Wall clock time and date at job start Wed Apr 1 2020 06:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52990 * 109.46950 * 2 1 4 4 C 1.53008 * 109.46950 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46922 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.46492 * 179.97438 * 5 4 3 7 7 C 1.35365 * 126.38912 * 275.01323 * 6 5 4 8 8 C 1.41500 * 105.50387 * 179.97438 * 7 6 5 9 9 C 1.47706 * 126.52096 * 180.02562 * 8 7 6 10 10 O 1.21579 * 119.99630 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00293 * 179.97438 * 9 8 7 12 12 C 1.47384 * 135.85343 * 359.63537 * 11 9 8 13 13 C 1.52067 * 87.41387 * 154.38350 * 12 11 9 14 14 C 1.47393 * 135.85043 * 179.97438 * 11 9 8 15 15 C 1.53512 * 117.21582 * 267.28293 * 13 12 11 16 16 C 1.54632 * 102.70114 * 262.92750 * 15 13 12 17 17 N 1.47148 * 107.37576 * 339.38318 * 16 15 13 18 18 C 1.36944 * 125.57862 * 179.04514 * 17 16 15 19 19 H 1.07997 * 119.99675 * 180.02562 * 18 17 16 20 20 C 1.38811 * 120.00203 * 0.02562 * 18 17 16 21 21 N 1.31615 * 119.99811 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99908 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47289 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.46865 * 120.00009 * 22 20 18 25 25 H 1.48498 * 109.46900 * 239.99302 * 22 20 18 26 26 C 1.47758 * 108.84154 * 359.08594 * 17 16 15 27 27 N 1.31807 * 106.96349 * 0.02562 * 8 7 6 28 28 N 1.28474 * 110.07444 * 359.97438 * 27 8 7 29 29 H 0.97001 * 124.88242 * 180.02562 * 28 27 8 30 30 H 1.08995 * 109.47120 * 300.00233 * 1 2 3 31 31 H 1.08998 * 109.47133 * 60.00279 * 1 2 3 32 32 H 1.09006 * 109.47002 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47016 * 239.99308 * 2 1 3 34 34 H 1.08996 * 109.46626 * 120.00290 * 2 1 3 35 35 H 1.08995 * 109.47399 * 59.99938 * 3 2 1 36 36 H 1.09009 * 109.47385 * 299.99610 * 3 2 1 37 37 H 1.08995 * 109.47120 * 59.99767 * 4 3 2 38 38 H 1.08998 * 109.47133 * 299.99721 * 4 3 2 39 39 H 1.09004 * 109.46880 * 60.00266 * 5 4 3 40 40 H 1.08992 * 109.47539 * 299.99623 * 5 4 3 41 41 H 1.08000 * 127.24685 * 359.97438 * 7 6 5 42 42 H 1.08995 * 113.54188 * 268.99594 * 12 11 9 43 43 H 1.09006 * 113.54357 * 39.67221 * 12 11 9 44 44 H 1.08995 * 113.54815 * 320.32271 * 14 11 9 45 45 H 1.08993 * 113.54223 * 90.93477 * 14 11 9 46 46 H 1.09006 * 110.76247 * 21.22495 * 15 13 12 47 47 H 1.08996 * 110.77210 * 144.62238 * 15 13 12 48 48 H 1.09004 * 109.86734 * 98.83305 * 16 15 13 49 49 H 1.09000 * 109.86677 * 219.93577 * 16 15 13 50 50 H 0.97000 * 120.00362 * 180.02562 * 21 20 18 51 51 H 1.08997 * 110.40663 * 263.50967 * 26 17 16 52 52 H 1.09001 * 110.40363 * 141.07594 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0800 2.8849 -0.0013 6 6 5.5871 2.8848 -0.0013 7 6 6.3902 2.7900 1.0843 8 6 7.7122 2.8332 0.5817 9 6 8.9566 2.7632 1.3743 10 8 8.9015 2.6579 2.5842 11 7 10.1532 2.8159 0.7562 12 6 10.6196 2.9303 -0.6372 13 6 11.8959 3.5471 -0.0867 14 6 11.5646 2.7784 1.1793 15 6 11.9463 5.0777 0.0209 16 6 12.6893 5.4851 -1.2726 17 7 13.4306 4.3047 -1.7440 18 6 14.2024 4.2473 -2.8737 19 1 14.7087 3.3301 -3.1358 20 6 14.3341 5.3681 -3.6820 21 7 13.7167 6.4858 -3.3629 22 14 15.3863 5.2896 -5.2235 23 1 15.9677 3.9297 -5.3572 24 1 14.5470 5.5888 -6.4114 25 1 16.4811 6.2882 -5.1268 26 6 13.2052 3.1911 -0.7994 27 7 7.6221 2.9478 -0.7283 28 7 6.3880 2.9791 -1.0843 29 1 6.0766 3.0588 -1.9995 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8899 36 1 1.6767 1.9563 -0.8901 37 1 3.9330 0.9287 -0.8908 38 1 3.9338 0.9285 0.8891 39 1 3.7171 3.3990 0.8888 40 1 3.7164 3.3985 -0.8912 41 1 6.0859 2.7003 2.1166 42 1 10.7761 1.9679 -1.1242 43 1 10.0264 3.6181 -1.2399 44 1 11.7604 3.3394 2.0930 45 1 11.9855 1.7733 1.2024 46 1 10.9403 5.4972 0.0371 47 1 12.5086 5.3849 0.9026 48 1 11.9703 5.7978 -2.0300 49 1 13.3836 6.2982 -1.0605 50 1 13.8083 7.2689 -3.9279 51 1 14.0236 3.1295 -0.0822 52 1 13.1001 2.2501 -1.3394 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148436420.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:33:47 Heat of formation + Delta-G solvation = 63.167748 kcal Electronic energy + Delta-G solvation = -29838.752193 eV Core-core repulsion = 25840.363234 eV Total energy + Delta-G solvation = -3998.388959 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 7.98 seconds Orbital eigenvalues (eV) -43.71863 -41.82810 -39.45789 -37.30610 -37.26773 -34.30637 -34.04334 -32.97751 -31.33765 -30.86689 -30.17341 -27.64924 -27.22339 -27.05464 -25.80502 -24.06266 -23.31692 -22.12636 -21.99301 -21.81384 -20.30385 -19.61088 -18.73081 -18.52790 -17.70483 -17.10091 -17.03335 -16.67808 -16.59379 -16.27331 -15.93924 -15.60642 -15.09044 -14.97812 -14.79604 -14.47822 -14.29085 -14.14828 -14.13348 -13.76517 -13.70812 -13.61789 -13.29801 -12.90515 -12.85979 -12.79318 -12.64901 -12.29485 -12.02625 -11.97414 -11.96662 -11.82024 -11.81650 -11.72977 -11.69952 -11.59780 -11.33365 -11.21985 -11.07478 -10.67350 -10.48882 -9.95202 -9.74128 -8.84291 -7.80320 -5.15110 0.48508 1.08966 1.48948 1.49486 1.59796 1.64861 2.05073 2.30874 2.52880 3.16511 3.31682 3.43539 3.58388 3.60699 3.81870 3.84655 4.00334 4.04440 4.07628 4.21881 4.25900 4.28195 4.45807 4.53241 4.55051 4.57644 4.58931 4.64424 4.71736 4.77111 4.81996 4.86013 4.90499 4.92291 4.95277 5.02747 5.04041 5.06805 5.17822 5.19331 5.21644 5.25869 5.34180 5.37931 5.48697 5.51565 5.55338 5.68691 5.80261 6.10330 6.23142 6.58614 6.76505 7.08353 7.14376 7.81843 8.46695 9.30533 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015756 B = 0.001946 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.700262 B =14386.725133 C =15505.414050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.129 4.129 3 C -0.116 4.116 4 C -0.112 4.112 5 C -0.045 4.045 6 C 0.039 3.961 7 C -0.197 4.197 8 C -0.033 4.033 9 C 0.623 3.377 10 O -0.574 6.574 11 N -0.632 5.632 12 C 0.138 3.862 13 C -0.101 4.101 14 C 0.128 3.872 15 C -0.102 4.102 16 C 0.192 3.808 17 N -0.625 5.625 18 C -0.233 4.233 19 H 0.088 0.912 20 C -0.069 4.069 21 N -0.954 5.954 22 Si 0.976 3.024 23 H -0.263 1.263 24 H -0.295 1.295 25 H -0.296 1.296 26 C 0.153 3.847 27 N -0.268 5.268 28 N -0.366 5.366 29 H 0.459 0.541 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.164 0.836 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.113 0.887 46 H 0.062 0.938 47 H 0.077 0.923 48 H 0.009 0.991 49 H 0.006 0.994 50 H 0.244 0.756 51 H 0.039 0.961 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.933 -11.397 6.552 28.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.166 4.166 3 C -0.153 4.153 4 C -0.150 4.150 5 C -0.084 4.084 6 C -0.087 4.087 7 C -0.225 4.225 8 C -0.192 4.192 9 C 0.412 3.588 10 O -0.453 6.453 11 N -0.365 5.365 12 C 0.016 3.984 13 C -0.103 4.103 14 C 0.006 3.994 15 C -0.140 4.140 16 C 0.067 3.933 17 N -0.351 5.351 18 C -0.362 4.362 19 H 0.105 0.895 20 C -0.262 4.262 21 N -0.603 5.603 22 Si 0.805 3.195 23 H -0.187 1.187 24 H -0.222 1.222 25 H -0.223 1.223 26 C 0.028 3.972 27 N -0.105 5.105 28 N -0.083 5.083 29 H 0.307 0.693 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.182 0.818 42 H 0.117 0.883 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.131 0.869 46 H 0.081 0.919 47 H 0.095 0.905 48 H 0.028 0.972 49 H 0.024 0.976 50 H 0.054 0.946 51 H 0.057 0.943 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.409 -11.274 6.214 27.595 hybrid contribution 0.226 0.445 -0.707 0.865 sum -24.183 -10.828 5.507 27.063 Atomic orbital electron populations 1.21783 0.95572 1.01720 1.02031 1.21550 0.96150 0.97138 1.01807 1.21590 0.93969 0.96821 1.02927 1.21573 0.96071 0.95019 1.02383 1.20348 0.83423 0.98810 1.05828 1.21826 0.96349 1.04490 0.86070 1.21654 0.89786 1.10208 1.00852 1.21736 0.94881 1.12073 0.90517 1.16675 0.80928 0.75677 0.85521 1.90740 1.86746 1.53532 1.14318 1.49613 1.04947 1.70566 1.11364 1.22785 0.91419 1.00822 0.83367 1.22039 0.95614 0.95947 0.96699 1.22862 0.77472 1.01456 0.97561 1.22249 0.99965 0.93316 0.98463 1.20882 0.92438 0.88729 0.91240 1.44829 1.56074 1.08878 1.25335 1.19525 1.20798 0.97273 0.98601 0.89454 1.25621 1.02327 0.95818 1.02411 1.70201 1.48249 1.02023 1.39873 0.85036 0.77669 0.77721 0.79090 1.18707 1.22245 1.22339 1.21300 0.93170 0.91330 0.91408 1.73644 1.02947 1.19152 1.14742 1.43487 1.02210 1.51605 1.10983 0.69341 0.92545 0.92474 0.92866 0.92333 0.92438 0.91222 0.91048 0.92137 0.92167 0.87865 0.88226 0.81825 0.88301 0.90913 0.89765 0.86925 0.91890 0.90472 0.97226 0.97567 0.94641 0.94299 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 71.98 0.71 -0.47 16 2 C -0.13 -1.08 5.93 30.59 0.18 -0.90 16 3 C -0.12 -0.80 5.21 30.59 0.16 -0.64 16 4 C -0.11 -0.98 5.20 30.60 0.16 -0.82 16 5 C -0.05 -0.39 5.77 29.85 0.17 -0.21 16 6 C 0.04 0.66 6.48 41.40 0.27 0.93 16 7 C -0.20 -4.68 10.73 22.41 0.24 -4.43 16 8 C -0.03 -0.97 7.10 42.46 0.30 -0.67 16 9 C 0.62 21.38 8.07 86.75 0.70 22.08 16 10 O -0.57 -22.44 17.70 -3.97 -0.07 -22.51 16 11 N -0.63 -20.02 3.70 -863.55 -3.19 -23.21 16 12 C 0.14 4.36 7.13 83.76 0.60 4.95 16 13 C -0.10 -3.34 1.06 -52.63 -0.06 -3.40 16 14 C 0.13 3.61 8.02 83.67 0.67 4.28 16 15 C -0.10 -3.84 6.40 31.32 0.20 -3.64 16 16 C 0.19 9.53 5.39 86.81 0.47 9.99 16 17 N -0.62 -31.15 3.41 -693.43 -2.36 -33.51 16 18 C -0.23 -12.73 10.28 84.03 0.86 -11.87 16 19 H 0.09 4.50 7.83 -2.91 -0.02 4.48 16 20 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 21 N -0.95 -57.54 10.30 21.65 0.22 -57.32 16 22 Si 0.98 45.48 29.55 68.60 2.03 47.51 16 23 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 24 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 25 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 26 C 0.15 5.78 6.70 86.23 0.58 6.35 16 27 N -0.27 -7.23 10.78 -48.18 -0.52 -7.75 16 28 N -0.37 -6.71 6.83 -47.93 -0.33 -7.04 16 29 H 0.46 5.05 8.96 -219.99 -1.97 3.08 16 30 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 33 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.07 0.39 8.14 -2.38 -0.02 0.38 16 37 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.10 0.73 8.14 -2.39 -0.02 0.72 16 40 H 0.10 0.45 8.14 -2.39 -0.02 0.44 16 41 H 0.16 3.62 8.06 -2.91 -0.02 3.59 16 42 H 0.10 2.83 8.06 -2.39 -0.02 2.81 16 43 H 0.07 2.53 7.54 -2.38 -0.02 2.51 16 44 H 0.08 2.32 8.13 -2.39 -0.02 2.30 16 45 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 46 H 0.06 2.34 8.07 -2.38 -0.02 2.32 16 47 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 48 H 0.01 0.53 7.38 -2.39 -0.02 0.52 16 49 H 0.01 0.34 7.49 -2.39 -0.02 0.32 16 50 H 0.24 14.38 8.31 -92.71 -0.77 13.61 16 51 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 52 H 0.06 1.99 8.00 -2.39 -0.02 1.97 16 Total: -1.00 -74.63 420.31 1.39 -73.24 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -1.07 Total: 12.51 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 6.68 Total: 18.09 kcal Atomic # 7 Polarization: -122.64 SS G_CDS: -6.18 Total: -128.82 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.07 Total: -22.51 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -74.63 1.39 -73.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148436420.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.405 kcal (2) G-P(sol) polarization free energy of solvation -74.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.98 seconds