Wall clock time and date at job start Wed Apr 1 2020 06:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35040 * 126.39911 * 2 1 4 4 N 1.30500 * 108.70267 * 180.02562 * 3 2 1 5 5 C 1.34131 * 109.25181 * 359.97438 * 4 3 2 6 6 C 1.50701 * 125.98258 * 180.02562 * 5 4 3 7 7 H 1.08999 * 110.66089 * 331.83152 * 6 5 4 8 8 C 1.54604 * 110.83084 * 208.59040 * 6 5 4 9 9 N 1.48112 * 103.42453 * 204.44879 * 8 6 5 10 10 C 1.34769 * 127.03577 * 219.28560 * 9 8 6 11 11 O 1.21618 * 120.00180 * 359.70521 * 10 9 8 12 12 C 1.47106 * 120.00422 * 179.70547 * 10 9 8 13 13 C 1.32988 * 120.00046 * 174.42694 * 12 10 9 14 14 C 1.50697 * 120.00170 * 358.93721 * 13 12 10 15 15 C 1.52998 * 109.47021 * 65.84580 * 14 13 12 16 16 C 1.53008 * 109.47153 * 185.84756 * 14 13 12 17 17 C 1.53001 * 109.47302 * 305.84414 * 14 13 12 18 18 C 1.47490 * 105.93206 * 39.02157 * 9 8 6 19 19 C 1.54005 * 107.08513 * 334.77878 * 18 9 8 20 20 H 1.09004 * 110.32256 * 120.29759 * 19 18 9 21 21 N 1.46494 * 110.33187 * 242.41531 * 19 18 9 22 22 C 1.36942 * 119.99656 * 273.54961 * 21 19 18 23 23 H 1.07993 * 120.00448 * 359.97438 * 22 21 19 24 24 C 1.38816 * 119.99340 * 179.97438 * 22 21 19 25 25 N 1.31618 * 119.99296 * 179.97438 * 24 22 21 26 26 Si 1.86796 * 120.00402 * 0.02562 * 24 22 21 27 27 H 1.48497 * 109.47279 * 90.00187 * 26 24 22 28 28 H 1.48504 * 109.47066 * 209.99883 * 26 24 22 29 29 H 1.48503 * 109.46930 * 329.99709 * 26 24 22 30 30 C 1.34665 * 108.02497 * 0.26817 * 5 4 3 31 31 H 1.09007 * 109.47229 * 89.97744 * 1 2 3 32 32 H 1.09001 * 109.47000 * 209.97644 * 1 2 3 33 33 H 1.08994 * 109.47356 * 329.97652 * 1 2 3 34 34 H 1.07999 * 125.64667 * 0.05472 * 3 2 1 35 35 H 1.09000 * 110.61744 * 85.93152 * 8 6 5 36 36 H 1.09000 * 110.54319 * 322.92623 * 8 6 5 37 37 H 1.08000 * 119.99629 * 354.42762 * 12 10 9 38 38 H 1.07999 * 120.00024 * 178.94155 * 13 12 10 39 39 H 1.09008 * 109.47116 * 89.71178 * 15 14 13 40 40 H 1.09005 * 109.46912 * 209.70366 * 15 14 13 41 41 H 1.08997 * 109.47437 * 329.70466 * 15 14 13 42 42 H 1.08998 * 109.47253 * 59.99672 * 16 14 13 43 43 H 1.09000 * 109.46921 * 180.02562 * 16 14 13 44 44 H 1.08995 * 109.46807 * 299.99996 * 16 14 13 45 45 H 1.09002 * 109.46880 * 23.09912 * 17 14 13 46 46 H 1.08999 * 109.46955 * 143.10215 * 17 14 13 47 47 H 1.08997 * 109.47189 * 263.10490 * 17 14 13 48 48 H 1.08997 * 109.91445 * 94.14160 * 18 9 8 49 49 H 1.09000 * 109.91502 * 215.22775 * 18 9 8 50 50 H 0.97001 * 120.00034 * 93.54061 * 21 19 18 51 51 H 0.97009 * 119.99790 * 180.02562 * 25 24 22 52 52 H 1.07997 * 126.59198 * 179.70121 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0869 0.0000 4 7 3.5096 0.6903 -0.0006 5 6 3.5460 -0.6506 -0.0004 6 6 4.7890 -1.5026 -0.0003 7 1 5.6145 -0.9785 -0.4819 8 6 4.5252 -2.8601 -0.6916 9 7 5.5478 -3.7524 -0.0985 10 6 6.2597 -4.7051 -0.7324 11 8 6.0861 -4.9054 -1.9194 12 6 7.2470 -5.5027 0.0112 13 6 7.8693 -6.5153 -0.5856 14 6 7.5455 -6.8607 -2.0162 15 6 7.9862 -5.7151 -2.9297 16 6 8.2841 -8.1411 -2.4115 17 6 6.0377 -7.0766 -2.1602 18 6 5.6322 -3.3808 1.3263 19 6 5.1691 -1.9165 1.4402 20 1 4.3028 -1.8434 2.0978 21 7 6.2592 -1.0754 1.9404 22 6 6.4561 -0.9402 3.2888 23 1 5.8076 -1.4533 3.9834 24 6 7.4894 -0.1436 3.7628 25 7 7.6784 -0.0132 5.0588 26 14 8.6107 0.7445 2.5614 27 1 8.0487 2.0852 2.2583 28 1 9.9594 0.8978 3.1638 29 1 8.7155 -0.0435 1.3071 30 6 2.2772 -1.1019 -0.0056 31 1 -0.3634 0.0004 -1.0277 32 1 -0.3633 -0.8902 0.5135 33 1 -0.3634 0.8897 0.5142 34 1 1.9334 2.1143 0.0008 35 1 4.6664 -2.7759 -1.7691 36 1 3.5219 -3.2181 -0.4608 37 1 7.4665 -5.2660 1.0418 38 1 8.6065 -7.0901 -0.0449 39 1 9.0165 -5.8783 -3.2459 40 1 7.3387 -5.6794 -3.8058 41 1 7.9173 -4.7716 -2.3883 42 1 7.9702 -8.9572 -1.7607 43 1 8.0502 -8.3906 -3.4464 44 1 9.3582 -7.9873 -2.3089 45 1 5.5176 -6.5538 -1.3575 46 1 5.7052 -6.6876 -3.1226 47 1 5.8162 -8.1423 -2.1029 48 1 4.9794 -4.0236 1.9169 49 1 6.6606 -3.4761 1.6745 50 1 6.8415 -0.6143 1.3165 51 1 8.4003 0.5438 5.3901 52 1 1.9613 -2.1346 -0.0115 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130541857.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:41:58 Heat of formation + Delta-G solvation = 103.425342 kcal Electronic energy + Delta-G solvation = -31504.550959 eV Core-core repulsion = 27507.907700 eV Total energy + Delta-G solvation = -3996.643259 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.97269 -40.41395 -38.40751 -36.19248 -34.10705 -34.00640 -32.22952 -31.28706 -30.78051 -28.45126 -27.71710 -27.11314 -27.07868 -26.79352 -24.62040 -23.17277 -22.19027 -21.09955 -20.69741 -19.69924 -19.55002 -17.89669 -17.50081 -17.00010 -16.86954 -15.74868 -15.60316 -15.37908 -14.99123 -14.58360 -14.23671 -14.16605 -13.99167 -13.76579 -13.73340 -13.51359 -13.18208 -13.08436 -12.92052 -12.73836 -12.66909 -12.20941 -12.12991 -11.99996 -11.97302 -11.71691 -11.32553 -10.83452 -10.80834 -10.79654 -10.73164 -10.70955 -10.60034 -10.47092 -10.06456 -9.69217 -9.58583 -9.40203 -9.28372 -9.23666 -8.95491 -8.26350 -8.15141 -7.24022 -5.76200 -3.11929 1.52011 2.14591 2.83575 3.25868 3.32740 3.43673 3.48272 3.50397 3.51711 4.54685 4.60889 4.63271 4.67210 4.76870 4.89414 4.90677 4.95760 5.08325 5.13862 5.14792 5.20497 5.27604 5.44312 5.51079 5.55962 5.58015 5.63499 5.66809 5.75120 5.76661 5.78671 5.92586 5.97015 5.97841 6.01789 6.13352 6.24469 6.25573 6.26361 6.32469 6.36375 6.42128 6.48283 6.57049 6.60091 6.73859 6.83646 6.90867 7.27800 7.86316 7.98869 8.29828 8.42603 8.44885 9.20660 9.93788 10.12760 11.41717 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007499 B = 0.004019 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3732.899682 B = 6965.964645 C = 9858.504132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.467 5.467 3 C 0.179 3.821 4 N -0.476 5.476 5 C 0.035 3.965 6 C -0.030 4.030 7 H 0.092 0.908 8 C 0.120 3.880 9 N -0.611 5.611 10 C 0.549 3.451 11 O -0.528 6.528 12 C -0.210 4.210 13 C -0.061 4.061 14 C -0.039 4.039 15 C -0.113 4.113 16 C -0.142 4.142 17 C -0.110 4.110 18 C 0.073 3.927 19 C 0.189 3.811 20 H 0.072 0.928 21 N -0.735 5.735 22 C -0.246 4.246 23 H 0.090 0.910 24 C 0.010 3.990 25 N -0.933 5.933 26 Si 0.882 3.118 27 H -0.282 1.282 28 H -0.292 1.292 29 H -0.277 1.277 30 C -0.062 4.062 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.202 0.798 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.030 0.970 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.024 0.976 48 H 0.060 0.940 49 H 0.086 0.914 50 H 0.364 0.636 51 H 0.259 0.741 52 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.547 -9.918 -13.895 20.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.151 5.151 3 C -0.103 4.103 4 N -0.193 5.193 5 C -0.095 4.095 6 C -0.051 4.051 7 H 0.110 0.890 8 C -0.004 4.004 9 N -0.345 5.345 10 C 0.342 3.658 11 O -0.409 6.409 12 C -0.230 4.230 13 C -0.081 4.081 14 C -0.039 4.039 15 C -0.170 4.170 16 C -0.199 4.199 17 C -0.167 4.167 18 C -0.053 4.053 19 C 0.077 3.923 20 H 0.090 0.910 21 N -0.376 5.376 22 C -0.375 4.375 23 H 0.108 0.892 24 C -0.186 4.186 25 N -0.580 5.580 26 Si 0.712 3.288 27 H -0.209 1.209 28 H -0.219 1.219 29 H -0.203 1.203 30 C -0.194 4.194 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.218 0.782 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.147 0.853 38 H 0.141 0.859 39 H 0.049 0.951 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.043 0.957 48 H 0.078 0.922 49 H 0.105 0.895 50 H 0.198 0.802 51 H 0.069 0.931 52 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -11.074 -9.555 -14.271 20.435 hybrid contribution 0.096 0.353 -0.337 0.497 sum -10.978 -9.202 -14.608 20.460 Atomic orbital electron populations 1.21981 0.77014 1.04555 1.03183 1.45360 1.07347 1.07092 1.55310 1.24969 0.85473 0.93503 1.06404 1.70199 1.19081 1.11586 1.18458 1.20164 0.92863 0.90383 1.06086 1.20740 0.93995 0.92498 0.97899 0.88966 1.22261 0.91310 0.88054 0.98749 1.48693 1.39127 1.35029 1.11605 1.18089 0.81164 0.79844 0.86725 1.90906 1.67435 1.67270 1.15258 1.22639 1.00337 0.98825 1.01243 1.23826 0.94705 0.94026 0.95541 1.19669 0.96715 0.95448 0.92041 1.21939 0.98059 0.98245 0.98723 1.22016 0.99781 0.96794 1.01299 1.22089 0.93598 0.97598 1.03420 1.23405 1.03218 0.98721 0.79962 1.21038 0.91842 0.87839 0.91631 0.90988 1.42783 1.34159 1.55835 1.04834 1.19032 1.12209 1.24817 0.81469 0.89187 1.24620 0.98806 0.99744 0.95412 1.69705 1.33802 1.43319 1.11172 0.86583 0.80703 0.80570 0.80906 1.20858 1.21891 1.20266 1.22353 0.90832 0.92383 1.13835 0.90848 0.89825 0.89596 0.78154 0.89968 0.91279 0.85265 0.85949 0.95077 0.92563 0.91404 0.92873 0.92588 0.92844 0.91816 0.92195 0.95710 0.92195 0.89525 0.80198 0.93074 0.81117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 11.18 59.85 0.67 1.12 16 2 N -0.47 -5.20 3.15 -125.99 -0.40 -5.60 16 3 C 0.18 2.37 12.56 -90.38 -1.14 1.23 16 4 N -0.48 -8.38 11.25 -10.87 -0.12 -8.50 16 5 C 0.03 0.56 6.04 -82.85 -0.50 0.06 16 6 C -0.03 -0.50 3.28 -90.08 -0.30 -0.79 16 7 H 0.09 1.71 7.74 -51.93 -0.40 1.30 16 8 C 0.12 1.69 6.36 -2.31 -0.01 1.67 16 9 N -0.61 -9.28 3.29 -171.36 -0.56 -9.85 16 10 C 0.55 8.37 5.90 -12.67 -0.07 8.29 16 11 O -0.53 -8.41 8.54 5.26 0.04 -8.37 16 12 C -0.21 -2.85 8.98 -37.81 -0.34 -3.19 16 13 C -0.06 -0.73 8.55 -36.13 -0.31 -1.04 16 14 C -0.04 -0.46 0.75 -155.66 -0.12 -0.58 16 15 C -0.11 -1.49 7.56 37.16 0.28 -1.21 16 16 C -0.14 -1.37 8.03 37.16 0.30 -1.08 16 17 C -0.11 -1.40 7.54 37.16 0.28 -1.12 16 18 C 0.07 1.19 6.45 -2.98 -0.02 1.17 16 19 C 0.19 3.51 3.21 -66.56 -0.21 3.30 16 20 H 0.07 1.40 7.81 -51.93 -0.41 1.00 16 21 N -0.73 -17.13 4.88 -52.10 -0.25 -17.39 16 22 C -0.25 -6.76 10.45 -15.06 -0.16 -6.91 16 23 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 24 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 25 N -0.93 -29.04 13.97 55.49 0.78 -28.27 16 26 Si 0.88 22.57 27.74 -169.99 -4.71 17.85 16 27 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 29 H -0.28 -6.75 6.52 56.52 0.37 -6.38 16 30 C -0.06 -0.79 10.68 -16.56 -0.18 -0.97 16 31 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 32 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.20 1.89 8.06 -52.49 -0.42 1.46 16 35 H 0.08 1.18 7.85 -51.93 -0.41 0.77 16 36 H 0.07 0.83 6.39 -51.93 -0.33 0.50 16 37 H 0.13 1.70 6.89 -52.49 -0.36 1.34 16 38 H 0.12 1.19 7.99 -52.49 -0.42 0.77 16 39 H 0.03 0.37 7.82 -51.92 -0.41 -0.04 16 40 H 0.06 0.76 7.22 -51.93 -0.37 0.38 16 41 H 0.07 1.04 5.44 -51.93 -0.28 0.76 16 42 H 0.05 0.47 8.12 -51.93 -0.42 0.05 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.05 0.48 8.11 -51.93 -0.42 0.06 16 45 H 0.06 0.90 4.82 -51.93 -0.25 0.65 16 46 H 0.06 0.81 6.79 -51.93 -0.35 0.46 16 47 H 0.02 0.28 7.73 -51.93 -0.40 -0.12 16 48 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.09 1.56 6.88 -51.93 -0.36 1.20 16 50 H 0.36 8.73 5.40 -40.82 -0.22 8.51 16 51 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 52 H 0.17 1.71 6.91 -52.49 -0.36 1.34 16 LS Contribution 401.63 15.07 6.05 6.05 Total: -1.00 -34.48 401.63 -9.41 -43.89 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -8.31 Total: 10.00 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -1.92 Total: 0.16 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: -0.56 Total: -69.59 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.04 Total: -8.37 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.71 Total: 17.85 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.48 -9.41 -43.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130541857.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.318 kcal (2) G-P(sol) polarization free energy of solvation -34.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds