23 H 0.107 0.893 24 C -0.189 4.189 25 N -0.583 5.583 26 Si 0.710 3.290 27 H -0.209 1.209 28 H -0.203 1.203 29 H -0.218 1.218 30 C -0.006 4.006 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.121 0.879 38 H 0.202 0.798 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.083 0.917 47 H 0.044 0.956 48 H 0.047 0.953 49 H 0.193 0.807 50 H 0.069 0.931 51 H 0.085 0.915 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 19.226 7.659 15.313 25.745 hybrid contribution 0.755 0.960 -1.469 1.910 sum 19.981 8.619 13.845 25.791 Atomic orbital electron populations 1.21741 0.95001 1.02080 1.01976 1.21405 0.96402 0.95087 1.02244 1.20307 0.85232 0.98890 1.04607 1.22449 0.97095 0.94845 0.88490 1.77159 0.86150 1.26264 1.22360 1.46074 1.07828 1.57747 1.05346 0.71345 1.23217 0.98901 0.98125 0.85557 1.20235 0.92229 1.21700 0.94456 1.16815 0.82640 0.77791 0.82718 1.90799 1.24394 1.44135 1.81340 1.48749 1.20781 1.55497 1.09903 1.22676 0.85568 0.93585 1.00384 1.22697 0.95156 0.97454 0.96354 0.89159 1.22360 0.95888 1.00821 0.96182 1.22671 0.96925 0.99686 0.97013 1.22518 0.93675 1.02743 0.95704 1.22328 0.95633 0.95242 0.94835 1.20527 0.87395 0.94277 0.92699 1.42668 1.22070 1.34827 1.40212 1.19025 0.94725 1.08271 1.15041 0.89334 1.24632 0.96560 0.98551 0.99201 1.69703 1.10734 1.40764 1.37095 0.86611 0.77413 0.83994 0.80955 1.20906 1.20314 1.21785 1.22503 1.03118 0.95089 0.79924 0.92389 0.92921 0.92029 0.91532 0.92198 0.90317 0.87877 0.79803 0.90549 0.90989 0.91752 0.91166 0.91701 0.91638 0.90191 0.91683 0.95567 0.95321 0.80657 0.93134 0.91535 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 37.16 0.37 -1.48 16 2 C -0.11 -1.47 5.92 -26.74 -0.16 -1.63 16 3 C -0.05 -0.68 5.57 -27.89 -0.16 -0.83 16 4 C 0.14 1.87 6.51 -82.02 -0.53 1.34 16 5 N -0.30 -3.61 12.63 33.89 0.43 -3.19 16 6 N -0.47 -3.85 7.29 30.85 0.22 -3.62 16 7 H 0.44 1.90 8.96 -182.72 -1.64 0.26 16 8 C 0.09 0.81 10.03 -16.56 -0.17 0.65 16 9 C -0.27 -3.52 5.77 -105.07 -0.61 -4.13 16 10 C 0.61 9.68 7.74 -12.52 -0.10 9.58 16 11 O -0.53 -10.52 15.73 5.27 0.08 -10.44 16 12 N -0.62 -8.48 3.31 -170.69 -0.57 -9.05 16 13 C 0.10 0.96 5.27 -2.45 -0.01 0.95 16 14 C -0.10 -1.04 3.58 -88.30 -0.32 -1.35 16 15 H 0.09 1.00 7.88 -51.93 -0.41 0.59 16 16 C -0.11 -0.98 6.08 -25.15 -0.15 -1.13 16 17 C -0.13 -1.20 6.86 -24.28 -0.17 -1.36 16 18 C -0.11 -1.43 5.19 -24.65 -0.13 -1.56 16 19 C -0.08 -1.14 0.62 -152.19 -0.09 -1.23 16 20 C 0.18 3.42 5.14 -4.04 -0.02 3.39 16 21 N -0.75 -17.83 4.73 -59.91 -0.28 -18.11 16 22 C -0.24 -6.90 10.47 -15.06 -0.16 -7.06 16 23 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 24 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 25 N -0.93 -29.84 13.97 55.49 0.78 -29.06 16 26 Si 0.88 22.54 27.74 -169.99 -4.71 17.83 16 27 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 28 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 29 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 30 C 0.12 1.78 5.79 -2.45 -0.01 1.77 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 37 H 0.10 1.56 6.58 -51.93 -0.34 1.22 16 38 H 0.19 0.90 6.55 -52.49 -0.34 0.56 16 39 H 0.08 0.60 5.54 -51.93 -0.29 0.31 16 40 H 0.07 0.54 7.61 -51.93 -0.40 0.14 16 41 H 0.06 0.42 7.74 -51.93 -0.40 0.01 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.08 1.16 7.96 -51.93 -0.41 0.75 16 46 H 0.06 0.91 7.79 -51.93 -0.40 0.50 16 47 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.36 8.37 4.77 -40.82 -0.19 8.17 16 50 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 51 H 0.07 0.91 7.67 -51.93 -0.40 0.52 16 52 H 0.09 1.83 7.03 -51.93 -0.37 1.47 16 LS Contribution 404.12 15.07 6.09 6.09 Total: -1.00 -36.24 404.12 -10.31 -46.54 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -9.83 Total: 7.02 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -2.51 Total: -4.01 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: 0.58 Total: -63.03 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.08 Total: -10.44 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.71 Total: 17.83 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.24 -10.31 -46.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112445143.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.824 kcal (2) G-P(sol) polarization free energy of solvation -36.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds