Wall clock time and date at job start Wed Apr 1 2020 06:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35040 * 126.39911 * 2 1 4 4 N 1.30500 * 108.70267 * 180.02562 * 3 2 1 5 5 C 1.34131 * 109.25181 * 359.97438 * 4 3 2 6 6 C 1.50701 * 125.98258 * 180.02562 * 5 4 3 7 7 H 1.08999 * 110.66089 * 331.83152 * 6 5 4 8 8 C 1.54604 * 110.83084 * 208.59040 * 6 5 4 9 9 N 1.48112 * 103.42453 * 204.44879 * 8 6 5 10 10 C 1.34769 * 127.03577 * 219.28560 * 9 8 6 11 11 O 1.21618 * 120.00180 * 359.70521 * 10 9 8 12 12 C 1.47106 * 120.00422 * 179.70547 * 10 9 8 13 13 C 1.32988 * 120.00046 * 174.42694 * 12 10 9 14 14 C 1.50697 * 120.00170 * 358.93721 * 13 12 10 15 15 C 1.52998 * 109.47021 * 65.84580 * 14 13 12 16 16 C 1.53008 * 109.47153 * 185.84756 * 14 13 12 17 17 C 1.53001 * 109.47302 * 305.84414 * 14 13 12 18 18 C 1.47490 * 105.93206 * 39.02157 * 9 8 6 19 19 C 1.54005 * 107.08513 * 334.77878 * 18 9 8 20 20 H 1.09004 * 110.32256 * 120.29759 * 19 18 9 21 21 N 1.46494 * 110.33187 * 242.41531 * 19 18 9 22 22 C 1.36942 * 119.99656 * 273.54961 * 21 19 18 23 23 H 1.07993 * 120.00448 * 359.97438 * 22 21 19 24 24 C 1.38816 * 119.99340 * 179.97438 * 22 21 19 25 25 N 1.31618 * 119.99296 * 179.97438 * 24 22 21 26 26 Si 1.86796 * 120.00402 * 0.02562 * 24 22 21 27 27 H 1.48497 * 109.47279 * 90.00187 * 26 24 22 28 28 H 1.48504 * 109.47066 * 209.99883 * 26 24 22 29 29 H 1.48503 * 109.46930 * 329.99709 * 26 24 22 30 30 C 1.34665 * 108.02497 * 0.26817 * 5 4 3 31 31 H 1.09007 * 109.47229 * 89.97744 * 1 2 3 32 32 H 1.09001 * 109.47000 * 209.97644 * 1 2 3 33 33 H 1.08994 * 109.47356 * 329.97652 * 1 2 3 34 34 H 1.07999 * 125.64667 * 0.05472 * 3 2 1 35 35 H 1.09000 * 110.61744 * 85.93152 * 8 6 5 36 36 H 1.09000 * 110.54319 * 322.92623 * 8 6 5 37 37 H 1.08000 * 119.99629 * 354.42762 * 12 10 9 38 38 H 1.07999 * 120.00024 * 178.94155 * 13 12 10 39 39 H 1.09008 * 109.47116 * 89.71178 * 15 14 13 40 40 H 1.09005 * 109.46912 * 209.70366 * 15 14 13 41 41 H 1.08997 * 109.47437 * 329.70466 * 15 14 13 42 42 H 1.08998 * 109.47253 * 59.99672 * 16 14 13 43 43 H 1.09000 * 109.46921 * 180.02562 * 16 14 13 44 44 H 1.08995 * 109.46807 * 299.99996 * 16 14 13 45 45 H 1.09002 * 109.46880 * 23.09912 * 17 14 13 46 46 H 1.08999 * 109.46955 * 143.10215 * 17 14 13 47 47 H 1.08997 * 109.47189 * 263.10490 * 17 14 13 48 48 H 1.08997 * 109.91445 * 94.14160 * 18 9 8 49 49 H 1.09000 * 109.91502 * 215.22775 * 18 9 8 50 50 H 0.97001 * 120.00034 * 93.54061 * 21 19 18 51 51 H 0.97009 * 119.99790 * 180.02562 * 25 24 22 52 52 H 1.07997 * 126.59198 * 179.70121 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0869 0.0000 4 7 3.5096 0.6903 -0.0006 5 6 3.5460 -0.6506 -0.0004 6 6 4.7890 -1.5026 -0.0003 7 1 5.6145 -0.9785 -0.4819 8 6 4.5252 -2.8601 -0.6916 9 7 5.5478 -3.7524 -0.0985 10 6 6.2597 -4.7051 -0.7324 11 8 6.0861 -4.9054 -1.9194 12 6 7.2470 -5.5027 0.0112 13 6 7.8693 -6.5153 -0.5856 14 6 7.5455 -6.8607 -2.0162 15 6 7.9862 -5.7151 -2.9297 16 6 8.2841 -8.1411 -2.4115 17 6 6.0377 -7.0766 -2.1602 18 6 5.6322 -3.3808 1.3263 19 6 5.1691 -1.9165 1.4402 20 1 4.3028 -1.8434 2.0978 21 7 6.2592 -1.0754 1.9404 22 6 6.4561 -0.9402 3.2888 23 1 5.8076 -1.4533 3.9834 24 6 7.4894 -0.1436 3.7628 25 7 7.6784 -0.0132 5.0588 26 14 8.6107 0.7445 2.5614 27 1 8.0487 2.0852 2.2583 28 1 9.9594 0.8978 3.1638 29 1 8.7155 -0.0435 1.3071 30 6 2.2772 -1.1019 -0.0056 31 1 -0.3634 0.0004 -1.0277 32 1 -0.3633 -0.8902 0.5135 33 1 -0.3634 0.8897 0.5142 34 1 1.9334 2.1143 0.0008 35 1 4.6664 -2.7759 -1.7691 36 1 3.5219 -3.2181 -0.4608 37 1 7.4665 -5.2660 1.0418 38 1 8.6065 -7.0901 -0.0449 39 1 9.0165 -5.8783 -3.2459 40 1 7.3387 -5.6794 -3.8058 41 1 7.9173 -4.7716 -2.3883 42 1 7.9702 -8.9572 -1.7607 43 1 8.0502 -8.3906 -3.4464 44 1 9.3582 -7.9873 -2.3089 45 1 5.5176 -6.5538 -1.3575 46 1 5.7052 -6.6876 -3.1226 47 1 5.8162 -8.1423 -2.1029 48 1 4.9794 -4.0236 1.9169 49 1 6.6606 -3.4761 1.6745 50 1 6.8415 -0.6143 1.3165 51 1 8.4003 0.5438 5.3901 52 1 1.9613 -2.1346 -0.0115 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130541857.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:41:56 Heat of formation + Delta-G solvation = 82.959997 kcal Electronic energy + Delta-G solvation = -31505.438403 eV Core-core repulsion = 27507.907700 eV Total energy + Delta-G solvation = -3997.530703 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -42.97975 -41.55626 -39.67196 -37.33004 -35.81785 -35.02386 -33.58988 -32.91880 -32.01454 -29.69654 -28.99320 -28.11147 -28.01395 -27.61374 -25.99336 -24.83320 -23.26548 -22.26129 -21.98032 -20.87233 -20.80593 -19.50544 -18.89286 -18.04874 -18.00536 -16.94742 -16.73143 -16.42924 -16.40186 -15.98931 -15.51494 -15.29824 -15.11554 -15.00100 -14.74821 -14.71206 -14.56077 -14.29621 -14.03305 -13.81978 -13.68814 -13.49034 -13.36268 -13.17661 -13.01958 -12.91586 -12.65702 -12.55514 -12.36778 -12.23028 -11.89228 -11.81323 -11.78876 -11.75066 -11.68138 -11.42555 -11.09244 -10.78217 -10.38932 -10.35662 -10.29518 -9.57582 -9.36623 -9.04830 -8.01255 -5.32879 0.48275 1.18075 1.36644 1.40678 1.44817 2.04064 2.09038 2.20610 2.36959 2.48503 3.29200 3.37730 3.60799 3.77311 3.79939 3.81878 3.94914 4.04288 4.11330 4.14906 4.25286 4.30313 4.35350 4.45079 4.50498 4.51827 4.58878 4.62974 4.73762 4.77518 4.79273 4.82325 4.87774 4.90694 4.96658 4.97887 5.09716 5.17446 5.25002 5.27277 5.28545 5.37231 5.37737 5.44845 5.55101 5.56044 5.77237 5.78233 5.84498 6.23077 6.39982 6.65303 7.07684 7.26304 7.28103 7.84233 8.02142 9.20013 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007499 B = 0.004019 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3732.899682 B = 6965.964645 C = 9858.504132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.460 5.460 3 C 0.175 3.825 4 N -0.538 5.538 5 C -0.007 4.007 6 C -0.018 4.018 7 H 0.063 0.937 8 C 0.130 3.870 9 N -0.614 5.614 10 C 0.544 3.456 11 O -0.538 6.538 12 C -0.233 4.233 13 C -0.044 4.044 14 C -0.043 4.043 15 C -0.108 4.108 16 C -0.137 4.137 17 C -0.105 4.105 18 C 0.088 3.912 19 C 0.184 3.816 20 H 0.064 0.936 21 N -0.740 5.740 22 C -0.220 4.220 23 H 0.067 0.933 24 C -0.052 4.052 25 N -0.979 5.979 26 Si 0.942 3.058 27 H -0.287 1.287 28 H -0.294 1.294 29 H -0.261 1.261 30 C -0.045 4.045 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.232 0.768 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.130 0.870 38 H 0.150 0.850 39 H 0.043 0.957 40 H 0.047 0.953 41 H 0.042 0.958 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.047 0.953 46 H 0.046 0.954 47 H 0.039 0.961 48 H 0.080 0.920 49 H 0.069 0.931 50 H 0.361 0.639 51 H 0.256 0.744 52 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.962 -11.670 -15.563 23.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.143 5.143 3 C -0.107 4.107 4 N -0.257 5.257 5 C -0.136 4.136 6 C -0.039 4.039 7 H 0.082 0.918 8 C 0.007 3.993 9 N -0.348 5.348 10 C 0.338 3.662 11 O -0.419 6.419 12 C -0.253 4.253 13 C -0.063 4.063 14 C -0.043 4.043 15 C -0.165 4.165 16 C -0.194 4.194 17 C -0.162 4.162 18 C -0.038 4.038 19 C 0.074 3.926 20 H 0.082 0.918 21 N -0.382 5.382 22 C -0.351 4.351 23 H 0.085 0.915 24 C -0.244 4.244 25 N -0.630 5.630 26 Si 0.771 3.229 27 H -0.214 1.214 28 H -0.220 1.220 29 H -0.186 1.186 30 C -0.179 4.179 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.248 0.752 35 H 0.098 0.902 36 H 0.115 0.885 37 H 0.148 0.852 38 H 0.168 0.832 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.058 0.942 48 H 0.098 0.902 49 H 0.088 0.912 50 H 0.194 0.806 51 H 0.065 0.935 52 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -12.551 -11.343 -15.997 23.283 hybrid contribution 0.371 0.859 0.109 0.942 sum -12.180 -10.484 -15.888 22.598 Atomic orbital electron populations 1.22366 0.73674 1.06275 1.04971 1.45642 1.09244 1.05942 1.53423 1.25493 0.84816 0.95182 1.05242 1.70086 1.21958 1.12783 1.20837 1.20188 0.93803 0.90309 1.09258 1.20505 0.93838 0.93654 0.95890 0.91843 1.22258 0.92311 0.86532 0.98201 1.48707 1.39680 1.35404 1.10987 1.18408 0.81197 0.79853 0.86754 1.90908 1.67709 1.67634 1.15628 1.22643 1.01257 0.99926 1.01496 1.24151 0.93821 0.92933 0.95439 1.19736 0.96565 0.96205 0.91811 1.21862 0.98727 0.97579 0.98359 1.21975 1.00017 0.95618 1.01811 1.21996 0.93979 0.98207 1.02008 1.23003 1.02468 0.97195 0.81092 1.21213 0.90047 0.88458 0.92868 0.91810 1.42809 1.35426 1.56825 1.03132 1.19019 1.10506 1.22581 0.82957 0.91528 1.25253 1.00888 1.01540 0.96749 1.69845 1.34992 1.45161 1.13028 0.85606 0.78646 0.79165 0.79492 1.21427 1.22049 1.18645 1.22700 0.89930 0.93939 1.11363 0.88966 0.88331 0.87793 0.75223 0.90228 0.88546 0.85198 0.83199 0.93790 0.93362 0.93943 0.91641 0.92191 0.91880 0.93422 0.93480 0.94177 0.90234 0.91250 0.80597 0.93451 0.78233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 11.18 127.77 1.43 2.00 16 2 N -0.46 -9.13 3.15 -552.53 -1.74 -10.87 16 3 C 0.18 4.43 12.56 180.26 2.26 6.69 16 4 N -0.54 -19.06 11.25 -188.32 -2.12 -21.17 16 5 C -0.01 -0.21 6.04 41.39 0.25 0.04 16 6 C -0.02 -0.59 3.28 -10.44 -0.03 -0.62 16 7 H 0.06 2.45 7.74 -2.39 -0.02 2.43 16 8 C 0.13 3.55 6.36 86.62 0.55 4.10 16 9 N -0.61 -18.33 3.29 -814.33 -2.68 -21.01 16 10 C 0.54 16.30 5.90 86.57 0.51 16.82 16 11 O -0.54 -16.91 8.54 -4.09 -0.03 -16.95 16 12 C -0.23 -6.10 8.98 23.43 0.21 -5.89 16 13 C -0.04 -0.96 8.55 24.52 0.21 -0.75 16 14 C -0.04 -0.95 0.75 -52.93 -0.04 -0.99 16 15 C -0.11 -2.74 7.56 71.98 0.54 -2.20 16 16 C -0.14 -2.23 8.03 71.98 0.58 -1.65 16 17 C -0.10 -2.51 7.54 71.98 0.54 -1.97 16 18 C 0.09 2.86 6.45 86.53 0.56 3.42 16 19 C 0.18 6.93 3.21 45.88 0.15 7.08 16 20 H 0.06 2.51 7.81 -2.38 -0.02 2.49 16 21 N -0.74 -35.24 4.88 -318.74 -1.56 -36.80 16 22 C -0.22 -12.41 10.45 84.03 0.88 -11.53 16 23 H 0.07 4.02 8.06 -2.91 -0.02 4.00 16 24 C -0.05 -3.12 5.50 84.86 0.47 -2.66 16 25 N -0.98 -62.83 13.97 21.65 0.30 -62.53 16 26 Si 0.94 47.86 27.74 68.60 1.90 49.76 16 27 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 28 H -0.29 -14.89 7.11 99.48 0.71 -14.18 16 29 H -0.26 -12.42 6.52 99.48 0.65 -11.78 16 30 C -0.05 -1.07 10.68 83.08 0.89 -0.18 16 31 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.23 3.93 8.06 -2.91 -0.02 3.90 16 35 H 0.08 2.24 7.85 -2.39 -0.02 2.22 16 36 H 0.10 2.10 6.39 -2.39 -0.02 2.08 16 37 H 0.13 3.35 6.89 -2.91 -0.02 3.33 16 38 H 0.15 2.42 7.99 -2.91 -0.02 2.40 16 39 H 0.04 0.97 7.82 -2.38 -0.02 0.95 16 40 H 0.05 1.27 7.22 -2.38 -0.02 1.26 16 41 H 0.04 1.29 5.44 -2.39 -0.01 1.28 16 42 H 0.06 0.92 8.12 -2.39 -0.02 0.90 16 43 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.06 0.92 8.11 -2.39 -0.02 0.90 16 45 H 0.05 1.29 4.82 -2.39 -0.01 1.28 16 46 H 0.05 1.23 6.79 -2.39 -0.02 1.21 16 47 H 0.04 0.82 7.73 -2.39 -0.02 0.80 16 48 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 49 H 0.07 2.51 6.88 -2.39 -0.02 2.50 16 50 H 0.36 17.60 5.40 -92.71 -0.50 17.10 16 51 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 52 H 0.20 3.31 6.91 -2.91 -0.02 3.29 16 Total: -1.00 -78.14 401.63 4.39 -73.75 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: 0.36 Total: 34.11 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 9.95 Total: 11.72 kcal Atomic # 7 Polarization: -144.59 SS G_CDS: -7.80 Total: -152.39 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.03 Total: -16.95 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 1.90 Total: 49.76 kcal Total: -78.14 4.39 -73.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130541857.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.710 kcal (2) G-P(sol) polarization free energy of solvation -78.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds