Wall clock time and date at job start Wed Apr 1 2020 04:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47336 * 2 1 4 4 C 1.50698 * 109.47316 * 180.02562 * 3 2 1 5 5 N 1.30449 * 125.98955 * 270.14555 * 4 3 2 6 6 N 1.39941 * 108.89710 * 180.26145 * 5 4 3 7 7 H 0.96999 * 125.75339 * 179.73956 * 6 5 4 8 8 C 1.34259 * 108.48755 * 359.75412 * 6 5 4 9 9 C 1.38041 * 107.41913 * 0.02562 * 8 6 5 10 10 C 1.47427 * 126.41215 * 179.97438 * 9 8 6 11 11 O 1.21606 * 119.99966 * 212.96925 * 10 9 8 12 12 N 1.34781 * 120.00098 * 32.96993 * 10 9 8 13 13 C 1.48117 * 127.84227 * 355.44742 * 12 10 9 14 14 C 1.54333 * 104.69251 * 140.29014 * 13 12 10 15 15 H 1.09002 * 112.59485 * 262.03327 * 14 13 12 16 16 C 1.54161 * 108.85988 * 137.44828 * 14 13 12 17 17 C 1.54845 * 104.32786 * 271.23975 * 16 14 13 18 18 C 1.55774 * 102.30888 * 321.12908 * 17 16 14 19 19 C 1.54158 * 103.88434 * 39.34896 * 18 17 16 20 20 C 1.53005 * 111.82293 * 212.53786 * 19 18 17 21 21 N 1.46496 * 109.46726 * 299.25550 * 20 19 18 22 22 C 1.36936 * 119.99797 * 179.97438 * 21 20 19 23 23 H 1.08002 * 119.99960 * 0.02562 * 22 21 20 24 24 C 1.38814 * 120.00022 * 180.02562 * 22 21 20 25 25 N 1.31625 * 119.99889 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 120.00258 * 0.02562 * 24 22 21 27 27 H 1.48497 * 109.47121 * 270.00290 * 26 24 22 28 28 H 1.48507 * 109.46821 * 29.99997 * 26 24 22 29 29 H 1.48500 * 109.47506 * 149.99920 * 26 24 22 30 30 C 1.48123 * 127.84362 * 175.49047 * 12 10 9 31 31 H 1.09007 * 109.47138 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46755 * 299.99509 * 1 2 3 33 33 H 1.08997 * 109.47071 * 59.99819 * 1 2 3 34 34 H 1.09009 * 109.46830 * 240.00062 * 2 1 3 35 35 H 1.09000 * 109.47309 * 120.00909 * 2 1 3 36 36 H 1.09009 * 109.47110 * 60.00234 * 3 2 1 37 37 H 1.09000 * 109.47664 * 300.00692 * 3 2 1 38 38 H 1.08001 * 126.28447 * 180.02562 * 8 6 5 39 39 H 1.08997 * 110.39125 * 21.48452 * 13 12 10 40 40 H 1.09000 * 110.38980 * 259.09460 * 13 12 10 41 41 H 1.09006 * 110.46272 * 29.95056 * 16 14 13 42 42 H 1.09002 * 110.46559 * 152.39824 * 16 14 13 43 43 H 1.09006 * 110.75715 * 80.12080 * 17 16 14 44 44 H 1.08995 * 110.75899 * 203.31488 * 17 16 14 45 45 H 1.08994 * 111.74818 * 280.25067 * 18 17 16 46 46 H 1.09005 * 109.59545 * 157.39374 * 18 17 16 47 47 H 1.08995 * 109.47005 * 179.25611 * 20 19 18 48 48 H 1.08992 * 109.46980 * 59.25328 * 20 19 18 49 49 H 0.97000 * 120.00564 * 0.02562 * 21 20 19 50 50 H 0.97003 * 119.99964 * 180.02562 * 25 24 22 51 51 H 1.08994 * 110.39317 * 100.90780 * 30 12 10 52 52 H 1.08995 * 110.39074 * 338.51239 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3140 1.4396 1.0545 6 7 5.6514 1.4467 0.6427 7 1 6.4248 1.4500 1.2282 8 6 5.6836 1.4486 -0.6995 9 6 4.3768 1.4433 -1.1442 10 6 3.9305 1.4436 -2.5493 11 8 2.9017 2.0124 -2.8603 12 7 4.6627 0.8134 -3.4891 13 6 5.9775 0.1516 -3.3241 14 6 5.8838 -1.1254 -4.1858 15 1 5.6366 -2.0097 -3.5985 16 6 7.2053 -1.3023 -4.9597 17 6 6.9887 -0.5123 -6.2737 18 6 5.5031 -0.8343 -6.6137 19 6 4.7966 -0.8110 -5.2438 20 6 3.6371 -1.8077 -5.1847 21 7 2.6434 -1.4616 -6.2040 22 6 1.5105 -2.2185 -6.3404 23 1 1.3493 -3.0704 -5.6964 24 6 0.5691 -1.8909 -7.3066 25 7 -0.5201 -2.6182 -7.4374 26 14 0.8481 -0.4180 -8.4210 27 1 0.2625 0.7945 -7.7948 28 1 2.3060 -0.2172 -8.6203 29 1 0.1978 -0.6603 -9.7339 30 6 4.3357 0.6262 -4.9216 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5139 -0.8901 35 1 1.8934 -0.5140 0.8899 36 1 1.6767 1.9563 0.8901 37 1 1.6767 1.9564 -0.8899 38 1 6.5692 1.4533 -1.3176 39 1 6.1438 -0.1072 -2.2784 40 1 6.7762 0.7977 -3.6881 41 1 8.0371 -0.8814 -4.3947 42 1 7.3846 -2.3564 -5.1717 43 1 7.1401 0.5551 -6.1121 44 1 7.6490 -0.8801 -7.0589 45 1 5.3987 -1.8141 -7.0796 46 1 5.1001 -0.0574 -7.2635 47 1 3.1747 -1.7690 -4.1985 48 1 4.0130 -2.8137 -5.3706 49 1 2.7883 -0.6967 -6.7827 50 1 -1.1778 -2.3895 -8.1128 51 1 4.8804 1.3457 -5.5327 52 1 3.2622 0.7257 -5.0822 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112445143.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:55 Heat of formation + Delta-G solvation = 17.730221 kcal Electronic energy + Delta-G solvation = -32151.057232 eV Core-core repulsion = 28150.697954 eV Total energy + Delta-G solvation = -4000.359278 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.54503 -41.48124 -39.39293 -36.67086 -36.27637 -35.50094 -33.71981 -32.62269 -31.96010 -31.07855 -30.25403 -28.19495 -27.40697 -26.54143 -25.42590 -23.84311 -23.13798 -22.87856 -21.40160 -20.97252 -20.37234 -20.20722 -19.45460 -18.55408 -17.64968 -17.04431 -16.63864 -16.43252 -16.29017 -16.06928 -15.83831 -15.47979 -15.37781 -15.11830 -14.96344 -14.79789 -14.55925 -14.29078 -14.04230 -13.78424 -13.64418 -13.48725 -13.23210 -13.01648 -12.99471 -12.80086 -12.52910 -12.26524 -12.20527 -12.04951 -11.93949 -11.81016 -11.72601 -11.67116 -11.62931 -11.51526 -11.46643 -11.35554 -11.01380 -10.85786 -10.52528 -9.91277 -9.60005 -9.31580 -8.05622 -5.38079 0.58182 1.05919 1.31315 1.38069 1.42867 1.71307 2.01419 2.31544 2.44977 3.25828 3.27359 3.39383 3.54357 3.65905 3.68652 3.89692 4.00224 4.08688 4.11562 4.20646 4.22266 4.26591 4.30571 4.33978 4.45512 4.50030 4.54550 4.56563 4.70389 4.75976 4.77268 4.78662 4.80135 4.89960 4.92678 4.96181 5.04077 5.07976 5.15927 5.22689 5.23409 5.30838 5.33311 5.34565 5.37780 5.39896 5.51768 5.58582 5.72165 6.18430 6.27107 6.49491 6.66240 7.05252 7.22998 7.81365 8.00839 9.16307 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009032 B = 0.004262 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3099.198981 B = 6568.865755 C = 8733.479421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.105 4.105 3 C -0.049 4.049 4 C 0.120 3.880 5 N -0.315 5.315 6 N -0.443 5.443 7 H 0.463 0.537 8 C 0.134 3.866 9 C -0.310 4.310 10 C 0.604 3.396 11 O -0.590 6.590 12 N -0.616 5.616 13 C 0.100 3.900 14 C -0.093 4.093 15 H 0.083 0.917 16 C -0.104 4.104 17 C -0.114 4.114 18 C -0.113 4.113 19 C -0.076 4.076 20 C 0.178 3.822 21 N -0.752 5.752 22 C -0.234 4.234 23 H 0.052 0.948 24 C -0.060 4.060 25 N -0.983 5.983 26 Si 0.947 3.053 27 H -0.287 1.287 28 H -0.245 1.245 29 H -0.289 1.289 30 C 0.116 3.884 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.035 0.965 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.235 0.765 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.103 0.897 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.001 0.999 48 H 0.028 0.972 49 H 0.365 0.635 50 H 0.258 0.742 51 H 0.090 0.910 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.533 8.916 15.051 30.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.144 4.144 3 C -0.088 4.088 4 C -0.047 4.047 5 N -0.137 5.137 6 N -0.149 5.149 7 H 0.312 0.688 8 C -0.020 4.020 9 C -0.325 4.325 10 C 0.395 3.605 11 O -0.471 6.471 12 N -0.348 5.348 13 C -0.021 4.021 14 C -0.113 4.113 15 H 0.102 0.898 16 C -0.142 4.142 17 C -0.152 4.152 18 C -0.151 4.151 19 C -0.077 4.077 20 C 0.052 3.948 21 N -0.397 5.397 22 C -0.365 4.365 23 H 0.070 0.930 24 C -0.251 4.251 25 N -0.633 5.633 26 Si 0.774 3.226 27 H -0.214 1.214 28 H -0.169 1.169 29 H -0.215 1.215 30 C -0.007 4.007 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.093 0.907 38 H 0.251 0.749 39 H 0.119 0.881 40 H 0.131 0.869 41 H 0.122 0.878 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.019 0.981 48 H 0.046 0.954 49 H 0.199 0.801 50 H 0.067 0.933 51 H 0.108 0.892 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 24.857 9.098 16.335 31.105 hybrid contribution -0.959 0.404 -1.668 1.966 sum 23.899 9.502 14.668 29.607 Atomic orbital electron populations 1.21741 0.94624 1.02194 1.02124 1.21315 0.96739 0.95113 1.01195 1.20169 0.86357 0.98435 1.03821 1.22403 0.97061 0.95889 0.89361 1.77090 0.87748 1.26817 1.22086 1.46099 1.07312 1.55697 1.05822 0.68784 1.23739 0.98473 0.94140 0.85626 1.20123 0.94314 1.25416 0.92666 1.17314 0.81981 0.77134 0.84042 1.90758 1.27041 1.46943 1.82392 1.48822 1.22245 1.54938 1.08796 1.23061 0.84083 0.93064 1.01917 1.22712 0.95008 0.98052 0.95498 0.89834 1.22354 0.95251 1.01139 0.95448 1.22653 0.93568 1.01009 0.97947 1.22525 0.96793 1.01465 0.94302 1.22222 0.94774 0.93073 0.97619 1.20637 0.88187 0.96065 0.89950 1.42645 1.21586 1.34256 1.41234 1.19011 0.96334 1.07359 1.13755 0.92960 1.25442 0.96368 1.01982 1.01322 1.69881 1.12023 1.43116 1.38330 0.85518 0.79120 0.79504 0.78420 1.21390 1.16950 1.21526 1.22395 1.00297 0.96257 0.81750 0.92273 0.90595 0.94011 0.94637 0.90882 0.88874 0.90731 0.74918 0.88108 0.86894 0.87824 0.91181 0.89957 0.90290 0.92030 0.92727 0.98135 0.95426 0.80136 0.93317 0.89237 0.93979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.92 9.91 71.98 0.71 -3.21 16 2 C -0.11 -2.93 5.92 30.59 0.18 -2.75 16 3 C -0.05 -1.36 5.57 29.84 0.17 -1.19 16 4 C 0.12 3.20 6.51 43.51 0.28 3.48 16 5 N -0.31 -7.02 12.63 -46.68 -0.59 -7.61 16 6 N -0.44 -5.49 7.29 -56.32 -0.41 -5.90 16 7 H 0.46 1.65 8.96 -213.42 -1.91 -0.27 16 8 C 0.13 1.71 10.03 84.28 0.85 2.56 16 9 C -0.31 -7.66 5.77 -20.15 -0.12 -7.77 16 10 C 0.60 19.36 7.74 86.66 0.67 20.03 16 11 O -0.59 -25.14 15.73 -4.05 -0.06 -25.20 16 12 N -0.62 -16.16 3.31 -812.19 -2.69 -18.85 16 13 C 0.10 1.42 5.27 86.52 0.46 1.87 16 14 C -0.09 -1.68 3.58 -9.29 -0.03 -1.71 16 15 H 0.08 1.65 7.88 -2.39 -0.02 1.64 16 16 C -0.10 -1.21 6.08 31.62 0.19 -1.02 16 17 C -0.11 -1.63 6.86 32.18 0.22 -1.41 16 18 C -0.11 -2.76 5.19 31.94 0.17 -2.60 16 19 C -0.08 -2.10 0.62 -50.68 -0.03 -2.14 16 20 C 0.18 7.12 5.14 86.38 0.44 7.57 16 21 N -0.75 -37.16 4.73 -343.46 -1.63 -38.79 16 22 C -0.23 -14.13 10.47 84.03 0.88 -13.25 16 23 H 0.05 3.47 8.06 -2.91 -0.02 3.45 16 24 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 25 N -0.98 -65.66 13.97 21.65 0.30 -65.36 16 26 Si 0.95 47.94 27.74 68.60 1.90 49.85 16 27 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 28 H -0.25 -10.99 6.52 99.48 0.65 -10.34 16 29 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 30 C 0.12 3.53 5.79 86.52 0.50 4.03 16 31 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 37 H 0.07 2.51 6.58 -2.39 -0.02 2.50 16 38 H 0.23 0.54 6.55 -2.91 -0.02 0.52 16 39 H 0.10 0.97 5.54 -2.39 -0.01 0.96 16 40 H 0.11 0.81 7.61 -2.39 -0.02 0.79 16 41 H 0.10 0.51 7.74 -2.38 -0.02 0.49 16 42 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 44 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.06 1.73 7.96 -2.39 -0.02 1.71 16 46 H 0.05 1.43 7.79 -2.38 -0.02 1.41 16 47 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 48 H 0.03 1.11 8.14 -2.39 -0.02 1.10 16 49 H 0.37 17.30 4.77 -92.71 -0.44 16.86 16 50 H 0.26 16.38 8.31 -92.71 -0.77 15.61 16 51 H 0.09 2.29 7.67 -2.39 -0.02 2.27 16 52 H 0.04 1.72 7.03 -2.39 -0.02 1.70 16 Total: -1.00 -89.14 404.12 1.35 -87.78 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: -1.48 Total: 24.82 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 6.01 Total: -0.74 kcal Atomic # 7 Polarization: -131.50 SS G_CDS: -5.01 Total: -136.51 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.06 Total: -25.20 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 1.90 Total: 49.85 kcal Total: -89.14 1.35 -87.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112445143.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.514 kcal (2) G-P(sol) polarization free energy of solvation -89.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds