Wall clock time and date at job start Wed Apr 1 2020 04:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47077 * 2 1 4 4 C 1.53006 * 109.46769 * 176.06355 * 3 2 1 5 5 C 1.50694 * 115.55061 * 294.74928 * 4 3 2 6 6 O 1.21283 * 119.99680 * 122.76204 * 5 4 3 7 7 N 1.34778 * 120.00331 * 302.75625 * 5 4 3 8 8 C 1.46498 * 120.00133 * 174.79780 * 7 5 4 9 9 C 1.50694 * 109.47058 * 180.02562 * 8 7 5 10 10 C 1.35319 * 126.04333 * 260.02227 * 9 8 7 11 11 N 1.34942 * 107.74808 * 180.02562 * 10 9 8 12 12 H 0.96998 * 126.03995 * 180.02562 * 11 10 9 13 13 N 1.40091 * 107.92701 * 0.02562 * 11 10 9 14 14 C 1.30837 * 108.20112 * 359.71514 * 13 11 10 15 15 C 1.50704 * 125.89872 * 180.25565 * 14 13 11 16 16 H 1.08997 * 110.88861 * 176.33082 * 15 14 13 17 17 C 1.55153 * 111.00591 * 300.21835 * 15 14 13 18 18 C 1.54323 * 102.94531 * 153.57088 * 17 15 14 19 19 N 1.47022 * 107.27074 * 337.80917 * 18 17 15 20 20 C 1.36932 * 125.64708 * 178.98594 * 19 18 17 21 21 H 1.08010 * 119.99590 * 185.55833 * 20 19 18 22 22 C 1.38803 * 120.00181 * 5.55502 * 20 19 18 23 23 N 1.31618 * 120.00363 * 5.95806 * 22 20 19 24 24 Si 1.86807 * 120.00139 * 185.95576 * 22 20 19 25 25 H 1.48497 * 109.47068 * 94.99575 * 24 22 20 26 26 H 1.48500 * 109.47406 * 214.99725 * 24 22 20 27 27 H 1.48503 * 109.46936 * 334.99883 * 24 22 20 28 28 C 1.47426 * 108.70189 * 358.93708 * 19 18 17 29 29 C 1.53006 * 117.49716 * 80.42419 * 4 3 2 30 30 C 1.53005 * 117.49461 * 149.08060 * 4 3 2 31 31 H 1.09000 * 109.47528 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47106 * 299.99809 * 1 2 3 33 33 H 1.08998 * 109.47114 * 59.99720 * 1 2 3 34 34 H 1.09003 * 109.46710 * 240.00000 * 2 1 3 35 35 H 1.08998 * 109.47114 * 120.00280 * 2 1 3 36 36 H 1.08999 * 109.47228 * 56.06769 * 3 2 1 37 37 H 1.09002 * 109.47709 * 296.06314 * 3 2 1 38 38 H 0.97000 * 119.99564 * 354.80271 * 7 5 4 39 39 H 1.08997 * 109.47200 * 300.00780 * 8 7 5 40 40 H 1.09006 * 109.46956 * 60.00233 * 8 7 5 41 41 H 1.08004 * 126.12208 * 359.97438 * 10 9 8 42 42 H 1.08999 * 110.72005 * 271.94198 * 17 15 14 43 43 H 1.09007 * 110.71911 * 35.20410 * 17 15 14 44 44 H 1.09003 * 109.87531 * 97.22246 * 18 17 15 45 45 H 1.08996 * 109.88172 * 218.23427 * 18 17 15 46 46 H 0.96996 * 120.00386 * 179.97438 * 23 22 20 47 47 H 1.08997 * 110.36704 * 265.29299 * 28 19 18 48 48 H 1.09000 * 110.36685 * 142.96616 * 28 19 18 49 49 H 1.08997 * 117.49682 * 215.00056 * 29 4 3 50 50 H 1.08998 * 117.49674 * 0.02562 * 29 4 3 51 51 H 1.09000 * 117.50087 * 359.97438 * 30 4 3 52 52 H 1.09000 * 117.49825 * 144.97561 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5668 1.4435 0.0990 5 6 4.1350 0.9032 1.3859 6 8 4.9132 -0.0268 1.3619 7 7 3.7786 1.4534 2.5635 8 6 4.2400 0.8577 3.8199 9 6 3.7055 1.6564 4.9806 10 6 4.3876 2.5860 5.6887 11 7 3.5599 3.0681 6.6392 12 1 3.7789 3.7483 7.2951 13 7 2.3284 2.4126 6.5114 14 6 2.4151 1.5710 5.5134 15 6 1.3156 0.6633 5.0249 16 1 1.6317 0.1118 4.1395 17 6 0.8530 -0.3035 6.1467 18 6 -0.6055 -0.6180 5.7523 19 7 -1.0694 0.4766 4.8873 20 6 -2.3068 0.5660 4.3077 21 1 -2.5221 1.3662 3.6150 22 6 -3.2844 -0.3718 4.6103 23 7 -3.0631 -1.2765 5.5403 24 14 -4.9142 -0.3499 3.6977 25 1 -4.8563 -1.3005 2.5584 26 1 -6.0047 -0.7513 4.6223 27 1 -5.1771 1.0195 3.1870 28 6 0.0178 1.4626 4.7483 29 6 4.3582 1.1877 -1.1852 30 6 4.3178 2.5921 -0.5776 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8932 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 1.6202 1.9762 0.8526 37 1 1.7354 1.9356 -0.9231 38 1 3.2165 2.2437 2.5791 39 1 3.8801 -0.1688 3.8890 40 1 5.3298 0.8631 3.8458 41 1 5.4115 2.8875 5.5233 42 1 1.4568 -1.2110 6.1470 43 1 0.8923 0.1873 7.1193 44 1 -0.6472 -1.5624 5.2097 45 1 -1.2268 -0.6762 6.6460 46 1 -3.7463 -1.9316 5.7521 47 1 -0.0989 2.2617 5.4804 48 1 0.0321 1.8715 3.7381 49 1 5.2898 0.6285 -1.0993 50 1 3.7911 1.0190 -2.1007 51 1 3.7241 3.3467 -1.0937 52 1 5.2226 2.9571 -0.0918 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130421215.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:22 Heat of formation + Delta-G solvation = 50.164183 kcal Electronic energy + Delta-G solvation = -31725.164205 eV Core-core repulsion = 27726.211369 eV Total energy + Delta-G solvation = -3998.952836 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.35416 -41.06414 -39.03715 -38.00810 -36.00731 -34.87031 -34.64318 -32.78940 -31.71990 -30.90969 -29.16551 -28.47506 -26.95709 -26.59223 -23.86211 -23.46494 -23.43787 -22.32192 -21.96436 -21.36302 -20.36995 -20.08305 -18.84436 -18.77538 -17.71615 -17.02774 -16.82356 -16.47899 -16.25931 -15.89470 -15.74847 -15.46835 -15.38975 -15.03161 -14.77965 -14.28454 -14.11641 -13.96682 -13.87091 -13.75816 -13.68558 -13.52549 -13.17673 -13.06581 -12.83753 -12.71422 -12.61567 -12.37981 -12.31500 -12.17642 -12.00528 -11.93364 -11.71145 -11.69940 -11.62754 -11.26480 -11.23630 -10.91194 -10.74222 -10.70123 -10.27297 -9.99640 -9.55056 -8.86859 -7.81110 -5.18440 0.96060 1.46182 1.48495 1.50660 1.57200 1.63604 2.02734 2.49918 2.51962 2.82548 3.36183 3.53284 3.65037 3.73256 3.85316 3.85604 3.91063 4.03318 4.05023 4.15236 4.18091 4.23876 4.31724 4.38359 4.52852 4.55494 4.61726 4.71065 4.77919 4.78640 4.85081 4.86378 4.91917 4.98622 5.00457 5.02752 5.04197 5.05410 5.14513 5.27583 5.29635 5.35671 5.36987 5.46180 5.47539 5.51589 5.57306 5.66239 5.76281 6.21625 6.51070 6.63025 6.76912 7.11567 7.30258 7.79112 8.45174 9.28697 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008211 B = 0.004157 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3409.130225 B = 6734.554336 C = 9357.248342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.069 4.069 4 C -0.172 4.172 5 C 0.549 3.451 6 O -0.584 6.584 7 N -0.709 5.709 8 C 0.207 3.793 9 C -0.272 4.272 10 C 0.109 3.891 11 N -0.464 5.464 12 H 0.455 0.545 13 N -0.322 5.322 14 C 0.106 3.894 15 C -0.010 4.010 16 H 0.089 0.911 17 C -0.118 4.118 18 C 0.185 3.815 19 N -0.621 5.621 20 C -0.236 4.236 21 H 0.083 0.917 22 C -0.065 4.065 23 N -0.952 5.952 24 Si 0.974 3.026 25 H -0.287 1.287 26 H -0.296 1.296 27 H -0.265 1.265 28 C 0.153 3.847 29 C -0.149 4.149 30 C -0.134 4.134 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.033 0.967 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.409 0.591 39 H 0.051 0.949 40 H 0.085 0.915 41 H 0.225 0.775 42 H 0.077 0.923 43 H 0.061 0.939 44 H 0.001 0.999 45 H 0.019 0.981 46 H 0.246 0.754 47 H 0.016 0.984 48 H 0.045 0.955 49 H 0.088 0.912 50 H 0.117 0.883 51 H 0.126 0.874 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.133 12.073 -8.534 24.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.106 4.106 4 C -0.175 4.175 5 C 0.337 3.663 6 O -0.465 6.465 7 N -0.359 5.359 8 C 0.083 3.917 9 C -0.284 4.284 10 C -0.042 4.042 11 N -0.172 5.172 12 H 0.302 0.698 13 N -0.145 5.145 14 C -0.061 4.061 15 C -0.031 4.031 16 H 0.107 0.893 17 C -0.157 4.157 18 C 0.060 3.940 19 N -0.347 5.347 20 C -0.365 4.365 21 H 0.101 0.899 22 C -0.257 4.257 23 N -0.601 5.601 24 Si 0.802 3.198 25 H -0.214 1.214 26 H -0.223 1.223 27 H -0.190 1.190 28 C 0.028 3.972 29 C -0.186 4.186 30 C -0.171 4.171 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.244 0.756 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.241 0.759 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.019 0.981 45 H 0.037 0.963 46 H 0.055 0.945 47 H 0.034 0.966 48 H 0.063 0.937 49 H 0.106 0.894 50 H 0.135 0.865 51 H 0.144 0.856 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 19.729 11.809 -7.578 24.209 hybrid contribution -0.986 -0.380 -0.056 1.058 sum 18.742 11.429 -7.634 23.242 Atomic orbital electron populations 1.21721 0.95736 1.01332 1.01904 1.21402 0.95485 0.97301 1.01122 1.21093 0.89236 0.96563 1.03745 1.21486 0.95848 1.08108 0.92062 1.19914 0.79666 0.81697 0.85069 1.90660 1.37139 1.30699 1.87993 1.46064 1.52960 1.31987 1.04917 1.19282 0.98803 0.94496 0.79093 1.19895 0.94525 1.08295 1.05718 1.22995 0.98388 0.93690 0.89085 1.46330 1.08492 1.33883 1.28481 0.69799 1.77405 1.03203 1.12657 1.21260 1.21819 0.94951 0.95642 0.93714 1.20572 0.90809 0.93948 0.97813 0.89282 1.22736 0.96257 0.98974 0.97696 1.20891 0.90465 0.89633 0.93025 1.44731 1.11201 1.21756 1.57048 1.19430 0.88015 1.10118 1.18964 0.89888 1.25619 1.01662 0.98545 0.99915 1.70190 1.34629 1.20804 1.34455 0.85120 0.79113 0.78109 0.77420 1.21411 1.22304 1.18953 1.21553 0.86316 0.91342 0.98031 1.23034 1.01325 0.99284 0.94953 1.23193 1.01455 0.91318 1.01171 0.93927 0.93997 0.91081 0.91371 0.94858 0.91374 0.88713 0.75584 0.93043 0.89676 0.75905 0.90397 0.91982 0.98082 0.96316 0.94519 0.96584 0.93690 0.89380 0.86487 0.85573 0.88171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.91 71.98 0.71 -3.31 16 2 C -0.12 -2.85 5.85 30.59 0.18 -2.67 16 3 C -0.07 -1.33 5.08 30.59 0.16 -1.17 16 4 C -0.17 -3.30 1.91 -52.92 -0.10 -3.40 16 5 C 0.55 13.72 6.46 87.65 0.57 14.28 16 6 O -0.58 -19.12 16.52 -3.04 -0.05 -19.17 16 7 N -0.71 -15.28 5.53 -466.80 -2.58 -17.86 16 8 C 0.21 4.57 5.64 85.63 0.48 5.05 16 9 C -0.27 -5.87 5.47 -20.14 -0.11 -5.98 16 10 C 0.11 1.56 11.90 83.54 0.99 2.55 16 11 N -0.46 -8.17 7.36 -57.59 -0.42 -8.60 16 12 H 0.45 4.71 8.96 -213.33 -1.91 2.80 16 13 N -0.32 -9.40 12.38 -47.38 -0.59 -9.98 16 14 C 0.11 3.10 5.89 43.10 0.25 3.35 16 15 C -0.01 -0.37 3.45 -10.15 -0.03 -0.40 16 16 H 0.09 3.20 7.36 -2.39 -0.02 3.18 16 17 C -0.12 -4.74 6.41 31.78 0.20 -4.54 16 18 C 0.19 9.66 5.41 86.73 0.47 10.13 16 19 N -0.62 -33.00 3.39 -691.99 -2.35 -35.35 16 20 C -0.24 -13.48 10.27 84.03 0.86 -12.62 16 21 H 0.08 4.50 7.84 -2.91 -0.02 4.47 16 22 C -0.06 -3.75 5.46 84.86 0.46 -3.29 16 23 N -0.95 -58.88 10.43 21.65 0.23 -58.65 16 24 Si 0.97 46.51 29.56 68.60 2.03 48.54 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 26 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 27 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 28 C 0.15 6.55 6.69 86.86 0.58 7.13 16 29 C -0.15 -2.50 9.77 30.62 0.30 -2.20 16 30 C -0.13 -1.77 9.93 30.62 0.30 -1.46 16 31 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.03 1.00 7.59 -2.39 -0.02 0.98 16 36 H 0.07 1.38 8.02 -2.39 -0.02 1.36 16 37 H 0.09 1.40 8.09 -2.39 -0.02 1.38 16 38 H 0.41 7.80 8.34 -92.71 -0.77 7.03 16 39 H 0.05 1.39 7.81 -2.39 -0.02 1.37 16 40 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 41 H 0.22 0.95 8.06 -2.91 -0.02 0.93 16 42 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 43 H 0.06 2.51 7.98 -2.38 -0.02 2.49 16 44 H 0.00 0.05 7.84 -2.39 -0.02 0.04 16 45 H 0.02 1.11 7.06 -2.39 -0.02 1.09 16 46 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 47 H 0.02 0.73 7.81 -2.39 -0.02 0.71 16 48 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 49 H 0.09 1.77 7.86 -2.39 -0.02 1.75 16 50 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 51 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 52 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -78.62 422.32 0.78 -77.84 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: -1.76 Total: 21.77 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 6.28 Total: 1.46 kcal Atomic # 7 Polarization: -124.73 SS G_CDS: -5.71 Total: -130.44 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.05 Total: -19.17 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -78.62 0.78 -77.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130421215.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.004 kcal (2) G-P(sol) polarization free energy of solvation -78.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds