Wall clock time and date at job start Wed Apr 1 2020 04:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47077 * 2 1 4 4 C 1.53006 * 109.46769 * 176.06355 * 3 2 1 5 5 C 1.50694 * 115.55061 * 294.74928 * 4 3 2 6 6 O 1.21283 * 119.99680 * 122.76204 * 5 4 3 7 7 N 1.34778 * 120.00331 * 302.75625 * 5 4 3 8 8 C 1.46498 * 120.00133 * 174.79780 * 7 5 4 9 9 C 1.50694 * 109.47058 * 180.02562 * 8 7 5 10 10 C 1.35319 * 126.04333 * 260.02227 * 9 8 7 11 11 N 1.34942 * 107.74808 * 180.02562 * 10 9 8 12 12 H 0.96998 * 126.03995 * 180.02562 * 11 10 9 13 13 N 1.40091 * 107.92701 * 0.02562 * 11 10 9 14 14 C 1.30837 * 108.20112 * 359.71514 * 13 11 10 15 15 C 1.50704 * 125.89872 * 180.25565 * 14 13 11 16 16 H 1.08997 * 110.88861 * 176.33082 * 15 14 13 17 17 C 1.55153 * 111.00591 * 300.21835 * 15 14 13 18 18 C 1.54323 * 102.94531 * 153.57088 * 17 15 14 19 19 N 1.47022 * 107.27074 * 337.80917 * 18 17 15 20 20 C 1.36932 * 125.64708 * 178.98594 * 19 18 17 21 21 H 1.08010 * 119.99590 * 185.55833 * 20 19 18 22 22 C 1.38803 * 120.00181 * 5.55502 * 20 19 18 23 23 N 1.31618 * 120.00363 * 5.95806 * 22 20 19 24 24 Si 1.86807 * 120.00139 * 185.95576 * 22 20 19 25 25 H 1.48497 * 109.47068 * 94.99575 * 24 22 20 26 26 H 1.48500 * 109.47406 * 214.99725 * 24 22 20 27 27 H 1.48503 * 109.46936 * 334.99883 * 24 22 20 28 28 C 1.47426 * 108.70189 * 358.93708 * 19 18 17 29 29 C 1.53006 * 117.49716 * 80.42419 * 4 3 2 30 30 C 1.53005 * 117.49461 * 149.08060 * 4 3 2 31 31 H 1.09000 * 109.47528 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47106 * 299.99809 * 1 2 3 33 33 H 1.08998 * 109.47114 * 59.99720 * 1 2 3 34 34 H 1.09003 * 109.46710 * 240.00000 * 2 1 3 35 35 H 1.08998 * 109.47114 * 120.00280 * 2 1 3 36 36 H 1.08999 * 109.47228 * 56.06769 * 3 2 1 37 37 H 1.09002 * 109.47709 * 296.06314 * 3 2 1 38 38 H 0.97000 * 119.99564 * 354.80271 * 7 5 4 39 39 H 1.08997 * 109.47200 * 300.00780 * 8 7 5 40 40 H 1.09006 * 109.46956 * 60.00233 * 8 7 5 41 41 H 1.08004 * 126.12208 * 359.97438 * 10 9 8 42 42 H 1.08999 * 110.72005 * 271.94198 * 17 15 14 43 43 H 1.09007 * 110.71911 * 35.20410 * 17 15 14 44 44 H 1.09003 * 109.87531 * 97.22246 * 18 17 15 45 45 H 1.08996 * 109.88172 * 218.23427 * 18 17 15 46 46 H 0.96996 * 120.00386 * 179.97438 * 23 22 20 47 47 H 1.08997 * 110.36704 * 265.29299 * 28 19 18 48 48 H 1.09000 * 110.36685 * 142.96616 * 28 19 18 49 49 H 1.08997 * 117.49682 * 215.00056 * 29 4 3 50 50 H 1.08998 * 117.49674 * 0.02562 * 29 4 3 51 51 H 1.09000 * 117.50087 * 359.97438 * 30 4 3 52 52 H 1.09000 * 117.49825 * 144.97561 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5668 1.4435 0.0990 5 6 4.1350 0.9032 1.3859 6 8 4.9132 -0.0268 1.3619 7 7 3.7786 1.4534 2.5635 8 6 4.2400 0.8577 3.8199 9 6 3.7055 1.6564 4.9806 10 6 4.3876 2.5860 5.6887 11 7 3.5599 3.0681 6.6392 12 1 3.7789 3.7483 7.2951 13 7 2.3284 2.4126 6.5114 14 6 2.4151 1.5710 5.5134 15 6 1.3156 0.6633 5.0249 16 1 1.6317 0.1118 4.1395 17 6 0.8530 -0.3035 6.1467 18 6 -0.6055 -0.6180 5.7523 19 7 -1.0694 0.4766 4.8873 20 6 -2.3068 0.5660 4.3077 21 1 -2.5221 1.3662 3.6150 22 6 -3.2844 -0.3718 4.6103 23 7 -3.0631 -1.2765 5.5403 24 14 -4.9142 -0.3499 3.6977 25 1 -4.8563 -1.3005 2.5584 26 1 -6.0047 -0.7513 4.6223 27 1 -5.1771 1.0195 3.1870 28 6 0.0178 1.4626 4.7483 29 6 4.3582 1.1877 -1.1852 30 6 4.3178 2.5921 -0.5776 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8932 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 1.6202 1.9762 0.8526 37 1 1.7354 1.9356 -0.9231 38 1 3.2165 2.2437 2.5791 39 1 3.8801 -0.1688 3.8890 40 1 5.3298 0.8631 3.8458 41 1 5.4115 2.8875 5.5233 42 1 1.4568 -1.2110 6.1470 43 1 0.8923 0.1873 7.1193 44 1 -0.6472 -1.5624 5.2097 45 1 -1.2268 -0.6762 6.6460 46 1 -3.7463 -1.9316 5.7521 47 1 -0.0989 2.2617 5.4804 48 1 0.0321 1.8715 3.7381 49 1 5.2898 0.6285 -1.0993 50 1 3.7911 1.0190 -2.1007 51 1 3.7241 3.3467 -1.0937 52 1 5.2226 2.9571 -0.0918 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130421215.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:23 Heat of formation + Delta-G solvation = 72.032727 kcal Electronic energy + Delta-G solvation = -31724.215914 eV Core-core repulsion = 27726.211369 eV Total energy + Delta-G solvation = -3998.004544 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 10.01 seconds Orbital eigenvalues (eV) -41.36097 -40.13940 -37.28567 -37.13600 -34.99513 -33.69804 -33.06262 -31.32881 -30.70341 -29.09731 -27.59802 -27.45695 -26.01539 -24.61814 -22.95173 -22.73831 -22.07053 -21.36739 -20.33849 -19.98686 -19.42148 -18.76377 -17.95215 -16.85789 -16.76125 -16.05044 -15.54691 -15.01411 -14.92068 -14.63430 -14.44902 -14.37018 -14.16267 -13.98409 -13.53755 -13.28601 -12.89988 -12.81475 -12.48016 -12.30407 -12.15903 -12.13864 -11.83362 -11.75538 -11.67899 -11.65271 -11.16449 -10.93214 -10.81001 -10.77776 -10.63525 -10.57603 -10.44979 -10.08363 -10.07392 -9.98607 -9.81568 -9.73293 -9.55229 -9.12253 -9.02781 -8.62564 -8.54492 -6.75116 -5.64566 -2.99100 1.81975 2.54892 2.61462 2.85981 3.38597 3.43381 3.48297 3.50498 3.59183 4.43262 4.52791 4.61927 4.65334 4.70090 4.70903 4.86107 5.12540 5.21870 5.26441 5.29237 5.38165 5.41467 5.45648 5.52086 5.56568 5.67821 5.72503 5.77293 5.82552 5.85539 5.89028 5.92836 5.95313 5.97237 6.02852 6.07193 6.29891 6.38341 6.42022 6.44812 6.49825 6.57578 6.59751 6.69365 6.75658 7.00022 7.25288 7.54711 7.57604 7.73237 7.76956 7.89044 8.24858 8.32539 9.27403 9.88494 10.55355 11.46174 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008211 B = 0.004157 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3409.130225 B = 6734.554336 C = 9357.248342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.076 4.076 4 C -0.157 4.157 5 C 0.553 3.447 6 O -0.543 6.543 7 N -0.717 5.717 8 C 0.202 3.798 9 C -0.261 4.261 10 C 0.075 3.925 11 N -0.481 5.481 12 H 0.438 0.562 13 N -0.281 5.281 14 C 0.122 3.878 15 C -0.031 4.031 16 H 0.090 0.910 17 C -0.131 4.131 18 C 0.175 3.825 19 N -0.602 5.602 20 C -0.225 4.225 21 H 0.076 0.924 22 C -0.007 4.007 23 N -0.920 5.920 24 Si 0.908 3.092 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.281 1.281 28 C 0.152 3.848 29 C -0.144 4.144 30 C -0.160 4.160 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.402 0.598 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.174 0.826 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.032 0.968 45 H 0.057 0.943 46 H 0.251 0.749 47 H 0.025 0.975 48 H 0.035 0.965 49 H 0.103 0.897 50 H 0.101 0.899 51 H 0.103 0.897 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.072 9.310 -7.119 21.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.114 4.114 4 C -0.160 4.160 5 C 0.339 3.661 6 O -0.420 6.420 7 N -0.368 5.368 8 C 0.079 3.921 9 C -0.274 4.274 10 C -0.074 4.074 11 N -0.187 5.187 12 H 0.282 0.718 13 N -0.103 5.103 14 C -0.047 4.047 15 C -0.053 4.053 16 H 0.108 0.892 17 C -0.170 4.170 18 C 0.051 3.949 19 N -0.328 5.328 20 C -0.353 4.353 21 H 0.094 0.906 22 C -0.203 4.203 23 N -0.567 5.567 24 Si 0.738 3.262 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 C 0.025 3.975 29 C -0.182 4.182 30 C -0.197 4.197 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.237 0.763 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.191 0.809 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.051 0.949 45 H 0.075 0.925 46 H 0.062 0.938 47 H 0.043 0.957 48 H 0.054 0.946 49 H 0.121 0.879 50 H 0.120 0.880 51 H 0.121 0.879 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 17.663 8.986 -6.175 20.757 hybrid contribution -0.413 0.423 -0.548 0.806 sum 17.250 9.409 -6.723 20.768 Atomic orbital electron populations 1.21761 0.94914 1.02269 1.02095 1.21449 0.96348 0.95712 1.02142 1.21156 0.89246 0.98226 1.02768 1.21559 0.95970 1.05656 0.92793 1.19463 0.80293 0.82330 0.84033 1.90684 1.35073 1.28899 1.87360 1.46088 1.53461 1.32132 1.05169 1.19373 0.98108 0.95691 0.78965 1.19945 0.95539 1.06888 1.04998 1.22352 0.97213 0.96233 0.91611 1.46356 1.09812 1.34345 1.28163 0.71828 1.77504 1.00395 1.11658 1.20707 1.22279 0.94558 0.95248 0.92573 1.20933 0.91168 0.94472 0.98688 0.89163 1.22929 0.99473 0.97509 0.97110 1.21173 0.87824 0.90738 0.95192 1.44437 1.10584 1.20635 1.57162 1.19021 0.86968 1.10156 1.19151 0.90568 1.24770 0.98098 0.98587 0.98872 1.69959 1.33833 1.20078 1.32858 0.86160 0.83583 0.77505 0.78906 1.21672 1.21824 1.20669 1.21490 0.86034 0.92081 0.97923 1.22975 1.01995 0.98200 0.94992 1.23077 1.01840 0.91808 1.02995 0.92555 0.91585 0.93287 0.92244 0.91954 0.90876 0.91078 0.76313 0.90632 0.91180 0.80888 0.92242 0.91920 0.94937 0.92457 0.93842 0.95692 0.94650 0.87870 0.88031 0.87910 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.12 -1.48 5.85 -26.73 -0.16 -1.63 16 3 C -0.08 -0.80 5.08 -26.73 -0.14 -0.94 16 4 C -0.16 -1.64 1.91 -155.65 -0.30 -1.94 16 5 C 0.55 7.12 6.46 -10.99 -0.07 7.05 16 6 O -0.54 -8.86 16.52 5.55 0.09 -8.77 16 7 N -0.72 -8.18 5.53 -61.48 -0.34 -8.52 16 8 C 0.20 2.38 5.64 -5.20 -0.03 2.35 16 9 C -0.26 -3.13 5.47 -105.05 -0.57 -3.71 16 10 C 0.08 0.70 11.90 -17.22 -0.20 0.50 16 11 N -0.48 -5.05 7.36 30.45 0.22 -4.83 16 12 H 0.44 3.08 8.96 -182.61 -1.64 1.45 16 13 N -0.28 -4.32 12.38 33.67 0.42 -3.90 16 14 C 0.12 1.85 5.89 -82.40 -0.49 1.36 16 15 C -0.03 -0.55 3.45 -89.62 -0.31 -0.86 16 16 H 0.09 1.58 7.36 -51.93 -0.38 1.20 16 17 C -0.13 -2.56 6.41 -24.90 -0.16 -2.72 16 18 C 0.18 4.33 5.41 -3.06 -0.02 4.31 16 19 N -0.60 -15.38 3.39 -170.07 -0.58 -15.96 16 20 C -0.22 -6.23 10.27 -15.07 -0.15 -6.39 16 21 H 0.08 2.04 7.84 -52.48 -0.41 1.63 16 22 C -0.01 -0.20 5.46 -17.43 -0.10 -0.29 16 23 N -0.92 -27.19 10.43 55.49 0.58 -26.61 16 24 Si 0.91 22.16 29.56 -169.99 -5.02 17.13 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 28 C 0.15 3.18 6.69 -2.53 -0.02 3.16 16 29 C -0.14 -1.36 9.77 -26.69 -0.26 -1.62 16 30 C -0.16 -1.31 9.93 -26.69 -0.26 -1.58 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.90 7.59 -51.93 -0.39 0.51 16 36 H 0.07 0.79 8.02 -51.93 -0.42 0.37 16 37 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 38 H 0.40 4.20 8.34 -40.82 -0.34 3.86 16 39 H 0.08 1.02 7.81 -51.93 -0.41 0.61 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.17 0.93 8.06 -52.48 -0.42 0.51 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 1.24 7.98 -51.93 -0.41 0.82 16 44 H 0.03 0.87 7.84 -51.93 -0.41 0.46 16 45 H 0.06 1.59 7.06 -51.93 -0.37 1.22 16 46 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.03 0.56 7.81 -51.93 -0.41 0.15 16 48 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.10 1.08 7.86 -51.93 -0.41 0.67 16 50 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 52 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 422.32 15.07 6.36 6.36 Total: -1.00 -33.92 422.32 -11.33 -45.24 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -10.19 Total: 4.50 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -2.86 Total: -4.64 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: 0.30 Total: -59.82 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.09 Total: -8.77 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -33.92 -11.33 -45.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130421215.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.274 kcal (2) G-P(sol) polarization free energy of solvation -33.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.01 seconds