Wall clock time and date at job start Wed Apr 1 2020 06:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 120.00314 * 2 1 4 4 C 1.53000 * 109.47367 * 240.00449 * 3 2 1 5 5 C 1.52996 * 109.46985 * 120.00329 * 3 2 1 6 6 C 1.52994 * 109.47118 * 60.00264 * 5 3 2 7 7 C 1.50702 * 109.46811 * 0.02562 * 3 2 1 8 8 O 1.21283 * 120.00262 * 120.00111 * 7 3 2 9 9 N 1.34777 * 119.99928 * 299.72017 * 7 3 2 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 3 11 11 C 1.50694 * 109.47550 * 180.02562 * 10 9 7 12 12 C 1.35319 * 126.04476 * 260.02840 * 11 10 9 13 13 N 1.34945 * 107.74793 * 179.97438 * 12 11 10 14 14 H 0.97000 * 126.03284 * 179.97438 * 13 12 11 15 15 N 1.40085 * 107.92503 * 359.97438 * 13 12 11 16 16 C 1.30838 * 108.20588 * 359.72056 * 15 13 12 17 17 C 1.50700 * 125.89581 * 180.25668 * 16 15 13 18 18 H 1.09007 * 110.63393 * 181.89621 * 17 16 15 19 19 C 1.55152 * 110.72335 * 305.23332 * 17 16 15 20 20 C 1.54913 * 101.58089 * 153.86734 * 19 17 16 21 21 N 1.47422 * 104.83004 * 322.99290 * 20 19 17 22 22 C 1.36944 * 125.64571 * 204.09559 * 21 20 19 23 23 H 1.08002 * 119.99868 * 180.02562 * 22 21 20 24 24 C 1.38810 * 120.00058 * 0.03752 * 22 21 20 25 25 N 1.31626 * 119.99756 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00257 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46984 * 359.97438 * 26 24 22 28 28 H 1.48492 * 109.47362 * 120.00014 * 26 24 22 29 29 H 1.48504 * 109.47080 * 240.00540 * 26 24 22 30 30 C 1.47024 * 108.70617 * 24.12886 * 21 20 19 31 31 H 1.08005 * 119.99624 * 359.97438 * 1 2 3 32 32 H 1.07998 * 120.00000 * 180.02562 * 1 2 3 33 33 H 1.08004 * 120.00075 * 180.02562 * 2 1 3 34 34 H 1.08996 * 109.46783 * 179.97438 * 4 3 2 35 35 H 1.08994 * 109.47175 * 299.99972 * 4 3 2 36 36 H 1.09001 * 109.46739 * 59.99660 * 4 3 2 37 37 H 1.09004 * 109.47066 * 180.02562 * 5 3 2 38 38 H 1.09000 * 109.47234 * 299.99730 * 5 3 2 39 39 H 1.08998 * 109.46965 * 299.99512 * 6 5 3 40 40 H 1.09003 * 109.47184 * 60.00331 * 6 5 3 41 41 H 1.09001 * 109.47062 * 179.97438 * 6 5 3 42 42 H 0.97000 * 120.00317 * 0.28382 * 9 7 3 43 43 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 44 44 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 45 45 H 1.08001 * 126.12203 * 359.97438 * 12 11 10 46 46 H 1.08994 * 111.00614 * 271.94498 * 19 17 16 47 47 H 1.09005 * 110.99980 * 35.79387 * 19 17 16 48 48 H 1.09003 * 110.36416 * 204.15749 * 20 19 17 49 49 H 1.08992 * 110.45527 * 81.88005 * 20 19 17 50 50 H 0.96999 * 119.99864 * 179.97438 * 25 24 22 51 51 H 1.09001 * 109.87832 * 239.52214 * 30 21 20 52 52 H 1.09003 * 110.00792 * 118.43379 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9432 1.3862 -1.2493 5 6 2.9432 1.3860 1.2492 6 6 3.9374 0.2231 1.2491 7 6 1.0843 2.4505 0.0006 8 8 1.0897 3.2526 0.9104 9 7 0.2062 2.5869 -1.0127 10 6 -0.7418 3.7038 -1.0151 11 6 -1.6054 3.6271 -2.2477 12 6 -1.4405 4.3471 -3.3815 13 7 -2.4149 3.9870 -4.2429 14 1 -2.5455 4.3402 -5.1368 15 7 -3.2045 3.0131 -3.6179 16 6 -2.7147 2.7936 -2.4247 17 6 -3.2553 1.8154 -1.4138 18 1 -2.6771 1.8581 -0.4907 19 6 -4.7581 2.0853 -1.1380 20 6 -5.2485 0.6854 -0.6911 21 7 -4.5012 -0.2637 -1.5361 22 6 -4.8964 -1.5374 -1.8473 23 1 -4.2750 -2.1569 -2.4770 24 6 -6.0957 -2.0321 -1.3536 25 7 -6.8533 -1.2768 -0.5868 26 14 -6.6345 -3.7698 -1.7775 27 1 -5.6139 -4.4058 -2.6487 28 1 -6.7827 -4.5605 -0.5294 29 1 -7.9355 -3.7242 -2.4921 30 6 -3.2610 0.3833 -1.9888 31 1 -0.5400 0.9354 0.0004 32 1 -0.5400 -0.9353 0.0004 33 1 1.8501 -0.9353 -0.0004 34 1 3.4878 2.3303 -1.2494 35 1 3.6514 0.5577 -1.2494 36 1 2.3164 1.3285 -2.1392 37 1 3.4880 2.3302 1.2494 38 1 2.3166 1.3283 2.1392 39 1 3.3924 -0.7208 1.2491 40 1 4.5641 0.2809 0.3591 41 1 4.5644 0.2810 2.1388 42 1 0.2017 1.9455 -1.7403 43 1 -1.3712 3.6482 -0.1269 44 1 -0.1934 4.6458 -1.0133 45 1 -0.6674 5.0788 -3.5643 46 1 -4.8836 2.8165 -0.3395 47 1 -5.2700 2.4075 -2.0448 48 1 -6.3199 0.5856 -0.8647 49 1 -5.0182 0.5191 0.3612 50 1 -7.6916 -1.6223 -0.2422 51 1 -3.2388 0.4210 -3.0779 52 1 -2.3963 -0.1680 -1.6193 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130420630.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:44:09 Heat of formation + Delta-G solvation = 59.135481 kcal Electronic energy + Delta-G solvation = -31753.724454 eV Core-core repulsion = 27755.160643 eV Total energy + Delta-G solvation = -3998.563811 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.38904 -41.35729 -39.02604 -37.52332 -36.14042 -34.89336 -33.13752 -32.68073 -31.63057 -30.90551 -30.17982 -29.14604 -26.96814 -26.60990 -25.86740 -23.42339 -22.77032 -22.25453 -22.04831 -21.35089 -20.10535 -19.81478 -18.83486 -18.72084 -17.54774 -17.06577 -16.88249 -16.82409 -16.33036 -15.74299 -15.69505 -15.30604 -15.21242 -14.98789 -14.69839 -14.50970 -14.24757 -14.02429 -13.82750 -13.58406 -13.46407 -13.40341 -13.20116 -13.01642 -12.93031 -12.83653 -12.73511 -12.55254 -12.46497 -12.31457 -11.97335 -11.89176 -11.73042 -11.72251 -11.63693 -11.34440 -11.18441 -10.79067 -10.73459 -10.32928 -10.29013 -9.92243 -9.54436 -8.85465 -7.75024 -5.19066 0.96386 1.33072 1.46515 1.48099 1.52189 1.58304 1.67141 2.02475 2.49846 2.52144 3.34511 3.54929 3.65840 3.73758 3.76963 3.83494 4.01658 4.04095 4.12238 4.14630 4.20696 4.33425 4.39628 4.51774 4.56076 4.66084 4.66432 4.69272 4.75599 4.78363 4.89212 4.91227 5.03342 5.04454 5.06074 5.10134 5.14307 5.14991 5.23763 5.34203 5.36548 5.47543 5.48420 5.55627 5.57309 5.65339 5.67532 5.76546 5.81793 6.32173 6.50856 6.58581 6.77330 7.12620 7.26527 7.80027 8.44827 9.27372 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009478 B = 0.003501 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2953.432640 B = 7995.698655 C = 9998.128391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.137 4.137 3 C -0.048 4.048 4 C -0.135 4.135 5 C -0.094 4.094 6 C -0.150 4.150 7 C 0.522 3.478 8 O -0.580 6.580 9 N -0.712 5.712 10 C 0.205 3.795 11 C -0.273 4.273 12 C 0.108 3.892 13 N -0.465 5.465 14 H 0.454 0.546 15 N -0.324 5.324 16 C 0.104 3.896 17 C -0.010 4.010 18 H 0.092 0.908 19 C -0.119 4.119 20 C 0.157 3.843 21 N -0.622 5.622 22 C -0.234 4.234 23 H 0.080 0.920 24 C -0.067 4.067 25 N -0.949 5.949 26 Si 0.979 3.021 27 H -0.266 1.266 28 H -0.291 1.291 29 H -0.292 1.292 30 C 0.154 3.846 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.140 0.860 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.408 0.592 43 H 0.054 0.946 44 H 0.088 0.912 45 H 0.226 0.774 46 H 0.080 0.920 47 H 0.056 0.944 48 H 0.072 0.928 49 H -0.009 1.009 50 H 0.246 0.754 51 H 0.017 0.983 52 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.691 11.530 -5.064 25.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.155 4.155 3 C -0.051 4.051 4 C -0.192 4.192 5 C -0.132 4.132 6 C -0.207 4.207 7 C 0.309 3.691 8 O -0.459 6.459 9 N -0.364 5.364 10 C 0.081 3.919 11 C -0.285 4.285 12 C -0.043 4.043 13 N -0.173 5.173 14 H 0.301 0.699 15 N -0.147 5.147 16 C -0.063 4.063 17 C -0.031 4.031 18 H 0.110 0.890 19 C -0.158 4.158 20 C 0.032 3.968 21 N -0.348 5.348 22 C -0.363 4.363 23 H 0.098 0.902 24 C -0.260 4.260 25 N -0.599 5.599 26 Si 0.808 3.192 27 H -0.191 1.191 28 H -0.218 1.218 29 H -0.219 1.219 30 C 0.028 3.972 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.158 0.842 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.244 0.756 43 H 0.073 0.927 44 H 0.106 0.894 45 H 0.242 0.758 46 H 0.098 0.902 47 H 0.075 0.925 48 H 0.090 0.910 49 H 0.009 0.991 50 H 0.056 0.944 51 H 0.035 0.965 52 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 21.627 11.677 -5.274 25.137 hybrid contribution -0.614 -0.877 -0.043 1.071 sum 21.013 10.800 -5.317 24.217 Atomic orbital electron populations 1.24313 0.96826 1.02652 1.00742 1.22841 0.94930 0.97603 1.00119 1.20034 0.94736 0.90545 0.99759 1.21886 0.99390 1.03896 0.94046 1.21290 0.96929 1.00055 0.94935 1.21878 0.98610 0.97400 1.02862 1.20886 0.81106 0.86064 0.81002 1.90670 1.72307 1.45836 1.37119 1.46361 1.35068 1.29950 1.25013 1.19314 0.88959 0.89981 0.93649 1.19921 1.02372 1.06793 0.99370 1.23020 0.93682 0.98963 0.88594 1.46343 1.22606 1.31837 1.16497 0.69880 1.77437 1.18549 1.09304 1.09413 1.21869 0.94688 0.96890 0.92821 1.20453 0.96123 0.91436 0.95063 0.88962 1.22872 0.94264 0.97864 1.00800 1.21680 0.98391 0.85751 0.91003 1.44745 1.20502 1.12113 1.57449 1.19466 1.02835 0.89158 1.24864 0.90250 1.25616 0.97605 1.02442 1.00300 1.70068 1.13988 1.36513 1.39373 0.84992 0.77765 0.79333 0.77152 1.19057 1.21829 1.21943 1.21307 0.88780 0.91110 0.96001 0.88685 0.88684 0.84194 0.91457 0.89127 0.91548 0.91619 0.93536 0.92150 0.90728 0.92101 0.75564 0.92744 0.89431 0.75812 0.90188 0.92526 0.91045 0.99112 0.94407 0.96520 0.95193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.28 13.17 67.78 0.89 -4.39 16 2 C -0.14 -2.71 8.00 25.64 0.21 -2.50 16 3 C -0.05 -0.89 0.62 -53.67 -0.03 -0.92 16 4 C -0.14 -1.70 8.00 71.98 0.58 -1.13 16 5 C -0.09 -1.77 4.27 30.59 0.13 -1.64 16 6 C -0.15 -1.97 9.30 71.98 0.67 -1.30 16 7 C 0.52 12.59 5.33 87.66 0.47 13.05 16 8 O -0.58 -18.29 15.98 -3.04 -0.05 -18.34 16 9 N -0.71 -14.95 3.73 -466.79 -1.74 -16.69 16 10 C 0.20 4.38 5.66 85.63 0.48 4.87 16 11 C -0.27 -5.93 5.47 -20.14 -0.11 -6.04 16 12 C 0.11 1.59 11.90 83.54 0.99 2.58 16 13 N -0.47 -8.68 7.36 -57.59 -0.42 -9.10 16 14 H 0.45 5.23 8.96 -213.33 -1.91 3.32 16 15 N -0.32 -9.94 12.34 -47.38 -0.58 -10.53 16 16 C 0.10 3.14 5.76 43.10 0.25 3.39 16 17 C -0.01 -0.36 3.36 -10.35 -0.03 -0.40 16 18 H 0.09 3.20 7.19 -2.38 -0.02 3.18 16 19 C -0.12 -4.87 6.52 31.99 0.21 -4.66 16 20 C 0.16 8.15 5.89 86.86 0.51 8.67 16 21 N -0.62 -33.36 3.39 -691.99 -2.35 -35.71 16 22 C -0.23 -13.53 10.27 84.03 0.86 -12.67 16 23 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 24 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 25 N -0.95 -58.09 10.09 21.65 0.22 -57.87 16 26 Si 0.98 46.68 29.55 68.60 2.03 48.71 16 27 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 28 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 29 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 30 C 0.15 6.66 6.83 86.73 0.59 7.25 16 31 H 0.10 2.68 5.11 -2.91 -0.01 2.66 16 32 H 0.09 2.63 8.06 -2.91 -0.02 2.61 16 33 H 0.14 2.21 7.00 -2.91 -0.02 2.19 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.09 0.84 6.43 -2.39 -0.02 0.83 16 36 H 0.07 0.78 7.56 -2.39 -0.02 0.76 16 37 H 0.07 1.27 8.10 -2.38 -0.02 1.25 16 38 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 39 H 0.06 0.78 6.62 -2.39 -0.02 0.76 16 40 H 0.07 0.73 6.43 -2.39 -0.02 0.71 16 41 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.41 7.94 7.22 -92.71 -0.67 7.27 16 43 H 0.05 1.41 7.71 -2.39 -0.02 1.40 16 44 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.23 0.99 8.06 -2.91 -0.02 0.97 16 46 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 47 H 0.06 2.43 7.88 -2.38 -0.02 2.41 16 48 H 0.07 4.23 5.87 -2.39 -0.01 4.21 16 49 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 50 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 51 H 0.02 0.76 7.68 -2.39 -0.02 0.74 16 52 H 0.03 1.25 8.13 -2.39 -0.02 1.23 16 Total: -1.00 -77.72 408.54 2.59 -75.14 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: -1.64 Total: 23.66 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 7.13 Total: 0.73 kcal Atomic # 7 Polarization: -125.02 SS G_CDS: -4.88 Total: -129.90 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.05 Total: -18.34 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -77.72 2.59 -75.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130420630.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.271 kcal (2) G-P(sol) polarization free energy of solvation -77.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds