Wall clock time and date at job start Wed Apr 1 2020 06:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52990 * 109.46950 * 2 1 4 4 C 1.53008 * 109.46950 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46922 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.46492 * 179.97438 * 5 4 3 7 7 C 1.35365 * 126.38912 * 275.01323 * 6 5 4 8 8 C 1.41500 * 105.50387 * 179.97438 * 7 6 5 9 9 C 1.47706 * 126.52096 * 180.02562 * 8 7 6 10 10 O 1.21579 * 119.99630 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00293 * 179.97438 * 9 8 7 12 12 C 1.47384 * 135.85343 * 359.63537 * 11 9 8 13 13 C 1.52067 * 87.41387 * 154.38350 * 12 11 9 14 14 C 1.47393 * 135.85043 * 179.97438 * 11 9 8 15 15 C 1.53512 * 117.21582 * 267.28293 * 13 12 11 16 16 C 1.54632 * 102.70114 * 262.92750 * 15 13 12 17 17 N 1.47148 * 107.37576 * 339.38318 * 16 15 13 18 18 C 1.36944 * 125.57862 * 179.04514 * 17 16 15 19 19 H 1.07997 * 119.99675 * 180.02562 * 18 17 16 20 20 C 1.38811 * 120.00203 * 0.02562 * 18 17 16 21 21 N 1.31615 * 119.99811 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99908 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47289 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.46865 * 120.00009 * 22 20 18 25 25 H 1.48498 * 109.46900 * 239.99302 * 22 20 18 26 26 C 1.47758 * 108.84154 * 359.08594 * 17 16 15 27 27 N 1.31807 * 106.96349 * 0.02562 * 8 7 6 28 28 N 1.28474 * 110.07444 * 359.97438 * 27 8 7 29 29 H 0.97001 * 124.88242 * 180.02562 * 28 27 8 30 30 H 1.08995 * 109.47120 * 300.00233 * 1 2 3 31 31 H 1.08998 * 109.47133 * 60.00279 * 1 2 3 32 32 H 1.09006 * 109.47002 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47016 * 239.99308 * 2 1 3 34 34 H 1.08996 * 109.46626 * 120.00290 * 2 1 3 35 35 H 1.08995 * 109.47399 * 59.99938 * 3 2 1 36 36 H 1.09009 * 109.47385 * 299.99610 * 3 2 1 37 37 H 1.08995 * 109.47120 * 59.99767 * 4 3 2 38 38 H 1.08998 * 109.47133 * 299.99721 * 4 3 2 39 39 H 1.09004 * 109.46880 * 60.00266 * 5 4 3 40 40 H 1.08992 * 109.47539 * 299.99623 * 5 4 3 41 41 H 1.08000 * 127.24685 * 359.97438 * 7 6 5 42 42 H 1.08995 * 113.54188 * 268.99594 * 12 11 9 43 43 H 1.09006 * 113.54357 * 39.67221 * 12 11 9 44 44 H 1.08995 * 113.54815 * 320.32271 * 14 11 9 45 45 H 1.08993 * 113.54223 * 90.93477 * 14 11 9 46 46 H 1.09006 * 110.76247 * 21.22495 * 15 13 12 47 47 H 1.08996 * 110.77210 * 144.62238 * 15 13 12 48 48 H 1.09004 * 109.86734 * 98.83305 * 16 15 13 49 49 H 1.09000 * 109.86677 * 219.93577 * 16 15 13 50 50 H 0.97000 * 120.00362 * 180.02562 * 21 20 18 51 51 H 1.08997 * 110.40663 * 263.50967 * 26 17 16 52 52 H 1.09001 * 110.40363 * 141.07594 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0800 2.8849 -0.0013 6 6 5.5871 2.8848 -0.0013 7 6 6.3902 2.7900 1.0843 8 6 7.7122 2.8332 0.5817 9 6 8.9566 2.7632 1.3743 10 8 8.9015 2.6579 2.5842 11 7 10.1532 2.8159 0.7562 12 6 10.6196 2.9303 -0.6372 13 6 11.8959 3.5471 -0.0867 14 6 11.5646 2.7784 1.1793 15 6 11.9463 5.0777 0.0209 16 6 12.6893 5.4851 -1.2726 17 7 13.4306 4.3047 -1.7440 18 6 14.2024 4.2473 -2.8737 19 1 14.7087 3.3301 -3.1358 20 6 14.3341 5.3681 -3.6820 21 7 13.7167 6.4858 -3.3629 22 14 15.3863 5.2896 -5.2235 23 1 15.9677 3.9297 -5.3572 24 1 14.5470 5.5888 -6.4114 25 1 16.4811 6.2882 -5.1268 26 6 13.2052 3.1911 -0.7994 27 7 7.6221 2.9478 -0.7283 28 7 6.3880 2.9791 -1.0843 29 1 6.0766 3.0588 -1.9995 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8899 36 1 1.6767 1.9563 -0.8901 37 1 3.9330 0.9287 -0.8908 38 1 3.9338 0.9285 0.8891 39 1 3.7171 3.3990 0.8888 40 1 3.7164 3.3985 -0.8912 41 1 6.0859 2.7003 2.1166 42 1 10.7761 1.9679 -1.1242 43 1 10.0264 3.6181 -1.2399 44 1 11.7604 3.3394 2.0930 45 1 11.9855 1.7733 1.2024 46 1 10.9403 5.4972 0.0371 47 1 12.5086 5.3849 0.9026 48 1 11.9703 5.7978 -2.0300 49 1 13.3836 6.2982 -1.0605 50 1 13.8083 7.2689 -3.9279 51 1 14.0236 3.1295 -0.0822 52 1 13.1001 2.2501 -1.3394 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148436420.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:33:51 Heat of formation + Delta-G solvation = 83.050231 kcal Electronic energy + Delta-G solvation = -29837.890024 eV Core-core repulsion = 25840.363234 eV Total energy + Delta-G solvation = -3997.526790 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -42.79705 -40.44813 -38.04731 -36.83999 -35.59222 -33.69222 -32.27683 -31.88309 -30.34016 -29.42254 -28.63039 -26.66944 -25.95956 -25.81727 -24.07073 -22.97019 -22.62778 -21.46092 -21.16791 -20.24605 -18.98126 -18.20410 -17.81474 -16.73731 -16.49408 -16.21341 -15.94027 -15.72704 -15.12120 -14.74019 -14.60004 -14.40824 -14.26840 -13.82663 -13.75455 -13.73875 -13.39477 -13.23785 -12.82814 -12.47831 -12.38398 -12.24246 -12.16457 -11.89146 -11.75432 -11.49131 -11.40940 -11.25484 -11.01709 -10.96957 -10.90310 -10.84601 -10.57677 -10.41320 -10.18638 -10.06172 -9.83634 -9.64935 -9.58579 -9.49194 -9.10143 -8.58335 -8.44167 -6.81043 -5.69477 -3.02794 1.56997 1.96498 2.66315 3.04342 3.40394 3.46030 3.48435 3.51940 4.11834 4.33620 4.40475 4.45683 4.49347 4.61112 4.70765 4.72099 4.93523 4.94593 5.05336 5.14507 5.15341 5.28247 5.33527 5.38361 5.42978 5.44591 5.51237 5.52017 5.62591 5.64142 5.71987 5.72707 5.75341 5.81453 5.86864 5.88748 5.92201 5.94620 6.09941 6.26644 6.29856 6.32215 6.51773 6.59288 6.72817 6.76160 6.84659 7.58498 7.65929 7.73617 7.85100 7.89629 8.26912 8.33152 9.23558 9.83730 10.49836 11.42169 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015756 B = 0.001946 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.700262 B =14386.725133 C =15505.414050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.117 4.117 5 C -0.049 4.049 6 C 0.013 3.987 7 C -0.177 4.177 8 C -0.003 4.003 9 C 0.627 3.373 10 O -0.544 6.544 11 N -0.630 5.630 12 C 0.131 3.869 13 C -0.108 4.108 14 C 0.121 3.879 15 C -0.116 4.116 16 C 0.180 3.820 17 N -0.605 5.605 18 C -0.225 4.225 19 H 0.079 0.921 20 C -0.009 4.009 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.291 1.291 26 C 0.154 3.846 27 N -0.246 5.246 28 N -0.381 5.381 29 H 0.444 0.556 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.160 0.840 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.060 0.940 47 H 0.063 0.937 48 H 0.046 0.954 49 H 0.043 0.957 50 H 0.251 0.749 51 H 0.027 0.973 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.597 -9.910 6.709 26.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.155 4.155 5 C -0.088 4.088 6 C -0.112 4.112 7 C -0.205 4.205 8 C -0.164 4.164 9 C 0.415 3.585 10 O -0.420 6.420 11 N -0.364 5.364 12 C 0.008 3.992 13 C -0.110 4.110 14 C -0.001 4.001 15 C -0.155 4.155 16 C 0.056 3.944 17 N -0.331 5.331 18 C -0.354 4.354 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.741 3.259 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.218 1.218 26 C 0.027 3.973 27 N -0.082 5.082 28 N -0.095 5.095 29 H 0.288 0.712 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.178 0.822 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.097 0.903 45 H 0.104 0.896 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.064 0.936 49 H 0.061 0.939 50 H 0.061 0.939 51 H 0.044 0.956 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -23.080 -9.747 6.374 25.851 hybrid contribution -0.125 0.009 -0.741 0.752 sum -23.204 -9.738 5.633 25.787 Atomic orbital electron populations 1.21782 0.95876 1.01635 1.01795 1.21536 0.95856 0.96843 1.02170 1.21631 0.94833 0.97031 1.02288 1.21634 0.95431 0.95466 1.02969 1.20186 0.86341 0.98234 1.04055 1.21391 0.94945 1.07531 0.87376 1.21462 0.90352 1.08951 0.99693 1.21847 0.94815 1.09856 0.89884 1.16340 0.80198 0.76323 0.85636 1.90774 1.86214 1.51951 1.13093 1.49602 1.04556 1.70830 1.11397 1.22842 0.92400 1.00531 0.83404 1.22220 0.96326 0.97301 0.95138 1.22804 0.78161 1.00367 0.98795 1.22456 1.00512 0.91699 1.00807 1.21211 0.93822 0.89423 0.89964 1.44549 1.56386 1.07179 1.24993 1.19100 1.21163 0.97125 0.97987 0.90351 1.24791 1.00575 0.95915 0.99229 1.69976 1.46554 1.01543 1.38861 0.86060 0.79607 0.77271 0.82922 1.20516 1.21872 1.21825 1.21133 0.91786 0.92431 0.91909 1.73729 1.01075 1.18213 1.15147 1.43390 1.03048 1.53172 1.09868 0.71194 0.92718 0.92790 0.92810 0.92072 0.91907 0.91662 0.91915 0.91910 0.91112 0.89040 0.90582 0.82212 0.89832 0.89477 0.90301 0.89641 0.92150 0.91833 0.93574 0.93853 0.93865 0.95551 0.93959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 37.16 0.37 -0.33 16 2 C -0.13 -0.63 5.93 -26.73 -0.16 -0.79 16 3 C -0.12 -0.55 5.21 -26.73 -0.14 -0.69 16 4 C -0.12 -0.64 5.20 -26.73 -0.14 -0.78 16 5 C -0.05 -0.28 5.77 -27.88 -0.16 -0.44 16 6 C 0.01 0.12 6.48 -82.21 -0.53 -0.41 16 7 C -0.18 -2.17 10.73 -39.36 -0.42 -2.59 16 8 C 0.00 -0.05 7.10 -82.77 -0.59 -0.63 16 9 C 0.63 10.88 8.07 -12.39 -0.10 10.77 16 10 O -0.54 -10.65 17.70 5.30 0.09 -10.55 16 11 N -0.63 -10.34 3.70 -186.92 -0.69 -11.03 16 12 C 0.13 2.13 7.13 -7.34 -0.05 2.08 16 13 C -0.11 -1.86 1.06 -155.23 -0.16 -2.02 16 14 C 0.12 1.84 8.02 -7.48 -0.06 1.78 16 15 C -0.12 -2.21 6.40 -25.61 -0.16 -2.37 16 16 C 0.18 4.33 5.39 -2.83 -0.02 4.32 16 17 N -0.60 -15.02 3.41 -170.53 -0.58 -15.60 16 18 C -0.23 -6.16 10.28 -15.06 -0.15 -6.31 16 19 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 20 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 21 N -0.92 -26.88 10.30 55.49 0.57 -26.31 16 22 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 C 0.15 3.03 6.70 -3.22 -0.02 3.01 16 27 N -0.25 -3.41 10.78 33.42 0.36 -3.05 16 28 N -0.38 -3.81 6.83 33.50 0.23 -3.58 16 29 H 0.44 2.92 8.96 -190.44 -1.71 1.21 16 30 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.27 8.14 -51.92 -0.42 -0.16 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.16 1.80 8.06 -52.49 -0.42 1.37 16 42 H 0.08 1.28 8.06 -51.93 -0.42 0.86 16 43 H 0.09 1.52 7.54 -51.93 -0.39 1.13 16 44 H 0.08 1.18 8.13 -51.93 -0.42 0.75 16 45 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 47 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 48 H 0.05 1.23 7.38 -51.93 -0.38 0.85 16 49 H 0.04 1.16 7.49 -51.93 -0.39 0.77 16 50 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 51 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 52 H 0.04 0.79 8.00 -51.93 -0.42 0.38 16 LS Contribution 420.31 15.07 6.33 6.33 Total: -1.00 -33.57 420.31 -11.74 -45.31 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -10.43 Total: -2.65 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -2.60 Total: 4.23 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: -0.11 Total: -59.57 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -33.57 -11.74 -45.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148436420.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.362 kcal (2) G-P(sol) polarization free energy of solvation -33.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds